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result(s) for
"Orio, Maylis"
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Coordination polymer structure and revisited hydrogen evolution catalytic mechanism for amorphous molybdenum sulfide
by
Yi, Ren
,
Tran, Thu V.
,
Torelli, Stephane
in
639/301/299/886
,
639/638/77/886
,
Amorphous structure
2016
Molybdenum sulfides are very attractive noble-metal-free electrocatalysts for the hydrogen evolution reaction (HER) from water. The atomic structure and identity of the catalytically active sites have been well established for crystalline molybdenum disulfide (
c
-MoS
2
) but not for amorphous molybdenum sulfide (
a
-MoS
x
), which exhibits significantly higher HER activity compared to its crystalline counterpart. Here we show that HER-active
a
-MoS
x
, prepared either as nanoparticles or as films, is a molecular-based coordination polymer consisting of discrete [Mo
3
S
13
]
2−
building blocks. Of the three terminal disulfide (S
2
2−
) ligands within these clusters, two are shared to form the polymer chain. The third one remains free and generates molybdenum hydride moieties as the active site under H
2
evolution conditions. Such a molecular structure therefore provides a basis for revisiting the mechanism of
a
-MoS
x
catalytic activity, as well as explaining some of its special properties such as reductive activation and corrosion. Our findings open up new avenues for the rational optimization of this HER electrocatalyst as an alternative to platinum.
Molybdenum sulfides are attractive electrocatalysts for the hydrogen evolution reaction. The polymeric structure of amorphous molybdenum sulfide can now be formulated as a coordination polymer based on [Mo
3
S
13
2−
] clusters sharing disulfide ligands.
Journal Article
Structural Features Governing the Metabolic Stability of Tetraethyl-Substituted Nitroxides in Rat Liver Microsomes
by
Peyrot, Fabienne
,
Babić, Nikola
,
Orio, Maylis
in
aminoxyl radical
,
Anaerobic conditions
,
carbon
2023
Nitroxides are potent tools for studying biological systems by electron paramagnetic resonance (EPR). Whatever the application, a certain stability is necessary for successful detection. Since conventional tetramethyl-substituted cyclic nitroxides have insufficient in vivo stability, efforts have recently been made to synthesize more stable, tetraethyl-substituted nitroxides. In our previous study on piperidine nitroxides, the introduction of steric hindrance around the nitroxide moiety successfully increased the resistance to reduction into hydroxylamine. However, it also rendered the carbon backbone susceptible to modifications by xenobiotic metabolism due to increased lipophilicity. Here, we focus on a new series of three nitroxide candidates with tetraethyl substitution, namely with pyrrolidine, pyrroline, and isoindoline cores, to identify which structural features afford increased stability for future probe design and application in in vivo EPR imaging. In the presence of rat liver microsomes, pyrrolidine and pyrroline tetraethyl nitroxides exhibited a higher stability than isoindoline nitroxide, which was studied in detail by HPLC-HRMS. Multiple metabolites suggest that the aerobic transformation of tetraethyl isoindoline nitroxide is initiated by hydrogen abstraction by P450-FeV = O from one of the ethyl groups, followed by rearrangement and further modifications by cytochrome P450, as supported by DFT calculations. Under anaerobic conditions, only reduction by rat liver microsomes was observed with involvement of P450-FeII.
Journal Article
Syntheses and Electrochemical and EPR Studies of Porphyrins Functionalized with Bulky Aromatic Amine Donors
by
Maurel, Vincent
,
Choua, Sylvie
,
Pereira, Ana Mafalda Vaz Martins
in
Chemical Sciences
,
ENDOR
,
EPR spectroscopy
2023
A series of nickel(II) porphyrins bearing one or two bulky nitrogen donors at the meso positions were prepared by using Ullmann methodology or more classical Buchwald–Hartwig amination reactions to create the new C-N bonds. For several new compounds, single crystals were obtained, and the X-ray structures were solved. The electrochemical data of these compounds are reported. For a few representative examples, spectroelectrochemical measurements were used to clarify the electron exchange process. In addition, a detailed electron paramagnetic resonance (EPR) study was performed to estimate the extent of delocalization of the generated radical cations. In particular, electron nuclear double resonance spectroscopy (ENDOR) was used to determine the coupling constants. DFT calculations were conducted to corroborate the EPR spectroscopic data.
Journal Article
EPR Spectroscopy of Cu(II) Complexes: Prediction of g-Tensors Using Double-Hybrid Density Functional Theory
by
Pantazis, Dimitrios A.
,
Orio, Maylis
,
Mitsopoulou, Christiana A.
in
Accuracy
,
Approximation
,
Chemical Sciences
2022
Computational electron paramagnetic resonance (EPR) spectroscopy is an important field of applied quantum chemistry that contributes greatly to connecting spectroscopic observations with the fundamental description of electronic structure for open-shell molecules. However, not all EPR parameters can be predicted accurately and reliably for all chemical systems. Among transition metal ions, Cu(II) centers in inorganic chemistry and biology, and their associated EPR properties such as hyperfine coupling and g-tensors, pose exceptional difficulties for all levels of quantum chemistry. In the present work, we approach the problem of Cu(II) g-tensor calculations using double-hybrid density functional theory (DHDFT). Using a reference set of 18 structurally and spectroscopically characterized Cu(II) complexes, we evaluate a wide range of modern double-hybrid density functionals (DHDFs) that have not been applied previously to this problem. Our results suggest that the current generation of DHDFs consistently and systematically outperform other computational approaches. The B2GP-PLYP and PBE0-DH functionals are singled out as the best DHDFs on average for the prediction of Cu(II) g-tensors. The performance of the different functionals is discussed and suggestions are made for practical applications and future methodological developments.
Journal Article
Cleaving DNA with DNA: Cooperative Tuning of Structure and Reactivity Driven by Copper Ions
2024
A copper‐dependent self‐cleaving DNA (DNAzyme or deoyxyribozyme) previously isolated by in vitro selection has been analyzed by a combination of Molecular Dynamics (MD) simulations and advanced Electron Paramagnetic Resonance (Electron Spin Resonance) EPR/ESR spectroscopy, providing insights on the structural and mechanistic features of the cleavage reaction. The modeled 46‐nucleotide deoxyribozyme in MD simulations forms duplex and triplex sub‐structures that flank a highly conserved catalytic core. The DNA self‐cleaving construct can also form a bimolecular complex that has a distinct substrate and enzyme domains. The highly dynamic structure combined with an oxidative site‐specific cleavage of the substrate are two key‐aspects to elucidate. By combining EPR/ESR spectroscopy with selectively isotopically labeled nucleotides it has been possible to overcome the major drawback related to the “metal‐soup” scenario, also known as “super‐stoichiometric” ratios of cofactors versus substrate, conventionally required for the DNA cleavage reaction within those nucleic acids‐based enzymes. The focus on the endogenous paramagnetic center (Cu2+) here described paves the way for analysis on mixtures where several different cofactors are involved. Furthermore, the insertion of cleavage reaction within more complex architectures is now a realistic perspective towards the applicability of EPR/ESR spectroscopic studies. Within the DNA‐cleaving‐DNA process, copper ions exhibit a “multitasking” role, ranging from stabilizing 3D architectures to production of reactive oxygen species (ROS), mandatory for the DNA cleavage. EPR spectroscopy has disentangled different functions of the metal cofactor(s) both for coordination sphere and mechanistic insights.
Journal Article
How Metal Nuclearity Impacts Electrocatalytic H2 Production in Thiocarbohydrazone-Based Complexes
by
Barrozo, Alexandre
,
Straistari, Tatiana
,
Shova, Sergiu
in
bio-inspiration
,
Catalysts
,
Chemical Sciences
2023
Thiocarbohydrazone-based catalysts feature ligands that are potentially electrochemically active. From the synthesis point of view, these ligands can be easily tailored, opening multiple strategies for optimization, such as using different substituent groups or metal substitution. In this work, we show the possibility of a new strategy, involving the nuclearity of the system, meaning the number of metal centers. We report the synthesis and characterization of a trinuclear nickel-thiocarbohydrazone complex displaying an improved turnover rate compared with its mononuclear counterpart. We use DFT calculations to show that the mechanism involved is metal-centered, unlike the metal-assisted ligand-centered mechanism found in the mononuclear complex. Finally, we show that two possible mechanisms can be assigned to this catalyst, both involving an initial double reduction of the system.
Journal Article
Characterization of a Dinuclear Copper(II) Complex and Its Fleeting Mixed‐Valent Copper(II)/Copper(III) Counterpart
by
Giorgi, Michel
,
Simaan, A. Jalila
,
Gennarini, Federica
in
bioinorganic chemistry
,
Chemical Sciences
,
Coordination chemistry
2017
The synthesis of a dinuclear copper(II) complex, supported by a 1,3‐diamino‐2‐propanol‐based tetraamide ligand, is reported. Structural properties in the solid state and in solution, by means of XRD analysis and NMR spectroscopy, respectively, provide evidence of a highly flexible complex that can display several conformations, leading to the image of the wings of a butterfly. The complex was fully characterized and the redox properties were investigated. Room‐temperature spectro‐electrochemistry was used to monitor the formation of a metastable mono‐oxidized product that displayed an absorption band centered at λ=463 nm. EPR investigation of the low‐temperature, chemically generated, mono‐oxidized product reveals the presence of an intermediate described as a mixed‐valent CuIICuIII species, which is a model of the possible highly oxidizing intermediate in particulate methane monooxygenase. Fleeting species: A flexible dinuclear copper(II) complex based on a tetraamide ligand that resembles a butterfly flapping its wings is characterized, along with its one‐electron oxidized species, which consists of an unstable mixed‐valent copper(II)/copper(III) species (see figure).
Journal Article
Density functional theory
by
Neese, Frank
,
Pantazis, Dimitrios A.
,
Orio, Maylis
in
absorption
,
Biochemistry
,
Biomedical and Life Sciences
2009
Density functional theory (DFT) finds increasing use in applications related to biological systems. Advancements in methodology and implementations have reached a point where predicted properties of reasonable to high quality can be obtained. Thus, DFT studies can complement experimental investigations, or even venture with some confidence into experimentally unexplored territory. In the present contribution, we provide an overview of the properties that can be calculated with DFT, such as geometries, energies, reaction mechanisms, and spectroscopic properties. A wide range of spectroscopic parameters is nowadays accessible with DFT, including quantities related to infrared and optical spectra, X-ray absorption and Mössbauer, as well as all of the magnetic properties connected with electron paramagnetic resonance spectroscopy except relaxation times. We highlight each of these fields of application with selected examples from the recent literature and comment on the capabilities and limitations of current methods.
Journal Article
Nickel-centred proton reduction catalysis in a model of NiFe hydrogenase
2016
Hydrogen production through water splitting is one of the most promising solutions for the storage of renewable energy. [NiFe] hydrogenases are organometallic enzymes containing nickel and iron centres that catalyse hydrogen evolution with performances that rival those of platinum. These enzymes provide inspiration for the design of new molecular catalysts that do not require precious metals. However, all heterodinuclear NiFe models reported so far do not reproduce the Ni-centred reactivity found at the active site of [NiFe] hydrogenases. Here, we report a structural and functional NiFe mimic that displays reactivity at the Ni site. This is shown by the detection of two catalytic intermediates that reproduce structural and electronic features of the Ni-L and Ni-R states of the enzyme during catalytic turnover. Under electrocatalytic conditions, this mimic displays high rates for H
2
evolution (second-order rate constant of 2.5 × 10
4
M
−1
s
−1
; turnover frequency of 250 s
−1
at 10 mM H
+
concentration) from mildly acidic solutions.
[NiFe] hydrogenases are enzymes containing nickel and iron centres that catalyse hydrogen evolution with performances that rival those of platinum catalysts. Now, a NiFe model complex has been reported that mimics the structure and the Ni-centred hydrogen evolution activity found at the active site of [NiFe] hydrogenases.
Journal Article
Electron Spin Resonance of Defects in Spin Chains—o-(DMTTF)2X: A Versatile System Behaving Like Molecular Magnet
by
Pilone, Olivier
,
Zeisner, Julian
,
Fourmigue, Marc
in
Atoms and Molecules in Strong Fields
,
Condensed Matter
,
Continuous radiation
2020
The paper presents the electron paramagnetic resonance study of defects in the spin chain
o
-
(
DMTTF
)
2
X
family using continuous wave and pulsed techniques. The defects in spin chains are strongly correlated and present similar microscopic structure as a molecular magnet. By means of 2D-HYSCORE and DFT calculations, we show a strong reduction of hyperfine coupling between the defects and the nuclear spin bath. We assume that the reduction is due to the Heisenberg exchange interaction which screens the effect of the nuclei.
Journal Article