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Increasing habitat fragmentation leads to wild populations becoming small, isolated, and threatened by inbreeding depression. However, small populations may be able to purge recessive deleterious alleles as they become expressed in homozygotes, thus reducing inbreeding depression and increasing population viability. We used whole-genome sequences from 57 tigers to estimate individual inbreeding and mutation load in a small–isolated and two large–connected populations in India. As expected, the small–isolated population had substantially higher average genomic inbreeding (F ROH = 0.57) than the large–connected (F ROH = 0.35 and F ROH = 0.46) populations. The small–isolated population had the lowest loss-of-function mutation load, likely due to purging of highly deleterious recessive mutations. The large populations had lower missense mutation loads than the small–isolated population, but were not identical, possibly due to different demographic histories. While the number of the loss-of-function alleles in the small–isolated population was lower, these alleles were at higher frequencies and homozygosity than in the large populations. Together, our data and analyses provide evidence of 1) high mutation load, 2) purging, and 3) the highest predicted inbreeding depression, despite purging, in the small–isolated population. Frequency distributions of damaging and neutral alleles uncover genomic evidence that purifying selection has removed part of the mutation load across Indian tiger populations. These results provide genomic evidence for purifying selection in both small and large populations, but also suggest that the remaining deleterious alleles may have inbreeding-associated fitness costs. We suggest that genetic rescue from sources selected based on genome-wide differentiation could offset any possible impacts of inbreeding depression.

Despite appreciable advances in carnivore ecology, studies on small cats remain limited with carnivore research in India being skewed towards large cats. Small cats are more specialized than their larger cousins in terms of resource selection. Studies on small cat population and habitat preference are critical to evaluate their status to ensure better management and conservation. We estimated abundance of two widespread small cats, the jungle cat, and the rusty-spotted cat, and investigated their habitat associations based on camera trap captures from a central Indian tiger reserve. We predicted fine-scale habitat segregation between these sympatric species as a driver of coexistence. We used an extension of the spatial count model in a Bayesian framework approach to estimate the population density of jungle cat and rusty-spotted cat and used generalized linear models to explore their habitat associations. Densities of rusty-spotted cat and jungle cat were estimated as 6.67 (95% CI 4.07-10.74) and 4.01 (95% CI 2.65-6.12) individuals/100 km.sup.2 respectively. Forest cover and evapotranspiration were positively associated with rusty-spotted cat occurrence whereas both factors had a significant negative relation with jungle cat occurrence. The results directed habitat segregation between these small cats with affinities of rusty-spotted cat and jungle cat towards well-forested and open scrubland areas respectively. Our estimates highlight the widespread applicability of this model for density estimation of species with no individual identification. Moreover, the study outcomes can aid in targeted management decisions and serve as the baseline for species conservation as these models allow robust population estimation of elusive species along with predicting their habitat preferences.

Deforestation and agricultural intensification have resulted in an alarming change in the global land cover over the past 300 years, posing a threat to species conservation. Dhole is a monophyletic, social canid and, being an endangered and highly forest-dependent species, is more prone to the loss of favorable habitat in the Anthropocene. We determined the genetic differentiation and demographic history of dhole across the tiger reserves of Maharashtra using the microsatellite data of 305 individuals. Simulation-based analyses revealed a 77–85% decline in the major dhole sub-populations. Protected areas have provided refuge to the historically declining dhole population resulting in clustering with strong genetic structure in the remnant dhole population. The historical population decline coincides with the extreme events in the landscape over the past 300 years. The study highlights the pattern of genetic differentiation and diversity of a highly forest-dependent species which can be associated with the loss of forest cover outside tiger reserves. It also warrants attention to develop conservation plans for the remnant surviving population of dholes in India.

Chhattisgarh, India, harbours a metapopulation of 250–300 Asian elephants Elephas maximus that has expanded its range from neighbouring states since 2000. Elephants in the state occur across a mosaic of forests interspersed with agricultural settlements, leading to frequent interactions with people, some of which culminate in conflict. We assessed patterns of crop losses as a result of elephant incursions, at two spatial scales. We found widespread crop losses, with 1,426 settlements in and around 10 forest divisions and four protected areas reporting elephant-related crop losses during 2015–2020. At the landscape scale, spanning c. 39,000 km2, intensity of habitat use by elephants, forest cover and number of forest patches explained variations in intensity of crop losses. At a finer spatial scale, covering c. 1,200 km2 of forest–agriculture matrix in Surguja, probability of crop loss was low near roads but high close to forest patches and was also affected by patch heterogeneity. Both male and female elephant groups fed on crops. As areas with high crop losses are also areas used intensively by elephants, management to increase elephant occupancy in relatively large and connected forest patches is imperative, to minimize crop losses and improve elephant conservation. Concomitantly, expansion of elephant range into agricultural areas that lack forests should be discouraged. In forest divisions, options to reduce negative human–elephant interactions include institutionalizing elephant monitoring, transparent and prompt ex gratia payment for crop losses, and the use of portable physical barriers.

Elephant ranges in Asia overlap with human-use areas, leading to frequent and often negative two-way interactions, a fraction of which result in human fatalities. Minimizing such negative interactions rests on gaining a mechanistic understanding of their patterns and underlying processes. In Chhattisgarh (India), a rewilding population of 250–300 elephants that have recently expanded their range from neighbouring states through dispersal has been causing annual losses of >60 human lives. Using logistic regression models, we examined the influences of eight plausible predictors of the occurrence of elephant-related human fatality incidents. We found that 70% of incidents occurred in areas with high-intensity habitat use by elephants; the other 30% were in areas of intermediate and sporadic elephant habitat use. The probability of human fatalities was high along the roads connecting settlements and in areas with frequent house break-ins by elephants, and this probability was also affected by the spatial geometry of forest patches. Immediate practical options to minimize fatal interactions include community-based early-warning systems and the use of portable barriers around settlements. Judicious landscape-level land-use planning aimed at maintaining the resilience of remnant intact elephant habitats will be critical to preventing the dispersal of elephants into suboptimal habitats, which can create complex conflict situations.

Eld's deer ( Rucervus eldii ) with three recognised subspecies ( R. e. eldii, R. e. thamin, and R. e. siamensis ) represents one of the most threatened cervids found in Southeast Asia. The species has experienced considerable range contractions and local extinctions owing to habitat loss and fragmentation, hunting, and illegal trade across its distribution range over the last century. Understanding the patterns of genetic variation is crucial for planning effective conservation strategies. This study investigated the phylogeography, divergence events and systematics of Eld's deer subspecies using the largest mtDNA dataset compiled to date. We also analysed the genetic structure and demographic history of R. e. eldii using 19 microsatellite markers. Our results showed that R. e. siamensis exhibits two divergent mtDNA lineages (mainland and Hainan Island), which diverged around 0.2 Mya (95% HPD 0.1–0.2), possibly driven by the fluctuating sea levels of the Early Holocene period. The divergence between R. e. eldii and R. e. siamensis occurred around 0.4 Mya (95% HPD 0.3–0.5), potentially associated with the adaptations to warm and humid climate with open grassland vegetation that predominated the region. Furthermore, R. e. eldii exhibits low levels of genetic diversity and small contemporary effective population size (median = 7, 4.7–10.8 at 95% CI) with widespread historical genetic bottlenecks which accentuates its vulnerability to inbreeding and extinction. Based on the observed significant evolutionary and systematic distance between Eld’s deer and other species of the genus Rucervus, we propose to classify Eld's deer ( Cervus eldii ) in the genus Cervus , which is in congruent with previous phylogenetic studies. This study provides important conservation implications required to direct the ongoing population recovery programs and planning future conservation strategies.

Large carnivores play an important role in the functioning of ecosystems, yet their conservation remains a massive challenge across the world. Owing to wide‐ranging habits, they encounter various anthropogenic pressures, affecting their movement in different landscape. Therefore, studying how large carnivores adapt their movement to dynamic landscape conditions is vital for management and conservation policy. A total of 26 individuals across 4 species of large carnivores of different sex and age classes (14 Panthera tigris, 3 Panthera pardus, 5 Cuon alpinus, and 4 Canis lupus pallipes) were GPS collared and monitored from 2014–19. We quantified movement parameters (step length and net squared displacement) of four large carnivores in and outside protected areas in India. We tested the effects of human pressures such as human density, road network, and landuse types on the movement of the species. We also examined the configuration of core areas as a strategy to subsist in a human‐dominated landscape using BBMM. Mean displacement of large carnivores varied from 99.35 m/hr for leopards to 637.7 m/hr for wolves. Tigers outside PAs exhibited higher displacement than tigers inside PAs. Moreover, displacement during day–night was significantly different for tigers inside and outside PAs. Similarly, wolf also showed significant difference between day‐night movement. However, no difference in day–night movement was found for leopard and dholes. Anthropogenic factors such as road length and proportion of agriculture within the home range of tigers outside PAs were found to be significantly different. All the habitat variables in the home range showed significant difference between the social canids. The core area size for tiger outside PA and wolf was found greater than PAs. The study on movement of large carnivore species across landscapes is crucial for conservation planning. Our findings can be a starting point for interlinking animal movement and landscape management of large carnivore conservation in the current Anthropocene. The study is about movement parameters of four large carnivores in and outside protected areas in India (tiger, leopard, dhole, and wolf). In this study, we tested the effects of human pressures like human density, road density, and landuse types on the movement of the species. Finally, we examined the configuration of core areas as a strategy to exploit the human‐dominated landscape.

Large carnivores play a crucial role in maintaining the balance of the ecosystem. Successful conservation initiatives have often led to a huge increase in predators which has often led to negative interactions with humans. Without the knowledge of the carrying capacity of the top predator, such decisions become challenging. Here, we have derived a new equation to estimate the carrying capacity of tigers based on the individual prey species density. We used tiger densities and respective prey densities of different protected areas. Relative prey abundance was used instead of absolute prey density as this could be a better surrogate of the prey preference. We used a regression approach to derive the species-wise equation. We have also scaled these coefficients accordingly to control the variation in the standard error (heteroscedasticity) of the tiger density. Furthermore, we have extended this regression equation for different species to different weight classes for more generalized application of the method. The new equations performed considerably better compared to the earlier existing carrying capacity equations. Incorporating the species-wise approach in the equation also reflected the preference of the prey species for the tiger. This is the first carrying capacity equation where the individual prey densities are used to estimate the carnivore population density. The coefficient estimates of the model with the comparison with prey-predator power laws also reflect the differential effect of tigers on different prey species. The carrying capacity estimates will aid in a better understanding of the predator-prey interaction and will advance better management of the top predator.

Endemic to the Indian subcontinent, the sloth bear (Melursus ursinus) is a threatened species, present in fragmented habitats across India. Field techniques such as direct observation and camera trapping alone are not sufficient and may not be explicit enough to understand a monomorphic species like the sloth bear at larger spatial scales. In this study, we looked into the genetic structure, variability and population demographics amongst the extant sloth bear populations in the highly fragmented Vidarbha landscape, using a panel of 13 microsatellite markers with a cumulative PID value of 1.48 × 10−5 PIDsibs. Our results revealed genetic clustering (K = 5) and moderate structuring amongst the study populations. Despite being geographically distant and placed in two different genetic clusters, sloth bears from the Melghat Tiger Reserve and Sahyadri Tiger Reserve shared genetic signatures, indicating connectivity, while migration was detected amongst other study areas as well. The findings from this study can serve as baseline assessment for future genetic monitoring of the species in the human-dominated landscape and assist in managerial decisions to step up protection of fragmented forest patches and reduce human–bear conflicts without compromising on the genetic connectivity.

Studies on resource utilisation by carnivores are essential as they aid in assessing their role in a community, by unravelling predator–prey relationships. Globally, prey depletion is one of the primary causes of declining Asiatic wild dog (dhole) populations. Therefore, it is essential to examine their diet across their range. Our study presents insights into dhole feeding ecology across multiple sites from the central Indian landscape of Maharashtra, India, for the first time. We conducted scat analysis using a subset of genetically identified scats and collected additional data from kills observed while tracking radio-collared dholes and other known packs from 2 study sites. We analysed 861 scats, and 191 dhole kills to identify species and age class of prey. We estimated the relative contribution of various prey, utilising non-linear biomass models of prey consumption. Overall, wild ungulates like sambar and chital were the principal prey in terms of biomass (sambar 61.08%; chital 19.08%) and number of prey consumed (sambar 39.28%; chital 13.83%). An analysis of kill data also suggested that dholes strongly preferred the two deer species; and differential selection of age classes was observed at the 2 study sites. Our study can potentially help manage and conserve this important population of an endangered carnivore.