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In this study we analysed fecal bacterial communities and parasites of three important Indonesian fish species, Epinephelus fuscoguttatus, Epinephelus sexfasciatus and Atule mate. We then compared the biodiversity of bacterial communities and parasites of these three fish species collected in highly polluted Jakarta Bay with those collected in less polluted Indonesian areas of Cilacap (E. sexfasciatus, A. mate) and Thousand Islands (E. fuscoguttatus). In addition, E. fuscoguttatus from net cages in an open water mariculture facility was compared with free living E. fuscoguttatus from its surroundings. Both core and shared microbiomes were investigated. Our results reveal that, while the core microbiomes of all three fish species were composed of fairly the same classes of bacteria, the proportions of these bacterial classes strongly varied. The microbial composition of phylogenetically distant fish species, i.e. A. mate and E. sexfasciatus from Jakarta Bay and Cilacap were more closely related than the microbial composition of more phylogentically closer species, i.e. E. fuscoguttatus, E. sexfasciatus from Jakarta Bay, Cilacap and Thousand Islands. In addition, we detected a weak negative correlation between the load of selected bacterial pathogens, i.e. Vibrio sp. and Photobacterium sp. and the number of endoparasites. In the case of Flavobacterium sp. the opposite was observed, i.e. a weak positive correlation. Of the three recorded pathogenic bacterial genera, Vibrio sp. was commonly found in E. fuscoguttatus from mariculture, and lessly in the vicinity of the net cages and rarely in the fishes from the heavily polluted waters from Jakarta Bay. Flavobacterium sp. showed higher counts in mariculture fish and Photobacteria sp. was the most prominent in fish inside and close to the net cages.

Acanthocephalans are attractive candidates as model organisms for studying the ecology and co-evolutionary history of parasitic life cycles in the marine ecosystem. Adding to earlier molecular analyses of this taxon, a total of 36 acanthocephalans belonging to the classes Archiacanthocephala (3 species), Eoacanthocephala (3 species), Palaeacanthocephala (29 species), Polyacanthocephala (1 species) and Rotifera as outgroup (3 species) were analyzed by using Bayesian Inference and Maximum Likelihood analyses of nuclear 18S rDNA sequence. This data set included three re-collected and six newly collected taxa, Bolbosoma vasculosum from Lepturacanthus savala, Filisoma rizalinum from Scatophagus argus, Rhadinorhynchus pristis from Gempylus serpens, R. lintoni from Selar crumenophthalmus, Serrasentis sagittifer from Johnius coitor, and Southwellina hispida from Epinephelus coioides, representing 5 new host and 3 new locality records. The resulting trees suggest a paraphyletic arrangement of the Echinorhynchida and Polymorphida inside the Palaeacanthocephala. This questions the placement of the genera Serrasentis and Gorgorhynchoides within the Echinorhynchida and not the Polymorphida, necessitating further insights into the systematic position of these taxa based on morphology.

Overfishing is a major threat to the survival of shark species, primarily driven by international trade in high-value fins, as well as meat, liver oil, skin and cartilage. The Convention on the International Trade in Endangered Species of Wild Fauna and Flora (CITES) aims to ensure that commercial trade does not threaten wild species, and several shark species have recently been listed on CITES as part of international efforts to ensure that trade does not threaten their survival. However, as international trade regulations alone will be insufficient to reduce overexploitation of sharks, they must be accompanied by practical fisheries management measures to reduce fishing mortality. To examine which management measures might be practical in the context of a targeted shark fishery, we collected data from 52 vessels across 595 fishing trips from January 2014 to December 2015 at Tanjung Luar fishing port in East Lombok, Indonesia. We recorded 11,920 landed individuals across 42 species, a high proportion of which were threatened and regulated species. Catch per unit effort depended primarily on the number of hooks and type of fishing gear used, and to a lesser degree on month, boat engine power, number of sets and fishing ground. The most significant factors influencing the likelihood of catching threatened and regulated species were month, fishing ground, engine power and hook number. We observed significant negative relationships between standardised catch per unit effort and several indicators of fishing effort, suggesting diminishing returns above relatively low levels of fishing effort. Our results suggest that management measures focusing on fishing effort controls, gear restrictions and modifications and spatiotemporal closures could have significant benefits for the conservation of shark species, and may help to improve the overall sustainability of the Tanjung Luar shark fishery. These management measures may also be applicable to shark fisheries in other parts of Indonesia and beyond, as sharks increasingly become the focus of global conservation efforts.

A major challenge in agriculture, horticulture and aquaponics practices is the reduction of mineral fertilisers and peat to reduce CO 2 emissions and increase sustainability. This study used a three-phase-natural fertiliser, the Humicacid Fiber-Substrate (HFS), made from natural regenerative organic and mineral-fractions (Humus-Mineral-Complex), to reduce the peat content in plant pots for aquaponics farming. Basil ( Ocimum basilicum ) growth was compared with i ) 100% standard media substrate (\"Einheitserde\", white peat 80%, clay 20%), and ii ) 85% \"Einheitserde\" and 15% of HFS under irrigation with aquaculture process waters from an extensive and intensive production of African catfish ( Clarias gariepinus ) under coupled aquaponic conditions. The substitution with 15% HFS and use of intensive fish water resulted in comparable plant growth to a fertiliser solution as control, and in higher leaf width and leaf green weight and lower root dry weight compared with the standard media substrate \"Einheitserde\". Basil leaf chlorophyll content from the aquaponics was higher compared with local market plants. This suggests the possible substitution of the peat substrate \"Einheitserde\" with at least 15% HFS to reduce the natural peat fraction. Further studies on crop-specific substrates are needed to reduce peat in aquaponics farming plant cultivation.

Non-indigenous species that become invasive are one of the main drivers of biodiversity loss worldwide. In various freshwater systems in Europe, populations of native amphipods and fish are progressively displaced by highly adaptive non-indigenous species that can perform explosive range extensions. A total of 40 Ponto-Caspian round gobies Neogobius melanostomus from the Rhine River near Düsseldorf, North Rhine-Westphalia, Germany, were examined for metazoan parasites and feeding ecology. Three metazoan parasite species were found: two Nematoda and one Acanthocephala. The two Nematoda, Raphidascaris acus and Paracuaria adunca, had a low prevalence of 2.5%. The Acanthocephala, Pomphorhynchus tereticollis, was the predominant parasite species, reaching a level of 90.0% prevalence in the larval stage, correlated with fish size. In addition, four invasive amphipod species, Corophium curvispinum (435 specimens), Dikerogammarus villosus (5,454), Echinogammarus trichiatus (2,695) and Orchestia cavimana (1,448) were trapped at the sampling site. Only D. villosus was infected with P. tereticollis at a prevalence of 0.04%. The invasive goby N. melanostomus mainly preys on these non-indigenous amphipods, and may have replaced native amphipods in the transmission of P. tereticollis into the vertebrate paratenic host. This study gives insight into a potential parasite-host system that consists mainly of invasive species, such as the Ponto-Caspian fish and amphipods in the Rhine. We discuss prospective distribution and migration pathways of non-indigenous vertebrate (round goby) and invertebrates (amphipods) under special consideration of parasite dispersal.

The effect of live feed diets containing Brachionus plicatilis (B) and Apocyclops panamensis (A) was investigated on pikeperch larval survival, growth, and fatty acid composition in two experiments (E1 and E2). Up to six different diets were provided to the larvae, in which the letters of the diet names represent the live feed organisms as mentioned above and the subsequent number of feed organisms per larva and day. In E1, start cultures with 35 larvae/L were supplied with two diets (B200 and B100 + A100) 7 days until 10 days post hatch (dph). In E2, 50 larvae/L were fed six diets, B280 + A120, B340 + A60, B400, B420 + A180, B510 + A90, and B600. The highest survival and specific growth rates (SGR) occurred in B200 (E1). In E2, B340 + A60 performed best. A trend of increasing survival rates was found in E1 from 68.9% (B100 + A100) to 71.6% B200 and in E2 from 64.0% (B280 + A120) to 93.7% (B340 + A60). Larval SGR tended to increase with higher shares of dietary B. plicatilis in both experiments. The polyunsaturated fatty acid, linoleic acid (LA), followed the same pattern as survival and SGR increasing until a plateau was reached, indirectly indicating a feeding threshold. B. plicatilis provided the LA to pikeperch larvae, which seemed to play an important role in this feeding period. Consequently, a live feed diet should contain at least 340 B. plicatilis ind. larva−1 day−1 and 6.3 B. plicatilis per milliliter until 10 dph to improve pikeperch larviculture.

Alternative live feeds for small and sensitive fish early life stages such as pikeperch ( Sander lucioperca L., 1758) can improve the larval quantity, quality and performance in aquaculture. Therefore, this study evaluated the cyclopoid copepod Apocyclops panamensis (Marsh, 1913) as live feed for pikeperch larviculture from day 11 post hatch (dph) in two independent experiments. In both experiments, pikeperch larvae had the highest specific growth rate (SGR) when they fed on Brachionus plicatilis until dph 11 and A. panamensis until dph 16–18. SGR was related to a decrease in total fatty acids (FAs), saturated FAs and monounsaturated FAs in pikeperch larvae, indicating their use as energy for growth. Within the polyunsaturated FAs, docosahexaenoic acid (DHA) increased in larvae fed with A. panamensis and coincided with the highest SGR suggesting that DHA is accumulated in larvae as structural FA. Our study demonstrated a suitable pikeperch larval fatty acid composition for growth after feeding A. panamensis compared with Artemia sp. from dph 11 until dph 16 and previously fed with B. plicatilis . Moreover, it highlighted the importance of the dietary PUFAs in pikeperch rearing, specifically of linoleic acid (LA) from dph 4 until dph 11 and of DHA from dph 11 onwards.

An endoparasitic monogenean was identified for the first time from Indonesia. The oesophagus and anterior stomach of the croakers Nibea soldado (Lacépède) and Otolithes ruber (Bloch & Schneider) (n = 35 each) sampled from the South Java coast in May 2011 and Johnius amblycephalus (Bleeker) (n = 2) (all Sciaenidae) from Kedonganan fish market, South Bali coast, in November 2016, were infected with Pseudempleurosoma haywardi sp. nov. Prevalences in the first two croakers were 63% and 46%, respectively, and the two J. amblycephalus harboured three and five individuals. All three croakers represent new hosts for this monogenean genus. We provide infection rates, light microscopical observations, 3D confocal microscopical illustrations, and a morphometric comparison with all congeners. The new species differs in body size, the position and shape of the ovary and testes, and especially in the composition of the dorsal anchor complex, with the dorsal bar being anteriorly concave rather than planar or convex as in its congeners. The dorsal and ventral anchors of this new species are the longest in the genus, whereas the male copulatory organ is the smallest. The first DNA sequences for a member of this genus demonstrate the greatest similarity with endoparasitic freshwater monogeneans from African cichlid fishes. This suggests a freshwater origin for these marine endoparasitic monogeneans.

In the present study, wheatgrass (Triticum aestivum L.) was chosen since fish effluents could be adequate to support its optimal growth. Wheatgrass was irrigated by water from African catfish (Clarias gariepinus) production under two stocking densities, namely extensive aquaculture unit (EAU) and intensive aquaculture unit (IAU), and tap water mixed with fertilizer (Control) in combination with three horticultural substrates: 100% coconut fibers (C), 70% coconut fibers + 30% perlite (CP), and 50% perlite + 50% vermiculite (PV) in an ebb-and-flow system. Different plant growth parameters, including nutrient contents, were evaluated and discussed. The results showed that regarding irrigation water, shoot dry mass was significantly higher in fish water groups. The root–shoot ratio was significantly higher in Control. The highest SPAD index was discovered in IAU. Regarding substrates, the root–shoot ratio was significantly low in C. Vitamin and mineral production reached mainly the highest concentrations in the combination of fish water with different substrates. In conclusion, irrigation water from IAU and coconut fibers were sufficient for optimal wheatgrass growth; meanwhile, IAU effluents showed a positive influence on vitamin production. Our study demonstrates the potential of aquaponics as a more sustainable way of producing superfoods.

In this study, the growth and welfare of the African catfish (Clarias gariepinus, Burchell 1822) were investigated under industrial farming conditions. For this purpose, the growing success (cm, g) and typical stress related parameters (glucose-, lactate-, cortisol-concentrations, growth hormone, HSI-liver index) were investigated on the African catfish (102–841 g) in relation to an external stressor (working light and noise) and different feeding regimes (day, night, and day and night feeding) over 83 days. As no significant effects were found among the experimental feeding treatments in relation to the growth performance and investigated stress parameters, the time of feeding seems to have less impact to the production success and stress reactions as suggested before. Regarding our results, the effect of feeding conditioning could have played a strong factor likewise the ageing process of the reared fish species which is known to be rather photophobic. Therefore, the factor of conditioning and its influence to the time shift in feeding regimes and the impact of noise and light stressors during feeding should be investigated separately in future experiments to obtain further results in this context and clarify the validity of the best feeding conditions for African catfish.