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The zooplankton community of Lake Champlain has been altered over the past decade due to the introduction of two predatory zooplankton species. Bythotrephes longimanus Leydig, 1860 was first detected in Lake Champlain in August 2014, and Cercopagis pengoi (Ostroumov, 1891) was detected in August 2018. Monitoring for both invasive species at 15 lake sites using whole water tow sampling has been ongoing since 2010 with no detection of either species until 2014. Utilizing data from the Lake Champlain long-term monitoring program, we assessed pre- and post-invasion population dynamics of both invasive species on the native zooplankton community. Our results showed shifts in community structure following invasion, including a reduction in Diacyclops thomasi (Forbes, 1882) populations by both invaders and a reduction in Daphnia retrocurva Forbes, 1882 following the introduction of B. longimanus. Other cyclopoids, bosminids, and rotifers were also reduced, corresponding to both introduced species. The native large-bodied plankton predator Leptodora kindtii (Focke, 1844) appears to be unable to coexist with either invasive predatory cladoceran, displaying seasonal partitioning between L. kindtii and the Cercopagidae. These findings suggest that the invasion of both large predators in Lake Champlain have impacted pelagic zooplankton community structure.

Isoperla powhatan Szczytko & Kondratieff, 2015 is newly proposed as a junior synonym of I. myersi Szczytko & Kondratieff, 2015 based on an integrative analysis of morphological and molecular phylogenetic data. Revised descriptions of the adult male, adult female, and mature egg of I. myersi are presented, together with the first description of the final instar larva. Comparative morphological observations of I. arcana Beaty, Holland & Lenat, 2017 and I. holochlora Klapálek, 1923 improve the taxonomic concepts of each species and provides support for a new species group containing the three taxa. The new synonymy adds 868 unique locations from nine USA states to the distribution of I. myersi, including 826 from North Carolina Department of Environmental Quality samples. This new synonymy has dramatically changed our understanding of the overall range and frequency of occurrence of I. myersi populations, which will impact any impending conservation status assessment of this species. This study includes color light microscopy images, scanning electron micrographs, a substantial amount of new occurrence data, and distribution maps for each species.

The function of the spike protein N terminal domain (NTD) in coronavirus (CoV) infections is poorly understood. However, some rare antibodies that target the SARS-CoV-2 NTD potently neutralize the virus. This finding suggests the NTD may contribute, in part, to protective immunity. Pansarbecovirus antibodies are desirable for broad protection, but the NTD region of SARS-CoV and SARS-CoV-2 exhibit a high level of sequence divergence; therefore, cross-reactive NTD-specific antibodies are unexpected, and there is no structure of a SARS-CoV NTD-specific antibody in complex with NTD. Here, we report a monoclonal antibody COV1-65, encoded by the IGHV1-69 gene, that recognizes the NTD of SARS-CoV S protein. A prophylaxis study showed the mAb COV1-65 prevented disease when administered before SARS-CoV challenge of BALB/c mice, an effect that requires intact fragment crystallizable region (Fc) effector functions for optimal protection in vivo. The footprint on the S protein of COV1-65 is near to functional components of the S2 fusion machinery, and the selection of COV1-65 escape mutant viruses identified critical residues Y886H and Q974H, which likely affect the epitope through allosteric effects. Structural features of the mAb COV1-65-SARS-CoV antigen interaction suggest critical antigenic determinants that should be considered in the rational design of sarbecovirus vaccine candidates.

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Rift Valley fever virus (RVFV) poses a continued threat to human health and animal husbandry. Two neutralizing and protective human monoclonal antibodies (mAbs), RVFV-268 and RVFV-379, exhibit similar affinities and epitope footprints on the Gn glycoprotein component of the RVFV Gn-Gc capsomeric lattice. Here, we define fine details of the biophysical determinants of Gn recognition used by RVFV human monoclonal antibodies through studying an antibody encoded by a set of recombined genes not previously identified in RVFV antibodies. We find that RVFV-379 exhibits a larger footprint than that observed for RVFV-268 and other antibodies targeting the same region, which involves major contributions of both the light and heavy chains. RVFV-379 also uses an oblique angle of approach towards the virion surface that contrasts with the perpendicular angle of engagement observed for some other potently neutralizing human mAbs. Further, consistent with amino acid sequence variation within and proximal to the RVFV-379 epitope, in vitro neutralization screening reveals a limited degree of neutralization breadth across prevalent RVFV strains, suggesting that RVFV has fewer functional constraints at this region of the virus envelope. By dissecting the molecular determinants of mAb recognition of Gn, this integrated analysis refines strategies needed for the rational design of vaccines that can elicit a potent and species-wide protective antibody immune response to this important re-emerging pathogen.

Bythotrephes longimanus (spiny waterflea) and Cercopagis pengoi (fishhook waterflea) are large invasive predatory cladocerans that alter the composition, density, and behavior of native zooplankton communities. Lake Champlain was invaded by Bythotrephes and Cercopagis in 2014 and 2018, respectively. This study was conducted to determine the changes in crustaceous zooplankton diel vertical migration (DVM) associated with the presence of these two invasive species. Daytime and nighttime zooplankton samples were collected from vertical net tows at 5 m intervals using 153 µm and 250 µm closing plankton nets at a 50 m deep site in Lake Champlain during the month of August (2013–2016, 2019, 2023, and 2024). Sampling dates encompassed years before and after each invader entered the lake. The results show increased DVM activity in several native zooplankton taxa associated with invasion years, including Daphnia retrocurva, Bosmina longirostris, and Diacyclops thomasi. Zooplankton in Lake Champlain appear to occupy deeper depths during the daytime after Bythotrephes and Cercopagis invaded than in previous years. Alterations associated with Bythotrephes were more extreme, whereas changes associated with Cercopagis were longer lasting. These shifts in DVM behavior have potential implications for trophic dynamics in Lake Champlain by altering competitive interactions and foraging behavior of zooplankton and their predators.

Lake Champlain, the sixth largest freshwater lake in the U.S., is a deep thermally stratified temperate zone lake system. Recently, flood events have impacted the Northeastern U.S. more frequently than in past decades, resulting in increased turbidity and other impacts in northern temperate lakes. This study represents an unprecedented analysis of the impacts of major spring and summer flooding in 2011 on Lake Champlain zooplankton communities. Few studies exist on flood impacts on lake systems, especially in natural un-impounded lakes. Our results illustrate the impacts of large-scale flooding on planktonic communities in deep stratified temperate lakes and the differential responses among species based on autecological traits. Community responses include flood-adapted increase during the flood event (Ceriodaphnia reticulata and Eubosmina coregoni), a flood-intolerant decline (Asplanchna spp. and Keratella cochlearis) or a delayed flood intolerance (Daphnia retrocurva, Mesocyclops edax, and Polyarthra spp.). Our results suggest that large, temperate lakes such as Lake Champlain will experience community shifts in zooplankton composition during future extreme flood events associated with climate change-related weather patterns in the Northeastern U.S.

There is a 187-year history of stonefly (Insecta, Plecoptera) research in New York State. In total, 29 current valid species have a type locality in this state. Despite several new species' descriptions and numerous other papers discussing stoneflies in general from New York, a comprehensive treatment of the state's fauna is lacking. In this treatment we provide a comprehensive approach to assessing distribution and diversity patterns across multiple dimensions, focusing on adult flight periods, habitat associations, elevation gradients, United States Geological Survey Hierarchical Unit Code (HUC8) drainages, and United States Environmental Protection Agency (USEPA) Level IV Ecoregions. This work is based on recent fieldwork, exhaustive searches of museums and research collections for specimens and accumulation of specimen data from peer-reviewed literature. Our analyses of 6,538 records from 1375 unique locations confirm the presence of 127 species in 42 genera across nine families, representing 58 of the 62 counties of the state. Nine new state records are presented with three known only from historical collections prior to 1970. Further analyses produced for all species include adult flight periods, elevational ranges, and distributional affinities across HUC8s and USEPA Level IV Ecoregions. This research will provide the basis for future conservation decisions in the state, identify gaps in our current knowledge, and elucidate needs for future research. A specimen data set has been associated with this document to aid in future assessments.

Despite recent success in hepatitis C virus (HCV) treatment using antivirals, an HCV vaccine is still needed to prevent reinfections in treated patients, to avert the emergence of drug-resistant strains, and to provide protection for people with no access to the antiviral therapeutics. The early production of broadly neutralizing antibodies (bNAbs) associates with HCV clearance. Several potent bNAbs bind a conserved HCV glycoprotein E2 epitope using an unusual heavy chain complementarity determining region 3 (HCDR3) containing an intra-loop disulfide bond. Isolation of additional structurally-homologous bNAbs would facilitate the recognition of key determinants of such bNAbs and guide rational vaccine design. Here we report the identification of new antibodies containing an HCDR3 disulfide bond motif using computational screening with the Rosetta software. Using the newly-discovered and already-known members of this antibody family, we review the required HCDR3 amino acid composition and propose determinants for the bent versus straight HCDR3 loop conformation observed in these antibodies. Identifying determinants of broadly neutralizing antibodies against hepatitis C virus (HCV) may guide HCV vaccine design. Here, the authors discover new anti-HCV antibodies using computational screening and analyze the amino acid composition and sequence-structure relationships in this antibody family.

Immunoglobulin light chain amyloidosis is the most common form of systemic amyloidosis. AL amyloidosis is caused by a misfolded light chain produced by a clonal population of plasma cells. Disease status currently is defined by measuring the absolute quantity of serum free light chain protein, but this measurement often fails to identify the subclinical presence of clonal cells that may merit additional therapy. Next generation sequencing has the sensitivity to measure the relative amount of dominating light chains within the repertoire of a patient, and this technique is in clinical use to identify clonal populations of plasma cells for multiple myeloma, a related disorder. In this proof-of-concept study, we used bone marrow aspirates of AL amyloidosis positive patients and used reverse transcription of the antibody transcriptome followed by next generation sequencing to identify antibody variable-diversity-joining gene sequences for patients with immunoglobulin light chain amyloidosis, and demonstrate that this technology can be used to identify the dominant clone. The data also reveal differing patterns of overall antibody repertoire disruption in different patients. This method merits further study in larger prospective studies to establish its utility in detecting residual disease for patients with immunoglobulin light chain amyloidosis.