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21 result(s) for "Ocker, Thomas"
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Developing a Scalable Annotation Method for Large Datasets That Enhances Alarms With Actionability Data to Increase Informativeness: Mixed Methods Approach
Background Alarm fatigue, a multifactorial desensitization of staff to alarms, can harm both patients and health care staff in intensive care units (ICUs), especially due to false and nonactionable alarms. Increasing amounts of routinely collected alarm and ICU patient data are paving the way for training machine learning (ML) models that may help reduce the number of nonactionable alarms, potentially increasing alarm informativeness and reducing alarm fatigue. At present, however, there is no publicly available dataset or process that routinely collects information on alarm actionability (ie, whether an alarm triggers a medical intervention or not), which is a key feature for developing meaningful ML models for alarm management. Furthermore, case-based manual annotation is too slow and resource intensive for large amounts of data. Objective We propose a scalable method to annotate patient monitoring alarms associated with patient-related variables regarding their actionability. While the method is aimed to be used primarily in our institution, other clinicians, scientists, and industry stakeholders could reuse it to build their own datasets. Methods The interdisciplinary research team followed a mixed methods approach to develop the annotation method, using data-driven, qualitative, and empirical strategies. The iterative process consisted of six steps: (1) defining alarm terms; (2) reaching a consensus on an annotation concept and documentation structure; (3) defining physiological alarm conditions, related medical interventions, and time windows to assess; (4) developing mapping tables; (5) creating the annotation rule set; and (6) evaluating the generated content. All decisions were made based on feasibility criteria, clinical relevance, occurrence frequency, data availability and quantity, structure, and storage mode. The annotation guideline development process was preceded by the analysis of the institution’s data and systems, the evaluation of device manuals, and a systematic literature review. Results In a multidisciplinary consensus-based approach, we defined preprocessing steps and a rule-based annotation method to classify alarms as either actionable or nonactionable based on data from the patient data management system. We have presented our experience in developing the annotation method and provided the generated resources. The method focuses on respiratory and medication management interventions and includes 8 general rules in a tabular format that are accompanied by graphical examples. Mapping tables enable handling unstructured information and are referenced in the annotation rule set. Conclusions Our annotation method will enable a large number of alarms to be labeled semiautomatically, retrospectively, and quickly, and will provide information on their actionability based on further patient data. This will make it possible to generate annotated datasets for ML models in alarm management and alarm fatigue research. We believe that our annotation method and the resources provided are universal enough and could be used by others to prepare data for future ML projects, even beyond the topic of alarms.
A repeating fast radio burst associated with a persistent radio source
The dispersive sweep of fast radio bursts (FRBs) has been used to probe the ionized baryon content of the intergalactic medium 1 , which is assumed to dominate the total extragalactic dispersion. Although the host-galaxy contributions to the dispersion measure appear to be small for most FRBs 2 , in at least one case there is evidence for an extreme magneto-ionic local environment 3 , 4 and a compact persistent radio source 5 . Here we report the detection and localization of the repeating FRB 20190520B, which is co-located with a compact, persistent radio source and associated with a dwarf host galaxy of high specific-star-formation rate at a redshift of 0.241 ± 0.001. The estimated host-galaxy dispersion measure of approximately 903 − 111 + 72 parsecs per cubic centimetre, which is nearly an order of magnitude higher than the average of FRB host galaxies 2 , 6 , far exceeds the dispersion-measure contribution of the intergalactic medium. Caution is thus warranted in inferring redshifts for FRBs without accurate host-galaxy identifications. A repeating fast radio burst co-located with a persistent radio source and associated with a dwarf host galaxy of a high star-formation rate has been detected.
International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways
Primary biliary cirrhosis (PBC) is a classical autoimmune liver disease for which effective immunomodulatory therapy is lacking. Here we perform meta-analyses of discovery data sets from genome-wide association studies of European subjects ( n =2,764 cases and 10,475 controls) followed by validation genotyping in an independent cohort ( n =3,716 cases and 4,261 controls). We discover and validate six previously unknown risk loci for PBC ( P combined <5 × 10 −8 ) and used pathway analysis to identify JAK-STAT/IL12/IL27 signalling and cytokine–cytokine pathways, for which relevant therapies exist. Primary biliary cirrhosis is an autoimmune liver disease with poor therapeutic options. Here Cordell et al . a perform meta-analysis of European genome-wide association studies identifying six novel risk loci and a number of potential therapeutic pathways.
Immunohistochemical Expression of Haptoglobin in Skin Lesions of Hidradenitis Suppurativa
Background: Meta-inflammation is a hallmark of hidradenitis suppurativa (HS). Research on meta-inflammation in HS is growing, but there is still no research on haptoglobin as an inflammatory protein in lesional HS skin. This study examines the relationship between haptoglobin expression in HS skin lesions and clinical parameters. Methods: An examination was performed on 44 skin samples from HS patients and 10 healthy skin samples. Clinical parameters were then compared with haptoglobin expression. Results: Median haptoglobin expression was significantly higher in the Hurley stage III lesions compared with milder stages (H-score: 37.6 versus 17.1, p = 0.028). High haptoglobin expression (≥30.8% positive cells) was associated with advanced disease (Hurley stage III: 80% versus 41.7%, p = 0.01), active smoking (80% versus 50%, p = 0.039), increased pain (visual analogue scale: 5 versus 1.5, p = 0.03), and a higher prevalence of diabetes (35% versus 8.3%, p = 0.029) and hypertension (55% versus 25%, p = 0.042). No significant associations were found with the BMI, disease duration, or CRP levels. Conclusions: High haptoglobin expression (positive cells ≥ 30.8%) in a skin lesion is associated with higher HS severity, active smoking, more pain and the comorbidities of diabetes mellitus and arterial hypertension in HS patients.
Improving Model Predictions—Integration of Real-Time Sensor Data into a Running Simulation of an Agent-Based Model
The current trend towards living in big cities contributes to an increased demand for efficient and sustainable space and resource allocation in urban environments. This leads to enormous pressure for resource minimization in city planning. One pillar of efficient city management is a smart intermodal traffic system. Planning and organizing the various kinds of modes of transport in a complex and dynamically adaptive system such as a city is inherently challenging. By deliberately simplifying reality, models can help decision-makers shape the traffic systems of tomorrow. Meanwhile, Smart City initiatives are investing in sensors to observe and manage many kinds of urban resources, making up a part of the Internet of Things (IoT) that produces massive amounts of data relevant for urban planning and monitoring. We use these new data sources of smart cities by integrating real-time data of IoT sensors in an ongoing simulation. In this sense, the model is a digital twin of its real-world counterpart, being augmented with real-world data. To our knowledge, this is a novel instance of real-time correction during simulation of an agent-based model. The process of creating a valid mapping between model components and real-world objects posed several challenges and offered valuable insights, particularly when studying the interaction between humans and their environment. As a proof-of-concept for our implementation, we designed a showcase with bike rental stations in Hamburg-Harburg, a southern district of Hamburg, Germany. Our objective was to investigate the concept of real-time data correction in agent-based modeling, which we consider to hold great potential for improving the predictive capabilities of models. In particular, we hope that the chosen proof-of-concept informs the ongoing politically supported trends in mobility—away from individual and private transport and towards—in Hamburg.
Optical and spin properties of nitrogen vacancy centers in diamond formed along high-energy heavy ion tracks
Exposure of matter to high-energy heavy ions induces defects along the ion trajectories through electronic and nuclear energy loss processes. Defects, including color centers, can recombine or form along latent damage tracks in semiconductors. Latent tracks in diamond were only recently observed. Here we report on color center formation in nitrogen-doped diamond along the latent tracks of 1 GeV gold and uranium ions. We optically observe direct formation of single vacancy related color centers (GR1-centers) along the tracks. Mobile vacancies can form NV-centers with native nitrogen atoms during thermal annealing. Molecular dynamics simulations show that isolated vacancies and vacancy clusters form through electronic stopping processes along ion trajectories. Moreover, by using 1 GeV Au ions with a dilute fluence, we create individually isolated quasi-1D chains of NV-centers, which appear as isolated bright luminescence strings and present competitive electron spin properties compared to a background of NV-centers. Such spin textures can be building blocks for applications in quantum sensing and computing. Exposure to high-energy heavy ions creates defects in semiconductors, modifying their electronic properties. Here, the authors demonstrate the formation of color centers in nitrogen-doped diamond using 1 GeV gold and uranium ions, revealing isolated quasi-1D NV-center chains with promising electron spin properties for quantum sensing and computing applications.
Incorporating Multi-Modal Travel Planning into an Agent-Based Model: A Case Study at the Train Station Kellinghusenstraße in Hamburg
Models can provide valuable decision support in the ongoing effort to create a sustainable and effective modality mix in urban settings. Modern transportation infrastructures must meaningfully combine public transport with other mobility initiatives such as shared and on-demand systems. The increase of options and possibilities in multi-modal travel implies an increase in complexity when planning and implementing such an infrastructure. Multi-agent systems are well-suited for addressing questions that require an understanding of movement patterns and decision processes at the individual level. Such models should feature intelligent software agents with flexible internal logic and accurately represent the core functionalities of new modalities. We present a model in which agents can choose between owned modalities, station-based bike sharing modalities, and free-floating car sharing modalities as they exit the public transportation system and seek to finish their personal multi-modal trip. Agents move on a multi-modal road network where dynamic constraints in route planning are evaluated based on an agent’s query. Modality switch points (MSPs) along the route indicate the locations at which an agent can switch from one modality to the next (e.g., a bike rental station to return a used rental bike and continue on foot). The technical implementation of MSPs within the road network was a central focus in this work. To test their efficacy in a controlled experimental setting, agents optimized only the travel time of their multi-modal routes. However, the functionalities of the model enable the implementation of different optimization criteria (e.g., financial considerations or climate neutrality) and unique agent preferences as well. Our findings show that the implemented MSPs enable agents to switch between modalities at any time, allowing for the kind of versatile, individual, and spontaneous travel that is common in modern multi-modal settings.
Modeling the Future Tree Distribution in a South African Savanna Ecosystem: An Agent-Based Model Approach
Understanding the dynamics of tree species and their demography is necessary for predicting future developments in savanna ecosystems. In this contribution, elephant-tree and firewood collector-tree interactions are compared using a multiagent model. To investigate these dynamics, we compared three different tree species in two plots. The first plot is located in the protected space of Kruger National Park (KNP), South Africa, and the second plot in the rural areas of the Bushbuckridge Municipality, South Africa. The agent-based modeling approach enabled the modeling of individual trees with characteristics such as species, age class, size, damage class, and life history. A similar level of detail was applied to agents that represent elephants and firewood collectors. Particular attention was paid to modeling purposeful behavior of humans in contrast to more instinct-driven actions of elephants. The authors were able to predict future developments by simulating the time period between 2010 and 2050 with more than 500,000 individual trees. Modeling individual trees for a time span of 40 years might yield more detailed information than a simple woody mass aggregation. The results indicate a significant trend toward more and thinner trees together with a notable reduction in mature trees, while the total aboveground biomass appears to stay more or less constant. Furthermore, the KNP scenarios show an increase in young Combretum apiculatum, which may correspond to bush encroachment.