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3 result(s) for "Navara, Lukáš"
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Reversible Lectin Binding to Glycan-Functionalized Graphene
The monolayer character of two-dimensional materials predestines them for application as active layers of sensors. However, their inherent high sensitivity is always accompanied by a low selectivity. Chemical functionalization of two-dimensional materials has emerged as a promising way to overcome the selectivity issues. Here, we demonstrate efficient graphene functionalization with carbohydrate ligands—chitooligomers, which bind proteins of the lectin family with high selectivity. Successful grafting of a chitooligomer library was thoroughly characterized, and glycan binding to wheat germ agglutinin was studied by a series of methods. The results demonstrate that the protein quaternary structure remains intact after binding to the functionalized graphene, and that the lectin can be liberated from the surface by the addition of a binding competitor. The chemoenzymatic assay with a horseradish peroxidase conjugate also confirmed the intact catalytic properties of the enzyme. The present approach thus paves the way towards graphene-based sensors for carbohydrate–lectin binding.
Automatic infant 2D pose estimation from videos: comparing seven deep neural network methods
Automatic markerless estimation of infant posture and motion from ordinary videos carries great potential for movement studies \"in the wild\", facilitating understanding of motor development and massively increasing the chances of early diagnosis of disorders. There is rapid development of human pose estimation methods in computer vision thanks to advances in deep learning and machine learning. However, these methods are trained on datasets featuring adults in different contexts. This work tests and compares seven popular methods (AlphaPose, DeepLabCut/DeeperCut, Detectron2, HRNet, MediaPipe/BlazePose, OpenPose, and ViTPose) on videos of infants in supine position. Surprisingly, all methods except DeepLabCut and MediaPipe have competitive performance without additional finetuning, with ViTPose performing best. Next to standard performance metrics (object keypoint similarity, average precision and recall), we introduce errors expressed in the neck-mid-hip ratio and additionally study missed and redundant detections and the reliability of the internal confidence ratings of the different methods, which are relevant for downstream tasks. Among the networks with competitive performance, only AlphaPose could run close to real time (27 fps) on our machine. We provide documented Docker containers or instructions for all the methods we used, our analysis scripts, and processed data at https://hub.docker.com/u/humanoidsctu and https://osf.io/x465b/.
New and interesting records of rare caddisflies (Trichoptera, Insecta) from Slovakia with comments on their ecology and conservation status
The distribution and diversity of insects are crucial conservation issues. The order Trichoptera is comprised of numerous endangered species, but the rarity of some makes it challenging to determine their conservation priority. In recent decades, data based on caddisfly larvae have become more frequent in limnological research in Slovakia. Our research, focusing mainly on adult caddisflies, has led to more reliable and accurate identification of many species that cannot be identified with certainty in the larval stage.We combined several entomological methods, including sweeping, Malaise traps, and UV light attraction, to increase the likelihood of catching rare species. The text lists and discusses the discoveries of caddisfly species that are particularly important for faunistics or biodiversity in Slovakia, as well as in the Central European context. Enoicyla reichenbachii (Kolenati, 1848), Limnephilus incisus Curtis, 1834, Ptilocolepus granulatus (Pictet, 1834) and Oecetis testacea (Curtis, 1834) were recorded for the first time in Slovakia. The rare species Hagenella clathrata (Kolenati, 1848) and Adicella balcanica Botosaneanu and Novák, 1965, previously found in Slovakia, were also recorded. Additionally, a new locality of Adicella syriaca Ulmer, 1907 indicates a further northward shift of this Mediterranean species. We further discussed the faunistically important records of Beraeamyia hrabei Mayer, 1937, Allotrichia pallicornis (Eaton, 1873), Ceraclea riparia (Albarda, 1874), Grammotaulius nitidus (Müller, 1764) and Limnephilus fuscicornis Rambur, 1842 from Slovakia. The conservation status of each species is proposed and discussed on the basis of our faunistic records, in accordance with the forthcoming update of the Slovak Red Book.