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result(s) for
"Parente, Manuela"
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Gaps in DNA sequence libraries for Macaronesian marine macroinvertebrates imply decades till completion and robust monitoring
by
Parente, Manuela I.
,
Costa, Filipe O.
,
Vieira, Pedro E.
in
Accuracy
,
Aquatic habitats
,
Archipelagoes
2021
Aim
DNA metabarcoding has great potential to improve biomonitoring in island's marine ecosystems, which are highly vulnerable to global change and non‐indigenous species (NIS) introductions. However, the depth and accuracy of the taxonomic identifications are mainly dependent on reference libraries containing representative and reliable sequences for the targeted species. In this study, we evaluated the gaps in the availability of DNA sequences and their accuracy for macroinvertebrates inhabiting Macaronesia's shallow marine habitats.
Location
Macaronesia (Azores, Madeira, Selvagens, Canaries).
Methods
Checklists of marine invertebrates occurring above 50 m depth were compiled using public databases and published checklists. The availability of cytochrome c oxidase subunit I (COI) and 18S rRNA (18S) gene sequences was verified in BOLD and GenBank. Finally, COI data were audited to check the congruence between morphospecies and Barcode Index Numbers (BINs).
Results
The taxonomic coverage of different phyla was greater for COI but unbalanced and variable among archipelagos. NIS were better represented in genetic databases (up to 73% and 59%, for COI and 18S, respectively) than native species (up to 47% and 31%, for COI and 18S, respectively). NIS displayed a higher number of discordant records, and native species, a higher quantity of cases of multiple BINs. Notably, DNA sequences generated from specimens collected from Macaronesia were found in less than 10% of the species. Projection of the rates of accretion of DNA sequences suggests that decades will be needed to complete these reference libraries.
Main conclusions
The level of completion of reference libraries for Macaronesia's marine macroinvertebrates is generally poor. Without a solid effort to speed up the production of sequence data (i.e. generate more DNA barcodes), the ability to employ DNA‐based biomonitoring of such vulnerable fauna is compromised. The high levels of suspected hidden diversity further deepen the expected gaps and reinforce the vulnerability of this endemism‐rich fauna.
Journal Article
Improved phylogeny of brown algae Cystoseira (Fucales) from the Atlantic-Mediterranean region based on mitochondrial sequences
2019
Cystoseira is a common brown algal genus widely distributed throughout the Atlantic and Mediterranean regions whose taxonomical assignment of specimens is often hampered by intra- and interspecific morphological variability. In this study, three mitochondrial regions, namely cytochrome oxidase subunit 1 (COI), 23S rDNA (23S), and 23S-tRNAVal intergenic spacer (mt-spacer) were used to analyse the phylogenetic relationships of 22 Cystoseira taxa (n = 93 samples). A total of 135 sequences (48 from COI, 43 from 23S and 44 from mt-spacer) were newly generated and analysed together with Cystoseira sequences (9 COI, 31 23S and 35 mt-spacer) from other authors. Phylogenetic analysis of these three markers identified 3 well-resolved clades and also corroborated the polyphyletic nature of the genus. The resolution of Cystoseira taxa within the three clades improves significantly when the inclusion of specimens of related genera was minimized. COI and mt-spacer markers resolved the phylogeny of some of the Cystoseira taxa, such as the C. baccata, C. foeniculacea and C. usneoides. Furthermore, trends between phylogeny, embryonic development and available chemotaxonomic classifications were identified, showing that phylogenetic, chemical and morphological data should be taken into account to study the evolutionary relationships among the algae currently classified as Cystoseira. The resolution of Cystoseira macroalgae into three well supported clades achieved here is relevant for a more accurate isolation and identification of natural compounds and the implementation of conservation measures for target species.
Journal Article
Learning Objects in the Educational Context: The Perspective of Teachers in the Azores
by
Parente, Manuela I.
,
Rodrigues, Ana
,
Mendes, Armando B.
in
Behavioral Objectives
,
Classrooms
,
COVID-19
2022
This paper seeks to identify the pedagogical resources used by kindergarten, primary and secondary teachers in Azores Islands. Additionally, an investigation will be made into how these resources are mobilized in teachers’ pedagogical practice, with the aim of understanding to what extent digital resources, particularly learning objects, are present in schools. For this purpose, a study was developed, which included a questionnaire survey conducted online, and sent to teachers in 2021/22. A total of 426 answers allowed us to conclude that the use of pedagogical resources is still far from the current and emerging need to mobilize digital resources, particularly learning objects, as a tool to enhance meaningful learning.
Journal Article
Marine algal flora of Santa Maria Island, Azores
by
Parente, Manuela
,
Prestes, Afonso
,
Resendes, Roberto
in
Aquatic biology
,
Azores
,
biodiversity
2021
The algal flora of the Island of Santa Maria (eastern group of the Azores archipelago) has attracted interest of researchers on past occasions (Drouët 1866, Agardh 1870, Trelease 1897, Schmidt 1931, Ardré et al. 1974, Fralick and Hehre 1990, Neto et al. 1991, Morton and Britton 2000, Amen et al. 2005, Wallenstein and Neto 2006, Tittley et al. 2009, Wallenstein et al. 2009a, Wallenstein et al. 2010, Botelho et al. 2010, Torres et al. 2010, León-Cisneros et al. 2011, Martins et al. 2014, Micael et al. 2014, Rebelo et al. 2014, Ávila et al. 2015, Ávila et al. 2016, Machín-Sánchez et al. 2016, Uchman et al. 2016, Johnson et al. 2017, Parente et al. 2018). Nevertheless, the Island macroalgal flora is not well-known as published information reflects limited collections obtained in short-term visits by scientists. To overcome this, a thorough investigation, encompassing collections and presence data recording, was undertaken at both the littoral and sublittoral levels down to a depth of approximately 40 m, covering an area of approximately 64 km
2
. The resultant taxonomic records are listed in the present paper which also provides information on species ecology and occurrence around the Island, improving, thereby, the knowledge of the Azorean macroalgal flora at both local and regional scales.
A total of 2329 specimens (including some taxa identified only to genus level) belonging to 261 taxa of macroalgae are registered, comprising 152 Rhodophyta, 43 Chlorophyta and 66 Ochrophyta (Phaeophyceae). Of these, 174 were identified to species level (102 Rhodophyta, 29 Chlorophyta and 43 Ochrophyta), encompassing 52 new records for the Island (30 Rhodophyta, 9 Chlorophyta and 13 Ochrophyta), 2 Macaronesian endemics (
Laurencia viridis
Gil-Rodríguez & Haroun; and
Millerella tinerfensis
(Seoane-Camba) S.M.Boo & J.M.Rico), 10 introduced (the Rhodophyta
Acrothamnion preissii
(Sonder) E.M.Wollaston,
Antithamnion hubbsii
E.Y.Dawson,
Asparagopsis armata
Harvey,
Bonnemaisonia hamifera
Hariot,
Melanothamnus harveyi
(Bailey) Díaz-Tapia & Maggs,
Scinaia acuta
M.J.Wynne and
Symphyocladia marchantioides
(Harvey) Falkenberg; the Chlorophyta Codium fragile subsp. fragile (Suringar) Hariot; and the Ochrophyta
Hydroclathrus tilesii
(Endlicher) Santiañez & M.J.Wynne, and
Papenfussiella kuromo
(Yendo) Inagaki) and 18 species of uncertain status (11 Rhodophyta, 3 Chlorophyta and 4 Ochrophyta).
Journal Article
Marine algal flora of São Miguel Island, Azores
by
León-Cisneros, Karla
,
Parente, Manuela
,
Milla-Figueras, David
in
Aquatic biology
,
Azores
,
biodiversity
2021
The macroalgal flora of the Island of São Miguel (eastern group of the Azores Archipelago) has attracted the interest of many researchers in the past, the first publications going back to the nineteenth century. Initial studies were mainly taxonomic, resulting in the publication of a checklist of the Azorean benthic marine algae. Later, the establishment of the University of the Azores on the Island permitted the logistic conditions to develop both temporal studies and long-term research and this resulted in a significant increase on research directed at the benthic marine algae and littoral communities of the Island and consequent publications.
Prior to the present paper, the known macroalgal flora of São Miguel Island comprised around 260 species. Despite this richness, a significant amount of the research was never made public, notably Masters and PhD theses encompassing information regarding presence data recorded at littoral and sublittoral levels down to a depth of approximately 40 m around the Island and the many collections made, which resulted in vouchers deposited in the AZB Herbarium Ruy Telles Palhinha and the LSM- Molecular Systematics Laboratory at the Faculty of Sciences and Technology of the University of the Azores.
The present publication lists the macroalgal taxonomic records, together with information on their ecology and occurrence around São Miguel Island, improving the knowledge of the Azorean macroalgal flora at local and regional scales.
A total of 12,781 specimens (including some identified only to genus) belonging to 431 taxa of macroalgae are registered, comprising 284 Rhodophyta, 59 Chlorophyta and 88 Ochrophyta (Phaeophyceae). Of these, 323 were identified to species level (212 Rhodophyta, 48 Chlorophyta and 63 Ochrophyta), of which 61 are new records for the Island (42 Rhodophyta, 9 Chlorophyta and 10 Ochrophyta), one an Azorean endemic (Predaea feldmannii subsp. azorica Gabriel), five are Macaronesian endemisms (the red algae
Botryocladia macaronesica
Afonso-Carrillo, Sobrino, Tittley & Neto,
Laurencia viridis
Gil-Rodríguez & Haroun,
Millerella tinerfensis
(Seoane-Camba) S.M.Boo & J.M.Rico,
Phyllophora gelidioides
P.Crouan & H.Crouan ex Karsakoff and the green alga
Codium elisabethiae
O.C.Schmidt), 19 are introduced species (15 Rhodophyta, two Chlorophyta and two Ochrophyta) and 32 are of uncertain status (21 Rhodophyta, five Chlorophyta and six Ochrophyta).
Journal Article
Marine algal flora of Flores and Corvo Islands, Azores
by
Parente, Manuela
,
Prestes, Afonso
,
Resendes, Roberto
in
Aquatic biology
,
Azores
,
biodiversity
2021
The algal flora of the western group of the Azores archipelago (Islands of Flores and Corvo) has attracted the interest of many researchers on numerous past occasions (such as Drouet 1866, Trelease 1897, Gain 1914, Schmidt 1929, Schmidt 1931, Azevedo et al. 1990, Fralick and Hehre 1990, Neto and Azevedo 1990, Neto and Baldwin 1990, Neto 1996, Neto 1997, Neto 1999, Tittley and Neto 1996, Tittley and Neto 2000, Tittley and Neto 2005, Tittley and Neto 2006, Azevedo 1998, Azevedo 1999, Tittley et al. 1998, Dionísio et al. 2008, Neto et al. 2008). Despite this interest, the macroalgal flora of the Islands cannot be described as well-known with the published information reflecting limited collections preformed in short-term visits by scientists. To overcome this, a thorough investigation, encompassing collections and presence data recording, has been undertaken for both the littoral and sublittoral regions, down to a depth of approximately 40 m, covering a relatively large area on both Islands (approximately 143 km
2
for Flores and 17 km
2
for Corvo).
This paper lists the resultant taxonomic records and provides information on species ecology and occurrence around both these Islands, thereby improving the knowledge of the Azorean macroalgal flora at both local and regional scales.
For the Island of Flores, a total of 1687 specimens (including some taxa identified only to genus level) belonging to 196 taxa of macroalgae are registered, comprising 120 Rhodophyta, 35 Chlorophyta and 41 Ochrophyta (Phaeophyceae). Of these taxa, 128 were identified to species level (80 Rhodophyta, 22 Chlorophyta and 26 Ochrophyta), encompassing 37 new records for the Island (20 Rhodophyta, 6 Chlorophyta and 11 Ochrophyta); two Macaronesian endemics (
Laurencia viridis
Gil-Rodríguez & Haroun and
Millerella tinerfensis
(Seoane-Camba) S.M.Boo & J.M.Rico); six introduced (the Rhodophyta
Asparagopsis armata
Harvey,
Neoizziella divaricata
(C.K.Tseng) S.-M.Lin, S.-Y.Yang & Huisman and
Symphyocladia marchantioides
(Harvey) Falkenberg; the Chlorophyta Codium fragile subsp. fragile (Suringar) Hariot; and the Ochrophyta
Hydroclathrus tilesii
(Endlicher) Santiañez & M.J.Wynne and
Papenfussiella kuromo
(Yendo) Inagaki); and 14 species of uncertain status (10 Rhodophyta, two Chlorophyta and two Ochrophyta).
For the Island of Corvo, a total of 390 specimens distributed in 56 taxa of macroalgae are registered, comprising 30 Rhodophyta, nine Chlorophyta and 17 Ochrophyta (Phaeophyceae). Whilst a number of taxa were identified only to the genus level, 43 were identified to species level (22 Rhodophyta, eight Chlorophyta and 13 Ochrophyta), comprising 22 new records for the Island (nine Rhodophyta, four Chlorophyta and nine Ochrophyta), two introduced species (the Rhodophyta
Asparagopsis armata
and the Chlorophyta Codium fragile subsp. fragile and seven species of uncertain status (five Rhodophyta and two Ochrophyta).
Journal Article
Tracking macroalgae introductions in North Atlantic oceanic islands
2014
The Azores archipelago was selected as a case study since there are few studies on macroalgae introduction in oceanic islands. While at a global scale, around 3 % of macroalgae are considered non-indigenous; in the remote oceanic islands of the Azores, over 6 % of the marine algal flora is non-indigenous. The taxa distribution pattern of non-indigenous species in the Azores is significantly different from the distribution pattern in the globe. The most representative group was Rhodophyta species, being 84 % of the total non-indigenous macroalgae, mainly introduced via maritime traffic. This study highlights the vulnerability of remote islands to the introduction of macroalgae and the need to develop further studies on other archipelagos to understand whether the observed vulnerability is generally characteristic of oceanic islands. The development of local monitoring and mitigation programs and the necessity of regulatory and preventive measures for the maritime traffic vector are strongly suggested.
Journal Article
Species gap analysis in DNA barcode reference libraries of marine non-indigenous species in the Azores archipelago
2019
Abstract only
Journal Article
Environmental coastal research: a systematic review for Azores and Cabo Verde, two peripherical Macaronesian archipelagos
by
Torres, Paulo
,
Parente, Manuela Isabel
,
Lopes, Evandro
in
Archipelagoes
,
Azores
,
Biodiversity
2023
There is a strong link between humans and the coastal zone, as it provides important services and resources. This paper aims to determine the existing environmental coastal research status in the Azores and Cabo Verde since research is essential for any decision support system. Some tools are fundamental to ensure the viability of the marine environments, such as Integrated Coastal Zone Management (ICZM), Marine Protected Areas (MPAs), and Marine Spatial Planning (MSP), which rely on existing knowledge. Effective implementation of marine plans can increase by developing a multi-perspective knowledge approach. This paper presents a systematic review of the archipelagos of the Azores and Cabo Verde through a comparative meta-analysis of the literature based on the PRISMA report to better understand the focus and status of research related to coastal zones, within and outside MPAs, along with marine spatial planning and management in the two socio-economic contexts. This will help to identify common issues, trends over the years, successes, and challenges, highlighting the specific interests of each country, identifying the knowledge gaps, promoting mutual learning, and pointing out possible paths for future convergence toward sustainable use of the ecosystems and conservation goals. Differences were found between the research made in both archipelagos, lacking research on important disciplines (reproduction, behavior, population dynamics, climate change, etc.), in Cabo Verde, compared to the Azores. This study also reveals that some research fields still need to be pushed forward to have broader knowledge in both areas.
Journal Article
Taxonomic studies in the Schizymeniaceae (Nemastomatales, Rhodophyta): on the identity of Schizymenia sp. in the Azores and the generic placement of Nemastoma confusum
2011
Gabriel D., Schils T., Parente M.I., Draisma S.G.A., Neto A.I. and Fredericq S. 2011. Taxonomic studies in the Schizymeniaceae (Nemastomatales, Rhodophyta): on the identity of Schizymenia sp. in the Azores and the generic placement of Nemastoma confusum. Phycologia 50: 109-121. DOI: 10.2216/09-67.1
Comparative rbcL sequence analysis indicates that the species going under the name Schizymenia dubyi in the Azores should be referred to as S. apoda. Sequences of Schizymenia specimens from China and Namibia were also identified as S. apoda, of which the type locality is the Cape Province in South Africa. Schizymenia dubyi, described from Atlantic France, is clearly a distinct species that we here report for Japan and Sicily in the Mediterranean Sea. Both Schizymenia species, along with an unreported species from Japan, are distinct from S. pacifica described from Washington, in the Pacific Coast of North America. Secondary pit connections were observed in gametophytes of S. apoda from the Azores, a previously unknown character for the Nemastomatales. Examination of type material of Nemastoma confusum indicates that this species, currently placed in the Nemastomataceae, should be transferred to the genus Platoma in the Schizymeniaceae. A morphological comparison between Platoma confusum (Kraft & John) comb. nov. with descriptions of P. cyclocolpum and P. chrysymenioides suggests that the three species are closely related.
Journal Article