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result(s) for
"Neill, Evan"
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Ecological Footprint Accounting for Countries: Updates and Results of the National Footprint Accounts, 2012–2018
by
Murthy, Adeline
,
Galli, Alessandro
,
Wackernagel, Mathis
in
Accounting
,
Agricultural practices
,
Asia
2018
Ecological Footprint accounting quantifies the supply and demand of Earth’s biocapacity. The National Footprint Accounts (NFA) are the most widely used Ecological Footprint (EF) dataset, and provide results for most countries and the world from 1961 to 2014, based primarily on publicly available UN datasets. Here, we review the evolution of the NFA, describe and quantify the effects of improvements that have been implemented into the accounts since the 2012 edition, and review the latest global trends. Comparing results over six editions of NFAs, we find that time-series trends in world results remain stable, and that the world Ecological Footprint for the latest common year (2008) has increased six percent after four major accounting improvements and more than thirty minor improvements. The latest results from the NFA 2018 Edition for the year 2014 indicate that humanity’s Ecological Footprint is 1.7 Earths, and that global ecological overshoot continues to grow. While improved management practices and increased agricultural yields have assisted in a steady increase of Earth’s biocapacity since 1961, humanity’s Ecological Footprint continues to increase at a faster pace than global biocapacity, particularly in Asia, where the total and per capita Ecological Footprint are increasing faster than all other regions.
Journal Article
Metabolic Profiling of IDH Mutation and Malignant Progression in Infiltrating Glioma
2017
Infiltrating low grade gliomas (LGGs) are heterogeneous in their behavior and the strategies used for clinical management are highly variable. A key factor in clinical decision-making is that patients with mutations in the
isocitrate dehydrogenase 1
and
2 (IDH1/2
) oncogenes are more likely to have a favorable outcome and be sensitive to treatment. Because of their relatively long overall median survival, more aggressive treatments are typically reserved for patients that have undergone malignant progression (MP) to an anaplastic glioma or secondary glioblastoma (GBM). In the current study,
ex vivo
metabolic profiles of image-guided tissue samples obtained from patients with newly diagnosed and recurrent LGG were investigated using proton high-resolution magic angle spinning spectroscopy (
1
H HR-MAS). Distinct spectral profiles were observed for lesions with
IDH-
mutated genotypes, between astrocytoma and oligodendroglioma histologies, as well as for tumors that had undergone MP. Levels of 2-hydroxyglutarate (2HG) were correlated with increased mitotic activity, axonal disruption, vascular neoplasia, and with several brain metabolites including the choline species, glutamate, glutathione, and GABA. The information obtained in this study may be used to develop strategies for
in vivo
characterization of infiltrative glioma, in order to improve disease stratification and to assist in monitoring response to therapy.
Journal Article
Quantitative multi-modal MR imaging as a non-invasive prognostic tool for patients with recurrent low-grade glioma
by
Cha, Soonmee
,
Molinaro, Annette
,
Phillips, Joanna J.
in
Brain - diagnostic imaging
,
Brain - pathology
,
Brain Neoplasms - diagnostic imaging
2017
Low-grade gliomas can vary widely in disease course and therefore patient outcome. While current characterization relies on both histological and molecular analysis of tissue resected during surgery, there remains high variability within glioma subtypes in terms of response to treatment and outcome. In this study we hypothesized that parameters obtained from magnetic resonance data would be associated with progression-free survival for patients with recurrent low-grade glioma. The values considered were derived from the analysis of anatomic imaging, diffusion weighted imaging, and
1
H magnetic resonance spectroscopic imaging data. Metrics obtained from diffusion and spectroscopic imaging presented strong prognostic capability within the entire population as well as when restricted to astrocytomas, but demonstrated more limited efficacy in the oligodendrogliomas. The results indicate that multi-parametric imaging data may be applied as a non-invasive means of assessing prognosis and may contribute to developing personalized treatment plans for patients with recurrent low-grade glioma.
Journal Article
LETTERS FROM THE PEOPLE
1918
If the cultivation of tobacco were discontinued and its consumption discouraged for the duration of the war, food production would be greatly increased, because there is not only a large proportion of the richest soil in the United States (about 1,446,6600 acres) devoted to its growth, but it...
Newspaper Article
Resolving catastrophic error bursts from cosmic rays in large arrays of superconducting qubits
by
Quintana, Chris
,
Erickson, Catherine
,
Mi, Xiao
in
639/766/483/2802
,
639/766/483/481
,
Algorithms
2022
Scalable quantum computing can become a reality with error correction, provided that coherent qubits can be constructed in large arrays
1
,
2
. The key premise is that physical errors can remain both small and sufficiently uncorrelated as devices scale, so that logical error rates can be exponentially suppressed. However, impacts from cosmic rays and latent radioactivity violate these assumptions. An impinging particle can ionize the substrate and induce a burst of quasiparticles that destroys qubit coherence throughout the device. High-energy radiation has been identified as a source of error in pilot superconducting quantum devices
3
–
5
, but the effect on large-scale algorithms and error correction remains an open question. Elucidating the physics involved requires operating large numbers of qubits at the same rapid timescales necessary for error correction. Here, we use space- and time-resolved measurements of a large-scale quantum processor to identify bursts of quasiparticles produced by high-energy rays. We track the events from their initial localized impact as they spread, simultaneously and severely limiting the energy coherence of all qubits and causing chip-wide failure. Our results provide direct insights into the impact of these damaging error bursts and highlight the necessity of mitigation to enable quantum computing to scale.
Cosmic rays flying through superconducting quantum devices create bursts of excitations that destroy qubit coherence. Rapid, spatially resolved measurements of qubit error rates make it possible to observe the evolution of the bursts across a chip.
Journal Article
Epigenomic signatures underpin the axonal regenerative ability of dorsal root ganglia sensory neurons
2019
Axonal injury results in regenerative success or failure, depending on whether the axon lies in the peripheral or the CNS, respectively. The present study addresses whether epigenetic signatures in dorsal root ganglia discriminate between regenerative and non-regenerative axonal injury. Chromatin immunoprecipitation for the histone 3 (H3) post-translational modifications H3K9ac, H3K27ac and H3K27me3; an assay for transposase-accessible chromatin; and RNA sequencing were performed in dorsal root ganglia after sciatic nerve or dorsal column axotomy. Distinct histone acetylation and chromatin accessibility signatures correlated with gene expression after peripheral, but not central, axonal injury. DNA-footprinting analyses revealed new transcriptional regulators associated with regenerative ability. Machine-learning algorithms inferred the direction of most of the gene expression changes. Neuronal conditional deletion of the chromatin remodeler CCCTC-binding factor impaired nerve regeneration, implicating chromatin organization in the regenerative competence. Altogether, the present study offers the first epigenomic map providing insight into the transcriptional response to injury and the differential regenerative ability of sensory neurons.
Journal Article
Quantum supremacy using a programmable superconducting processor
by
Boixo, Sergio
,
Quintana, Chris
,
Rieffel, Eleanor G.
in
639/766/483
,
639/766/483/481
,
Algorithms
2019
The promise of quantum computers is that certain computational tasks might be executed exponentially faster on a quantum processor than on a classical processor
1
. A fundamental challenge is to build a high-fidelity processor capable of running quantum algorithms in an exponentially large computational space. Here we report the use of a processor with programmable superconducting qubits
2
–
7
to create quantum states on 53 qubits, corresponding to a computational state-space of dimension 2
53
(about 10
16
). Measurements from repeated experiments sample the resulting probability distribution, which we verify using classical simulations. Our Sycamore processor takes about 200 seconds to sample one instance of a quantum circuit a million times—our benchmarks currently indicate that the equivalent task for a state-of-the-art classical supercomputer would take approximately 10,000 years. This dramatic increase in speed compared to all known classical algorithms is an experimental realization of quantum supremacy
8
–
14
for this specific computational task, heralding a much-anticipated computing paradigm.
Quantum supremacy is demonstrated using a programmable superconducting processor known as Sycamore, taking approximately 200 seconds to sample one instance of a quantum circuit a million times, which would take a state-of-the-art supercomputer around ten thousand years to compute.
Journal Article
Exponential suppression of bit or phase errors with cyclic error correction
by
Hilton, Jeremy
,
Boixo, Sergio
,
Quintana, Chris
in
639/766/483/2802
,
639/766/483/481
,
639/925/927/481
2021
Realizing the potential of quantum computing requires sufficiently low logical error rates
1
. Many applications call for error rates as low as 10
−15
(refs.
2
–
9
), but state-of-the-art quantum platforms typically have physical error rates near 10
−3
(refs.
10
–
14
). Quantum error correction
15
–
17
promises to bridge this divide by distributing quantum logical information across many physical qubits in such a way that errors can be detected and corrected. Errors on the encoded logical qubit state can be exponentially suppressed as the number of physical qubits grows, provided that the physical error rates are below a certain threshold and stable over the course of a computation. Here we implement one-dimensional repetition codes embedded in a two-dimensional grid of superconducting qubits that demonstrate exponential suppression of bit-flip or phase-flip errors, reducing logical error per round more than 100-fold when increasing the number of qubits from 5 to 21. Crucially, this error suppression is stable over 50 rounds of error correction. We also introduce a method for analysing error correlations with high precision, allowing us to characterize error locality while performing quantum error correction. Finally, we perform error detection with a small logical qubit using the 2D surface code on the same device
18
,
19
and show that the results from both one- and two-dimensional codes agree with numerical simulations that use a simple depolarizing error model. These experimental demonstrations provide a foundation for building a scalable fault-tolerant quantum computer with superconducting qubits.
Repetition codes running many cycles of quantum error correction achieve exponential suppression of errors with increasing numbers of qubits.
Journal Article
Abundant transcriptomic alterations in the human cerebellum of patients with a C9orf72 repeat expansion
by
Rademakers, Rosa
,
Udine, Evan
,
Dickson, Dennis W.
in
Alternative splicing
,
Amyotrophic lateral sclerosis
,
Amyotrophic Lateral Sclerosis - genetics
2024
The most prominent genetic cause of both amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD) is a repeat expansion in the gene
C9orf72
. Importantly, the transcriptomic consequences of the
C9orf72
repeat expansion remain largely unclear. Here, we used short-read RNA sequencing (RNAseq) to profile the cerebellar transcriptome, detecting alterations in patients with a
C9orf72
repeat expansion. We focused on the cerebellum, since key
C9orf72
-related pathologies are abundant in this neuroanatomical region, yet TDP-43 pathology and neuronal loss are minimal. Consistent with previous work, we showed a reduction in the expression of the
C9orf72
gene and an elevation in homeobox genes, when comparing patients with the expansion to both patients without the
C9orf72
repeat expansion and control subjects. Interestingly, we identified more than 1000 alternative splicing events, including 4 in genes previously associated with ALS and/or FTLD. We also found an increase of cryptic splicing in
C9orf72
patients compared to patients without the expansion and controls. Furthermore, we demonstrated that the expression level of select RNA-binding proteins is associated with cryptic splice junction inclusion. Overall, this study explores the presence of widespread transcriptomic changes in the cerebellum, a region not confounded by severe neurodegeneration, in post-mortem tissue from
C9orf72
patients.
Journal Article