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result(s) for
"Niazi, Imran Khan"
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Melanoma segmentation using deep learning with test-time augmentations and conditional random fields
2022
In a computer-aided diagnostic (CAD) system for skin lesion segmentation, variations in shape and size of the skin lesion makes the segmentation task more challenging. Lesion segmentation is an initial step in CAD schemes as it leads to low error rates in quantification of the structure, boundary, and scale of the skin lesion. Subjective clinical assessment of the skin lesion segmentation results provided by current state-of-the-art deep learning segmentation techniques does not offer the required results as per the inter-observer agreement of expert dermatologists. This study proposes a novel deep learning-based, fully automated approach to skin lesion segmentation, including sophisticated pre and postprocessing approaches. We use three deep learning models, including UNet, deep residual U-Net (ResUNet), and improved ResUNet (ResUNet++). The preprocessing phase combines morphological filters with an inpainting algorithm to eliminate unnecessary hair structures from the dermoscopic images. Finally, we used test time augmentation (TTA) and conditional random field (CRF) in the postprocessing stage to improve segmentation accuracy. The proposed method was trained and evaluated on ISIC-2016 and ISIC-2017 skin lesion datasets. It achieved an average Jaccard Index of 85.96% and 80.05% for ISIC-2016 and ISIC-2017 datasets, when trained individually. When trained on combined dataset (ISIC-2016 and ISIC-2017), the proposed method achieved an average Jaccard Index of 80.73% and 90.02% on ISIC-2017 and ISIC-2016 testing datasets. The proposed methodological framework can be used to design a fully automated computer-aided skin lesion diagnostic system due to its high scalability and robustness.
Journal Article
The validity of smartphone-based spatiotemporal gait measurements during walking with and without head turns: Comparison with the GAITRite® system
by
Suresh, Priyadharshini
,
Taylor, Denise
,
Barbado, David
in
Accelerometer
,
Accelerometers
,
Adult
2024
Smartphone accelerometry has potential to provide clinicians with specialized gait analysis not available in most clinical settings. The Gait&Balance Application (G&B App) uses smartphone accelerometry to assess spatiotemporal gait parameters under two conditions: walking looking straight ahead and walking with horizontal head turns. This study investigated the validity of G&B App gait parameters compared with the GAITRite® pressure-sensitive walkway. Healthy young and older adults (age range 21–85 years) attended a single session where a smartphone was secured over the lumbosacral junction. Data were collected concurrently with the app and GAITRite® systems as participants completed the two walking conditions. Spatiotemporal gait parameters for 54 participants were determined from both systems and agreement evaluated with partial Pearson’s correlation coefficients and limits of agreement. The results demonstrated moderate to excellent validity for G&B App measures of step time (rp 0.97, 95 % CI [0.96, 0.98]), walking speed (rp 0.83 [0.78, 0.87]), and step length (rp 0.74, [0.66, 0.80]) when walking looking straight ahead, and results were comparable with head turns. The validity of walking speed and step length measures was influenced by sex and height. G&B App measures of step length variability, step time variability, step length asymmetry, and step time asymmetry had poor validity. The G&B App has potential to provide valid measures of unilateral and bilateral step time, unilateral and bilateral step length, and walking speed, under two walking conditions in healthy young and older adults. Further research should validate this tool in clinical conditions and optimise the algorithm for demographic characteristics.
Journal Article
NeuroStat: An Open-Source EEG Connectivity Platform for Randomised Controlled Trials
by
Ghani, Usman
,
Pervez, Shahbaz
,
Niazi, Imran Khan
in
artefact removal
,
Automation
,
Brain - physiology
2026
Background: Electroencephalographic (EEG) functional connectivity analysis requires multiple signal-processing, source-modelling, and statistical steps that can limit its adoption in clinician-led randomised controlled trials (RCTs). NeuroStat was developed as a prototype research tool to integrate this workflow; formal usability validation with clinician end-users has not yet been conducted. Methods: NeuroStat is an open-source Python/PyQt6 desktop application that integrates automated artefact removal (a Generalised Eigenvalue Decomposition for Artefact Identification [GEDAI] pathway and a traditional Artefact Subspace Reconstruction (ASR)/Independent Component Analysis (ICA)/ICLabel pathway), boundary element model (BEM) source localisation using the Desikan–Killiany atlas (68 cortical regions), Phase Lag Index (PLI) connectivity estimation across five canonical frequency bands, and RCT-oriented statistical analysis. Evaluation separated sensor-space and source-space claims: a sensor-level simulation (repeated across five independent random seeds) tested preprocessing robustness, a repeated source-space simulation tested recovery of a known cortical parcel-pair contrast after forward projection and inverse reconstruction, a PhysioNet benchmark tested posterior Desikan–Killiany alpha PLI in 20 healthy adults, and an illustrative application to 20 sessions from a published chiropractic RCT demonstrated real-world workflow applicability. Results: In the sensor-level simulation benchmark, the Traditional pathway achieved a mean absolute error of 0.168 ± 0.017 PLI units and root mean squared error of 0.219 ± 0.045 (mean ± SD across five independent random seeds) across all artefact conditions. In the source-space simulation, reconstructed alpha PLI for the known bilateral lateral-occipital parcel pair exceeded anterior control edges across 60 repeated condition runs (mean known-control difference = 0.105 PLI units, 95% CI 0.096–0.114; t(59) = 22.61, p < 0.001). In the PhysioNet source-space benchmark, posterior Desikan–Killiany alpha PLI was higher during eyes-closed than eyes-open rest (Cohen’s d = 0.85, p = 0.001; 16/20 subjects showing the expected direction) after ICLabel-enabled preprocessing. In the pilot RCT application, all 20 sessions completed processing without manual intervention, with default-mode network alpha PLI showing a pre-to-post change of +0.071 in the intervention group versus +0.015 in the active control group. Conclusions: NeuroStat integrates preprocessing, source-space construction, connectivity estimation, and statistical reporting within a parameter-logged desktop workflow for EEG functional connectivity studies. Current evidence supports initial technical feasibility, sensor-level preprocessing robustness for one pathway in controlled simulations, source-space recovery of a known parcel-level contrast, source-space sensitivity to an expected posterior alpha resting-state contrast, and error-free processing across 20 real RCT sessions in a pilot workflow demonstration. Formal usability testing, test–retest reliability analysis, participant-specific source-model validation, and clinical-population validation remain necessary before clinician-facing or trial-deployment claims can be made.
Journal Article
Oracle Upper Bounds on Clean-EEG Recoverability from Single-Channel Decompositions Under EOG/EMG Contamination
by
Niazi, Imran Khan
,
Kalra, Anubha Manju
,
Shaikh, Usman Qamar
in
Algorithms
,
artifact suppression
,
Datasets
2026
Single-channel EEG artifact suppression often relies on signal decomposition; however, it is not always clear how much clean EEG is recoverable from a given decomposition when component weighting is ideal. We present an oracle-based benchmark that characterises this best-case recoverability across common 1-D decomposition families under controlled EOG, EMG, and mixed contamination. This work does not propose a new denoising algorithm; rather, it isolates representation capacity from component-selection heuristics by computing an upper bound on reconstruction quality.
Using EEGdenoiseNet, we constructed a synthetic benchmark of 4500 single-channel 2 s segments (125 Hz; T = 250) by mixing clean EEG with ocular (EOG) and/or cranial EMG exemplars at noise-to-signal ratios (NSRs) spanning -10 to +10 dB (floor -10 dB denotes an absent modality). We evaluated variational mode decomposition (VMD), singular spectrum analysis (SSA), discrete wavelet transform (DWT), and CEEMDAN by decomposing each mixture and reconstructing the clean EEG using a bounded nonnegative linear combination of components obtained via constrained least squares (the oracle).
Under this oracle benchmark, SSA achieved the lowest reconstruction error in most tested conditions, while DWT tended to rank best in milder ocular regimes; VMD performance improved, with an increased mode count at higher computational cost. CEEMDAN exhibited higher latency dominated by ensemble settings.
These results should be interpreted as decomposition-level upper bounds under controlled mixtures, not field-ready denoising performance. The benchmark provides a tool with which to compare representational recoverability across decompositions and to inform the subsequent design of practical component-selection strategies.
Journal Article
Effectiveness of focal muscle vibrations in improving sensorimotor performance, mobility and strength in spinal cord injury population: a systematic review
2025
ObjectiveSpinal cord injury (SCI) results in debilitating sensory, functional deficits and paralysis requiring neurorehabilitation solutions. In this regard, focal muscle vibration (FMV) is an emerging neuro-rehabilitation tool that uses mechanical vibration on muscles/tendons to stimulate underlying nerves and consequently modulate neural pathways. We conducted a systematic review to understand the exact effectiveness of FMVs on the sensorimotor function and mobility/strength in the SCI population.DesignSystematic review using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) approach.Data sourcesPEDro, Springer, PubMed, Science Direct, Cochrane Library and Google Scholar were searched through 15 February 2025.Eligibility criteria for selecting studiesWe included studies adhering to the following population–intervention–comparison–outcomes (PICO) elements. Population: SCI, intervention: FMV, comparison: unexposed controls, outcome: either of sensorimotor function or mobility and strength.Data extraction and synthesisTwo independent reviewers used standardised methods to search, screen and code included studies. Risk of bias was assessed using the Risk Of Bias In Non-randomised Studies - of Interventions (ROBINS-I) scale. Findings were summarised and a narrative synthesis is provided.Results25 studies were included. 9 studies used FMV in the upper limb and 14 in the lower limb. The analysis includes 427 patients with SCI, with a focus on male, chronic SCI cases and a prevalence of North American studies.ConclusionOur systematic review of 25 studies, with 21 (84%) reporting positive outcomes, suggests that FMV may improve sensory perception, motor function, mobility and strength in individuals with SCIs, with benefits observed in both limbs. However, substantial heterogeneity in FMV parameters, study designs, participant characteristics and the high prevalence of serious/critical risk of bias (13/25 studies, 52%) limit definitive conclusions. Further research with optimised protocols, larger sample sizes and longitudinal designs is needed to confirm efficacy and establish clinical guidelines.
Journal Article
EEG signatures change during unilateral Yogi nasal breathing
by
Burns, Georgina
,
Niazi, Imran Khan
,
Taylor, Denise
in
631/1647/1453
,
631/378/1831
,
639/166/985
2022
Airflow through the left-and-right nostrils is said to be entrained by an endogenous nasal cycle paced by both poles of the hypothalamus. Yogic practices suggest, and scientific evidence demonstrates, that right-nostril breathing is involved with relatively higher sympathetic activity (arousal states), while left-nostril breathing is associated with a relatively more parasympathetic activity (stress alleviating state). The objective of this study was to further explore this laterality by controlling nasal airflow and observing patterns of cortical activity through encephalographic (EEG) recordings. Thirty subjects participated in this crossover study. The experimental session consisted of a resting phase (baseline), then a period of unilateral nostril breathing (UNB) using the dominant nasal airway, followed by UNB using the non-dominant nasal airway. A 64-channel EEG was recorded throughout the whole session. The effects of nostril-dominance, and nostril-lateralization were assessed using the power spectral density of the neural activity. The differences in power-spectra and source
localization
were calculated between EEG recorded during UNB and baseline for delta, theta, alpha, beta and gamma bands. Cluster-based permutation tests showed that compared to baseline, EEG spectral power was significantly (1) decreased in all frequency bands for non-dominant nostril UNB, (2) decreased in alpha, beta and gamma bands for dominant nostril UNB, (3) decreased in all bands for left nostril UNB, and (4) decreased in all bands except delta for right nostril UNB. The beta band showed the most widely distributed changes across the scalp. our source localisation results show that breathing with the dominant nostril breathing increases EEG power in the left inferior frontal (alpha band) and left parietal lobule (beta band), whereas non-dominant nostril breathing is related to more diffuse and bilateral effects in posterior areas of the brain.These preliminary findings may stimulate further research in the area, with potential applications to tailored treatment of brain disorders associated with disruption of sympathetic and parasympathetic activity.
Journal Article
Nonlinear EEG Complexity as a Marker of Maladaptive Brain Plasticity in Substance Use Disorders: A Multi-Group Machine Learning Classification Study
2026
Chronic exposure to addictive substances induces persistent alterations in neural dynamics, reflecting maladaptive brain plasticity. While such changes are well documented using neuroimaging techniques, their electrophysiological signatures-particularly those derived from nonlinear EEG complexity-remain insufficiently explored across diverse substance use profiles. This preliminary study aims to investigate whether nonlinear EEG complexity measures can serve as sensitive biomarkers of maladaptive plasticity in substance use disorder (SUD) across multiple substance categories.
A total of 350 participants were included and categorized into seven groups (
= 50 each): six substance use groups (cannabis, heroin, heroin-cannabis, methamphetamine-cannabis, methamphetamine-heroin, and multi-drug) and one control group without a diagnosis of substance use disorder. Resting state EEG signals were recorded using an eight-channel system. Four nonlinear features, Largest Lyapunov Exponent (LLE), Fractal Dimension (FD), Hurst Exponent (HE), and Kolmogorov Complexity (KC) were extracted. Statistical analysis was performed using two-way ANOVA, and classification was conducted using the K Nearest Neighbour (KNN) algorithm.
Significant group differences (
< 0.05) were observed across all nonlinear features. Control participants without a diagnosis of substance use disorder consistently exhibited higher complexity values compared to substance use groups, indicating reduced neural dynamical variability associated with the history of sustained substance uses over multiple years. Region wise analysis revealed that frontal and central cortical areas linked to motor planning and sensorimotor integration were particularly affected. The KNN classifier achieved an accuracy of 98.4%, sensitivity of 100%, and specificity of 96.8%.
Nonlinear EEG complexity measures provide a robust electrophysiological marker of substance induced maladaptive brain plasticity. The observed reduction in complexity reflects impaired neural adaptability, particularly within motor control networks. These findings highlight the potential of EEG based complexity metrics for objective assessment, classification, and neurorehabilitation monitoring in substance use disorders.
Journal Article
Reliability of ankle dorsiflexor muscle strength, rate of force development, and tibialis anterior electromyography after stroke version 3; peer review: 1 approved, 2 approved with reservations
2026
Background
Measures of hemiparetic ankle dorsiflexor muscle strength and rate of force development (RFD) are often used to determine the efficacy of rehabilitation interventions after stroke. However, evidence supporting the reliability of these measures is limited. This brief report provides a secondary analysis investigating the between-session reliability of isometric ankle dorsiflexor muscle strength, rate of force development (RFD), and tibialis anterior electromyography (TA EMG), in people with chronic stroke.
Method
Participants (n=15) completed three maximal isometric contractions of the ankle dorsiflexor muscles as fast as possible using a rigid dynamometer. Tests were repeated seven days later. Outcomes included ankle dorsiflexor isometric maximal voluntary contraction (MVC), RFD in the first 200ms (RFD200ms), time to reach 90% MVC, and peak TA EMG. Data were analysed for 13 participants using intra-class correlation coefficients (ICC) and standard error of the measure percentage (SEM%).
Results
Reliability was higher when analysing the mean of three trials rather than the best of three trials. There was excellent reliability for isometric dorsiflexor MVC (ICC 0.97 [95% CI 0.92, 0.99], SEM% 7%). However, for other outcomes, while the ICC indicated good reliability, the lower bound of the 95% confidence interval of the ICC fell in the moderate range for TA EMG (ICC 0.86 [95% CI 0.60, 0.96], SEM% 25%) and time to reach 90% MVC (ICC 0.80 [95% CI 0.53, 0.93], SEM% 23%) and in the poor range for dorsiflexor RFD200ms (ICC 0.79 [95% CI 0.48, 0.92], SEM% 24%).
Conclusion
The findings raise concerns about the reliability of measures of rapid force production in the dorsiflexor muscles after stroke. Given the functional significance of the ankle dorsiflexors, larger studies should be conducted to further investigate these concerns and explore reliable methods for measuring rapid force production in the hemiparetic dorsiflexor muscles.
Journal Article
Performance Evaluation of Convolutional Neural Network for Hand Gesture Recognition Using EMG
2020
Electromyography (EMG) is a measure of electrical activity generated by the contraction of muscles. Non-invasive surface EMG (sEMG)-based pattern recognition methods have shown the potential for upper limb prosthesis control. However, it is still insufficient for natural control. Recent advancements in deep learning have shown tremendous progress in biosignal processing. Multiple architectures have been proposed yielding high accuracies (>95%) for offline analysis, yet the delay caused due to optimization of the system remains a challenge for its real-time application. From this arises a need for optimized deep learning architecture based on fine-tuned hyper-parameters. Although the chance of achieving convergence is random, however, it is important to observe that the performance gain made is significant enough to justify extra computation. In this study, the convolutional neural network (CNN) was implemented to decode hand gestures from the sEMG data recorded from 18 subjects to investigate the effect of hyper-parameters on each hand gesture. Results showed that the learning rate set to either 0.0001 or 0.001 with 80-100 epochs significantly outperformed (p < 0.05) other considerations. In addition, it was observed that regardless of network configuration some motions (close hand, flex hand, extend the hand and fine grip) performed better (83.7% ± 13.5%, 71.2% ± 20.2%, 82.6% ± 13.9% and 74.6% ± 15%, respectively) throughout the course of study. So, a robust and stable myoelectric control can be designed on the basis of the best performing hand motions. With improved recognition and uniform gain in performance, the deep learning-based approach has the potential to be a more robust alternative to traditional machine learning algorithms.
Journal Article
Machine Learning-Enabled Internet of Things (IoT): Data, Applications, and Industry Perspective
2022
Machine learning (ML) allows the Internet of Things (IoT) to gain hidden insights from the treasure trove of sensed data and be truly ubiquitous without explicitly looking for knowledge and data patterns. Without ML, IoT cannot withstand the future requirements of businesses, governments, and individual users. The primary goal of IoT is to perceive what is happening in our surroundings and allow automation of decision-making through intelligent methods, which will mimic the decisions made by humans. In this paper, we classify and discuss the literature on ML-enabled IoT from three perspectives: data, application, and industry. We elaborate with dozens of cutting-edge methods and applications through a review of around 300 published sources on how ML and IoT work together to play a crucial role in making our environments smarter. We also discuss emerging IoT trends, including the Internet of Behavior (IoB), pandemic management, connected autonomous vehicles, edge and fog computing, and lightweight deep learning. Further, we classify challenges to IoT in four classes: technological, individual, business, and society. This paper will help exploit IoT opportunities and challenges to make our societies more prosperous and sustainable.
Journal Article