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Dislocations are ubiquitous linear defects and are responsible for many of the properties of crystalline materials. Studies on the glide process of dislocations in bulk materials have mostly focused on the response of dislocations with macroscopic lengths to external loading or unloading. Using in situ transmission electron microscopy, we show that nanometer-sized loops with a Burgers vector of [fraction one-half]〈111〉 in α-Fe can undergo one-dimensional diffusion even in the absence of stresses that are effective in driving the loops. The loop size dependence of the loop diffusivity obtained is explained by the stochastic thermal fluctuation in the numbers of double kinks.

Chemoradiotherapy can induce immunogenic cell death, triggering danger signals such as high-mobility group box 1 protein, and resulting in T-cell immunity. This concept can potentially be harnessed for clinical therapy to enhance tumor-specific immunity. There is however limited information to translate this theory directly in a clinical setting. In this review, we will discuss and summarize molecular and cellular mechanisms underlying immunogenic tumor cell death induced by chemoradiotherapy, with emphasis on a clinical translation.

Sickle cell disease (SCD) is an inherited hemolytic anemia whose pathophysiology is driven by polymerization of the hemoglobin S (Hb S), leading to hemolysis and vaso-occlusive events. Inflammation is a fundamental component in these processes and a continuous inflammatory stimulus can lead to tissue damages. Thus, pro-resolving pathways emerge in order to restore the homeostasis. For example there is the annexin A1 (ANXA1), an endogenous anti-inflammatory protein involved in reducing neutrophil-endothelial interactions, accelerating neutrophil apoptosis and stimulating macrophage efferocytosis. We investigated the expression of ANXA1 in plasma of SCD patients and its relation with anemic, hemolytic and inflammatory parameters of the disease. Three SCD genotypes were considered: the homozygous inheritance for Hb S (Hb SS) and the association between Hb S and the hemoglobin variants D-Punjab (Hb SD) and C (Hb SC). ANXA1 and proinflammatory cytokines were quantified by ELISA in plasma of SCD patients and control individuals without hemoglobinopathies. Hematological and biochemical parameters were analyzed by flow cytometry and spectrophotometer. The plasma levels of ANXA1 were about three-fold lesser in SCD patients compared to the control group, and within the SCD genotypes the most elevated levels were found in Hb SS individuals (approximately three-fold higher). Proinflammatory cytokines were higher in SCD groups than in the control individuals. Anemic and hemolytic markers were higher in Hb SS and Hb SD genotypes compared to Hb SC patients. White blood cells and platelets count were higher in Hb SS genotype and were positively correlated to ANXA1 levels. We found that ANXA1 is down-regulated and differentially expressed within the SCD genotypes. Its expression seems to depend on the inflammatory, hemolytic and vaso-occlusive characteristics of the diseased. These data may lead to new biological targets for therapeutic intervention in SCD.

Microfossils of fish teeth and denticles, referred to as ichthyoliths, provide critical information for depositional ages, paleo‐environments, and marine ecosystems, especially in pelagic realms. However, owing to their small size and rarity, it is time‐consuming and difficult to analyze large numbers of ichthyoliths from sediment samples, limiting their use in scientific studies. Here, we propose a method to automatically detect ichthyoliths from microscopic images using a deep learning technique. We applied YOLO‐v7, one of the latest object detection architectures, and trained several models under different conditions. The model trained under appropriate conditions with an original data set achieved an F1 score of 0.87. We then enhanced the data set efficiently using the pre‐trained model. We validated the practical applicability of the model by comparing the number of ichthyoliths detected by the model with those counted manually. This revealed that the best model can predict the number of triangular teeth, denticles and irregularly shaped teeth with minimal human intervention. This object detection method can extend the applicability of deep learning to a wider array of microfossils and has the potential to dramatically increase the spatiotemporal resolution of ichthyolith records for applications across disciplines. Plain Language Summary Fossils of fish teeth and denticles, referred to as ichthyoliths, can be used to study the environmental changes of marine conditions throughout Earth's history. However, it is time‐consuming and difficult to analyze large numbers of ichthyoliths from sediment samples, limiting their use in scientific studies. Here, we trained several artificial intelligence models to automatically detect ichthyoliths from microscopic images. The best model is suitable for counting the number of fish teeth, denticles, and irregularly shaped teeth fragments with minimal human intervention. We propose that object detection, a deep learning technique used in this study, can be applicable for the study of various microfossils, as well as for increasing the spatiotemporal resolution of ichthyolith records. Key Points We trained object detection models under different conditions to detect microfossil fish teeth and denticles from microscopic images The best model can count teeth, denticles and irregularly shaped teeth from samples Object detection may improve the observation efficiency of a wide array of microfossils

[This corrects the article DOI: 10.1371/journal.pone.0165833.].

We previously reported that oesophageal squamous cell carcinoma (SCC) had a relatively high incidence of EGFR and HER-2 overexpression. Thus, anti-HER family targeting may become a promising approach to treat oesophageal SCC. In the present study, we investigated (a) the distribution of EGFR and HER-2 expression in oesophageal SCC ( n =66) detected by immunohistochemistry and (b) cetuximab- and/or trastuzumab-mediated biological activity (antiproliferative effect by the MTT assay, apoptosis-inducing activity by the annexin V/propidium iodide assay, and antibody-dependent cellular cytotoxicity (ADCC) by the 51 Cr-release assay) against oesophageal SCC cell lines with various levels of EGFR and HER-2. Twelve of the 66 patients (18%) showed both EGFR- and HER-2 expression. Out of both EGFR- and HER-2-positive cases, nine cases (75%) showed EGFR and HER-2 expression in individually distinct regions. Furthermore, the combination of cetuximab and trastuzumab could induce synergistic antiproliferative effects and additional ADCC activities against not all, but several oesophageal SCC cell lines with EGFR and HER-2 expression. The combination of cetuximab and trastuzumab may be useful in the treatment of oesophageal SCC with EGFR and HER-2 expression.

Second-harmonic generation (SHG) in layered TlInS2 crystals was studied over the temperature range of 77-300 K using a confocal laser microscope system. As expected, the SHG signal was observed in the low temperature ferroelectric phase of the layered compound. In addition, the polarization properties of the SHG signals of TlInS2 were investigated in the 80-180 K range. The results are in good agreement with those of the symmetric space group C32 in the ferroelectric phase.

Background: As HER2 is expressed in 30% of oesophageal squamous cell carcinomas (ESCCs), T-cell-based immunotherapy and monoclonal antibodies targeted against HER2 are attractive, novel approaches for ESCCs. However, it was shown that there is an inverse correlation between HER2 and MHC class I expression on tumours. Thus, the correlation between HER2 and MHC class I expressions on ESCC was evaluated. Methods: Expressions of MHC class I and HER2 in ESCC tissues ( n =80) and cell lines were assessed by immunohistochemistry, fluorescence in situ hybridisation (FISH), and flow cytometry. We investigated whether HER2 downregulation with small interfering RNA (siRNA) in ESCC cell lines could upregulate the expression of MHC class I and the antigen presentation machinery components, and could increase their sensitivity for tumour antigen-specific CTLs. Results: There was an inverse correlation between HER2 and MHC class I expressions in both tumour tissues and cell lines. Downregulation of HER2 with siRNA resulted in the upregulation of MHC class I expression, leading to increased CTL recognition by tumour antigen-specific CTLs. Conclusion: HER2-overexpressing ESCC tumour cells showed a reduced sensitivity for CTLs through the downregulation of MHC class I.

The utilisation of antitumour T cells induced by cancer vaccination with HER-2 peptides or antibodies (Herceptin) against HER-2, as immunotherapy for oesophageal cancer, is a novel and attractive approach. It is important to clarify the frequencies of HER-2 expression and gene amplification in patients with oesophageal squamous cell carcinoma (SCC) and to evaluate the relationship between HER-2 status and HLA haplotype, since the candidates for HER-2 peptide-based vaccination are restricted to a certain HLA haplotype. We determined the frequency of HER-2 expression using the HercepTest™ for immunohistochemistry and HER-2 gene amplification by fluorescence in situ hybridisation (FISH) assay in oesophageal SCC ( n =66). HER-2-positive tumours (1+/2+/3+) analysed by a HercepTest were observed in 30.3% of all the patients and HER-2 gene amplification evaluated by FISH was observed in 11.0% of all the patients, in which all HercepTest (3+) tumours were found to have gene amplification and three of six moderately positive (2+) tumours showed gene amplification. Furthermore, HER-2-positive cells were present more diffusely and were larger within each tumour in the patients who were HercepTest 3+ than those who were HercepTest 1+. Moreover, the survival rate in HER-2-positive group was significantly worse than that in HER-2-negative group. Also, the survival rate in the patients with HER-2 gene amplification was significantly worse than that without HER-2 gene amplification. In addition, oesophageal SCC patients with both HLA-A24-positive and HER-2-positive tumours (1+/2+/3+) accounted for 26% of these cases, and both HLA-A2- and HER-2-positive tumours accounted for 18% of them.