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result(s) for
"Park, Homin"
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Assessing the reliability of point mutation as data augmentation for deep learning with genomic data
by
De Neve, Wesley
,
Ozbulak, Utku
,
Depuydt, Stephen
in
Algorithms
,
Amino acids
,
Artificial neural networks
2024
Background
Deep neural networks (DNNs) have the potential to revolutionize our understanding and treatment of genetic diseases. An inherent limitation of deep neural networks, however, is their high demand for data during training. To overcome this challenge, other fields, such as computer vision, use various data augmentation techniques to artificially increase the available training data for DNNs. Unfortunately, most data augmentation techniques used in other domains do not transfer well to genomic data.
Results
Most genomic data possesses peculiar properties and data augmentations may significantly alter the intrinsic properties of the data. In this work, we propose a novel data augmentation technique for genomic data inspired by biology: point mutations. By employing point mutations as substitutes for codons, we demonstrate that our newly proposed data augmentation technique enhances the performance of DNNs across various genomic tasks that involve coding regions, such as translation initiation and splice site detection.
Conclusion
Silent and missense mutations are found to positively influence effectiveness, while nonsense mutations and random mutations in non-coding regions generally lead to degradation. Overall, point mutation-based augmentations in genomic datasets present valuable opportunities for improving the accuracy and reliability of predictive models for DNA sequences.
Journal Article
Accurate Driver Detection Exploiting Invariant Characteristics of Smartphone Sensors
by
Shin, Kyoosik
,
Park, Taejoon
,
Ahn, DaeHan
in
Automobile safety
,
built-in smartphone sensors
,
Distracted driving
2019
Distracted driving jeopardizes the safety of the driver and others. Numerous solutions have been proposed to prevent distracted driving, but the number of related accidents has not decreased. Such a deficiency comes from fragile system designs where drivers are detected exploiting sensory features from strictly controlled vehicle-riding actions and unreliable driving events. We propose a system called ADDICT (Accurate Driver Detection exploiting Invariant Characteristics of smarTphone sensors), which identifies the driver utilizing the inconsistency between gyroscope and magnetometer dynamics and the interplay between electromagnetic field emissions and engine startup vibrations. These features are invariantly observable regardless of smartphone positions and vehicle-riding actions. To evaluate the feasibility of ADDICT, we conducted extensive experiments with four participants and three different vehicles by varying vehicle-riding scenarios. Our evaluation results demonstrated that ADDICT identifies the driver’s smartphone with 89.1% average accuracy for all scenarios and >85% under the extreme scenario, at a marginal cost of battery consumption.
Journal Article
Reliable Identification of Vehicle-Boarding Actions Based on Fuzzy Inference Syste
2017
Existing smartphone-based solutions to prevent distracted driving suffer from inadequate system designs that only recognize simple and clean vehicle-boarding actions, thereby failing to meet the required level of accuracy in real-life environments. In this paper, exploiting unique sensory features consistently monitored from a broad range of complicated vehicle-boarding actions, we propose a reliable and accurate system based on fuzzy inference to classify the sides of vehicle entrancebyleveragingbuilt-insmartphonesensorsonly. Theresultsofourcomprehensiveevaluation on three vehicle types with four participants demonstrate that the proposed system achieves 91.1%∼94.0% accuracy, outperforming other methods by 26.9%∼38.4% and maintains at least 87.8 %accuracy regardless of smartphone positions and vehicle types.
Journal Article
Energy-Efficient Privacy Protection for Smart Home Environments Using Behavioral Semantics
by
Park, Taejoon
,
Basaran, Can
,
Son, Sang
in
Actigraphy - methods
,
activities of daily living
,
Algorithms
2014
Research on smart environments saturated with ubiquitous computing devices is rapidly advancing while raising serious privacy issues. According to recent studies, privacy concerns significantly hinder widespread adoption of smart home technologies. Previous work has shown that it is possible to infer the activities of daily living within environments equipped with wireless sensors by monitoring radio fingerprints and traffic patterns. Since data encryption cannot prevent privacy invasions exploiting transmission pattern analysis and statistical inference, various methods based on fake data generation for concealing traffic patterns have been studied. In this paper, we describe an energy-efficient, light-weight, low-latency algorithm for creating dummy activities that are semantically similar to the observed phenomena. By using these cloaking activities, the amount of fake data transmissions can be flexibly controlled to support a trade-off between energy efficiency and privacy protection. According to the experiments using real data collected from a smart home environment, our proposed method can extend the lifetime of the network by more than 2× compared to the previous methods in the literature. Furthermore, the activity cloaking method supports low latency transmission of real data while also significantly reducing the accuracy of the wireless snooping attacks.
Journal Article
Reliable Identification of Vehicle-Boarding Actions Based on Fuzzy Inference System
2017
Existing smartphone-based solutions to prevent distracted driving suffer from inadequate system designs that only recognize simple and clean vehicle-boarding actions, thereby failing to meet the required level of accuracy in real-life environments. In this paper, exploiting unique sensory features consistently monitored from a broad range of complicated vehicle-boarding actions, we propose a reliable and accurate system based on fuzzy inference to classify the sides of vehicle entrance by leveraging built-in smartphone sensors only. The results of our comprehensive evaluation on three vehicle types with four participants demonstrate that the proposed system achieves 91.1%∼94.0% accuracy, outperforming other methods by 26.9%∼38.4% and maintains at least 87.8% accuracy regardless of smartphone positions and vehicle types.
Journal Article
Know Your Self-supervised Learning: A Survey on Image-based Generative and Discriminative Training
by
Boga, Beril
,
Arnout Van Messem
,
De Neve, Wesley
in
Best practice
,
Clustering
,
Computer vision
2023
Although supervised learning has been highly successful in improving the state-of-the-art in the domain of image-based computer vision in the past, the margin of improvement has diminished significantly in recent years, indicating that a plateau is in sight. Meanwhile, the use of self-supervised learning (SSL) for the purpose of natural language processing (NLP) has seen tremendous successes during the past couple of years, with this new learning paradigm yielding powerful language models. Inspired by the excellent results obtained in the field of NLP, self-supervised methods that rely on clustering, contrastive learning, distillation, and information-maximization, which all fall under the banner of discriminative SSL, have experienced a swift uptake in the area of computer vision. Shortly afterwards, generative SSL frameworks that are mostly based on masked image modeling, complemented and surpassed the results obtained with discriminative SSL. Consequently, within a span of three years, over \\(100\\) unique general-purpose frameworks for generative and discriminative SSL, with a focus on imaging, were proposed. In this survey, we review a plethora of research efforts conducted on image-oriented SSL, providing a historic view and paying attention to best practices as well as useful software packages. While doing so, we discuss pretext tasks for image-based SSL, as well as techniques that are commonly used in image-based SSL. Lastly, to aid researchers who aim at contributing to image-focused SSL, we outline a number of promising research directions.
SalienTrack: providing salient information for semi-automated self-tracking feedback with model explanations
2022
Self-tracking can improve people's awareness of their unhealthy behaviors and support reflection to inform behavior change. Increasingly, new technologies make tracking easier, leading to large amounts of tracked data. However, much of that information is not salient for reflection and self-awareness. To tackle this burden for reflection, we created the SalienTrack framework, which aims to 1) identify salient tracking events, 2) select the salient details of those events, 3) explain why they are informative, and 4) present the details as manually elicited or automatically shown feedback. We implemented SalienTrack in the context of nutrition tracking. To do this, we first conducted a field study to collect photo-based mobile food tracking over 1-5 weeks. We then report how we used this data to train an explainable-AI model of salience. Finally, we created interfaces to present salient information and conducted a formative user study to gain insights about how SalienTrack could be integrated into an interface for reflection. Our key contributions are the SalienTrack framework, a demonstration of its implementation for semi-automated feedback in an important and challenging self-tracking context and a discussion of the broader uses of the framework.
A fully-digital semi-rotational frequency detection algorithm for bang-bang CDRs
2019
This work presents a new frequency acquisition method using semi-rotational frequency detection (SRFD) algorithm for a reference-less clock and data recovery (CDR) in a serial-link receiver. The proposed SRFD algorithm classifies the bang-bang phase detector(BBPD) outputs to estimate the current phase state, and detects the frequency mismatch between the input data and the sampling clock. The VCO-track path in a digital loop filter (DLF) enables online calibration of a drifted frequency of VCO caused by temperature or voltage variation after a frequency acquisition. The proposed algorithm can be implemented as a digitally-synthesized circuit, lowering design efforts for referenceless CDRs. A 10 Gbps transceiver IC with the proposed algorithm, fabricated in a 65nm CMOS process, demonstrates successful recovery of the input phase without any reference clock.
Development of machine learning model for diagnostic disease prediction based on laboratory tests
2021
The use of deep learning and machine learning (ML) in medical science is increasing, particularly in the visual, audio, and language data fields. We aimed to build a new optimized ensemble model by blending a DNN (deep neural network) model with two ML models for disease prediction using laboratory test results. 86 attributes (laboratory tests) were selected from datasets based on value counts, clinical importance-related features, and missing values. We collected sample datasets on 5145 cases, including 326,686 laboratory test results. We investigated a total of 39 specific diseases based on the International Classification of Diseases, 10th revision (ICD-10) codes. These datasets were used to construct light gradient boosting machine (LightGBM) and extreme gradient boosting (XGBoost) ML models and a DNN model using TensorFlow. The optimized ensemble model achieved an F1-score of 81% and prediction accuracy of 92% for the five most common diseases. The deep learning and ML models showed differences in predictive power and disease classification patterns. We used a confusion matrix and analyzed feature importance using the SHAP value method. Our new ML model achieved high efficiency of disease prediction through classification of diseases. This study will be useful in the prediction and diagnosis of diseases.
Journal Article
InstaFormer++: Multi-Domain Instance-Aware Image-to-Image Translation with Transformer
2024
We present a novel Transformer-based network architecture for instance-aware image-to-image translation, dubbed InstaFormer, to effectively integrate global- and instance-level information. By considering extracted content features from an image as visual tokens, our model discovers global consensus of content features by considering context information through self-attention module of Transformers. By augmenting such tokens with an instance-level feature extracted from the content feature with respect to bounding box information, our framework is capable of learning an interaction between object instances and the global image, thus boosting the instance-awareness. We replace layer normalization (LayerNorm) in standard Transformers with adaptive instance normalization (AdaIN) to enable a multi-modal translation with style codes. In addition, to improve the instance-awareness and translation quality at object regions, we present an instance-level content contrastive loss defined between input and translated image. Although competitive performance can be attained by InstaFormer, it may face some limitations, i.e., limited scalability in handling multiple domains, and reliance on domain annotations. To overcome this, we propose InstaFormer++ as an extension of Instaformer, which enables multi-domain translation in instance-aware image translation for the first time. We propose to obtain pseudo domain label by leveraging a list of candidate domain labels in a text format and pretrained vision-language model. We conduct experiments to demonstrate the effectiveness of our methods over the latest methods and provide extensive ablation studies.
Journal Article