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32 result(s) for "Peer, Nasreen"
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Caught in transition: changes in brachyuran diversity following mangrove encroachment into saltmarshes at a southern distribution limit
Mangroves are expanding polewards due to global change, often encroaching into adjacent temperate saltmarshes. In both vegetated ecosystems, brachyurans are responsible for ecological processes and functions such as nutrient cycling and sediment bioturbation. South African mangroves occur at a latitudinal limit and are establishing further south due to past planting events and global change, making these ideal study systems for the effects of mangrove expansion and encroachment. Here, we investigated the effect of mangrove encroachment on brachyuran community composition at two saltmarsh sites with planted mangrove stands of different ages. Transects were laid perpendicular to each estuary where three habitat types were demarcated (mangrove, ecotone, saltmarsh). Sediment samples were collected for analyses and quadrats were used to measure pneumatophore density, saltmarsh cover, and brachyuran abundance and diversity. We found that brachyuran community structure at each site has significantly changed over seven years, with two mangrove-associated fiddler crab species, Tubuca urvillei and Paraleptuca chlorophthalmus , now recorded at the younger planted site, indicating a new southern distributional limit. Community structure was also significantly different amongst habitat types (p < 0.05) with Parasesarma catenatum dominating saltmarshes while Danielella edwardsii was more prominent in mangroves. However, community composition did not differ significantly between the two (differently aged) sites (p > 0.05). Pneumatophore density had a proportional relationship with crab abundance, diversity and richness, while saltmarsh cover had an inversely proportional relationship with crab abundance, diversity and richness. It is likely that as mangroves continue to expand into saltmarshes, more mangrove-associated species will move into saltmarshes, potentially altering ecosystem processes in this unique habitat.
Let's get high: Cladogenesis in freshwater crabs (Decapoda: Potamonautidae: Potamonautes) supports the mountain gradient speciation hypothesis in the Cape Fold and Drakensberg Mountains, South Africa
During the present study, the evolutionary relationship within a clade of mountain clade of freshwater crabs (Potamonautes) was examined using mtDNA sequence data for species from the Cape Fold Mountain (CFM) and Great Escarpment (Drakensberg Mountain range). We undertook phylogenetic analyses, divergence time estimation, and an ancestral area reconstruction to explore the period of cladogenesis and understand the biogeographic history in this high‐altitude clade. Furthermore, we applied four species delimitation methods using ASAP, bPTP, bGMYC, and STACEY on the latter clade. Bayesian phylogenetic analyses retrieved a monophyletic freshwater crab clade comprised of two major sister clades, one comprised of the Cape Fold (clade A) and two comprised of Drakensberg Mountains (clade B) species. Divergence time estimation indicated that the two clades underwent Mio/Pliocene cladogenesis. Within the CFM clade (A), P. amathole (Amathola Mountains) was sister to P. parvispina (Cederberg and Kouebokkeveld Mountains) and the latter species were sister to P. parvicorpus (Cape Peninsula, Jonkershoek, and Helderberg Mountains) sister to P. tuerkayi (Overberg Mountains) and P. brincki (Hottentots Holland Mountains). Within the Drakensberg Mountain clade (B), we observed in situ diversification. Specimens from the southcentral Drakensberg Mountains (Dargle Forest, Injasuti, Karkloof, and Impendle) represent a new undescribed lineage Potamonautes sp. nov. 1. The second clade from the northern Drakensberg, representing P. clarus, was sister to a central Drakensberg Mountain clade that comprised P. depressus that was in turn sister to P. baziya from the Eastern Cape Province. The application of species delimitation methods generally overestimated the number of species. The biogeographic analyses indicated that the Eastern Cape Province is the most likely ancestral range area. Ecological niche modelling of representative species in clades A (Cape Fold Mountains) and B (Drakensberg Mountains) demonstrated that temperature and rainfall were the major abiotic drivers that differentiated the two clades. Our data favours the mountain gradient speciation hypothesis. BioGeoBears analyses of the biogeographic analyses in a endemic clade of freshwater crabs in South Africa. The figure includes the tree topology and a picture of the Cape Fold Mountains and the Drakensberg Mountains.
Description of a new montane freshwater crab (Arthropoda, Malacostraca, Decapoda, Potamonautidae) from the Eastern Cape, South Africa
A new species of freshwater crab, Potamonautes amathole sp. nov. , is described from the Winterberg-Amathole mountain range in the Eastern Cape Province, South Africa. Morphologically, P. amathole Peer & Gouws, sp. nov. most closely resembles P. tuerkayi but can be distinguished by key morphological characters including the variation in the shape of the subterminal segment of gonopod 2 between both species. Genetically, P. amathole Peer & Gouws, sp. nov. is placed within the clade of small-bodied, mountain-dwelling crabs including P. parvispina , P. parvicorpus , P. brincki , P. tuerkayi , P. baziya , and P. depressus . The new species is found in slow-moving mountain streams and pools at high altitudes. The continued discovery and description of new freshwater crab species reinforces the need for ongoing research, especially in under-sampled regions.
Community and Marine Conservation in South Africa: Are We Still Missing the Mark?
Marine Protected Areas (MPAs) in South Africa have a long history with currently 5% of the mainland’s ocean territory protected. The MPAs are celebrated and appreciated for their representative coverage of several habitat types and their ecological benefits. However, the story of correlational coastal community exclusion is not one that is often told in the ‘success’ story of South African MPAs. In this review we describe the history of marine conservation in South Africa and examine how the legislation and motivation has evolved since Apartheid. While legislation provides direction in terms of community inclusion, this is rarely the reality as we explore with five case studies. We go on to discuss how top-down governance continues to exclude communities and suggest key lessons drawn from our case-studies that could lead to a more community-involved approach to the ongoing protection and management of our marine habitats for greater conservation success.
Prospects and challenges of environmental DNA (eDNA) metabarcoding in mangrove restoration in Southeast Asia
Species detection using environmental DNA (eDNA) is a biomonitoring tool that can be widely applied to mangrove restoration and management. Compared to traditional surveys that are taxa-specific and time-consuming, eDNA metabarcoding offers a rapid, non-invasive and cost-efficient method for monitoring mangrove biodiversity and characterising the spatio-temporal distribution of multiple taxa simultaneously. General guidelines for eDNA metabarcoding are well-established for aquatic systems, but habitat-specific guidelines are still lacking. Mangrove habitats, as priority ecosystems for restoration in Southeast Asia, present unique prospects and challenges in these regards. Environmental DNA metabarcoding can be used to (1) track functional recovery in ecological restoration, (2) prioritise conservation areas, (3) provide early warning for threats, (4) monitor threatened taxa, (5) monitor response to climate change, and (6) support community-based restoration. However, these potential applications have yet been realized in Southeast Asia due to (1) technical challenges, (2) lack of standardised methods, (3) spatio-temporal difficulties in defining community, (4) data limitations, and (5) lack of funding, infrastructure and technical capacity. Successful implementation of eDNA metabarcoding in mangrove restoration activities would encourage the development of data-driven coastal management and equitable conservation programs. Eventually, this would promote Southeast Asia’s shared regional interests in food security, coastal defence and biodiversity conservation.
ANEMONE Global's First eDNA ‐Based Assessment: Insights Toward a Standardized Global Monitoring Network
Environmental DNA (eDNA) enables sensitive detection of species from environmental samples, particularly water. Large‐scale, standardized monitoring of coastal fish communities remains challenging across diverse regions. The ANEMONE Global network was established to address this gap, expanding the workflow developed in Japan to a coordinated worldwide survey using standardized eDNA metabarcoding. Between June and November 2024, 12 countries, including several in Southeast Asia, collected surface water samples from beaches, rocky shores, estuaries, and near coastal protective structures using harmonized protocols for filtration, RNAlater preservation, and metadata recording. Daytime and nighttime sampling captured temporal variation in community composition. All samples were processed with the MiFish metabarcoding protocol, quantitative internal standards, and rigorous contamination controls. Analysis of 90 samples generated over 16.6 million high‐quality reads, revealing more than 500 putative fish OTUs across diverse families, genera, and species. Species richness varied geographically, reflecting differences in fish fauna, and assemblages differed across the Atlantic, Indian, North Pacific, and South Pacific Oceans. Diel variation was most pronounced in the North Pacific, and diversity patterns reflected both habitat complexity and ocean basin, with waters adjacent to coastal protective structures and rocky shores supporting the highest diversity. These findings highlight how both habitat complexity and ocean basin geography shape coastal fish assemblages, offering insights for global marine biodiversity monitoring using eDNA. This survey demonstrates that a globally standardized eDNA workflow can generate comparable quality data across ecological and logistical contexts. By combining international collaboration, open data, and locally informed implementation, ANEMONE Global provides a framework for long‐term, high‐resolution monitoring of coastal biodiversity and sets the stage for expanding coverage to additional aquatic ecosystems worldwide.
Tufa stromatolite ecosystems on the South African south coast
Following the first description of living marine stromatolites along the South African east coast, new investigations along the south coast have revealed the occurrence of extensive fields of actively calcifying stromatolites. These stromatolites have been recorded at regular distances along a 200-km stretch of coastline, from Cape Recife in the east to the Storms River mouth in the west, with the highest density found between Schoenmakerskop and the Maitland River mouth. All active stromatolites are associated with freshwater seepage streams flowing from the dune cordon, which form rimstone dams and other accretions capable of retaining water in the supratidal platform. Resulting pools can reach a maximum depth of about 1 m and constitute a unique ecosystem in which freshwater and marine organisms alternate their dominance in response to vertical mixing and the balance between freshwater versus marine inflow. Although, the factors controlling stromatolite growth are yet to be determined, nitrogen appears to be supplied mainly via the dune seeps.
MtDNA lineage diversity of a potamonautid freshwater crab in KwaZulu-Natal, South Africa
Five species of freshwater crab (genus Potamonautes) are known from KwaZulu-Natal, South Africa, whilst a sixth (Potamonautes isimangaliso) was recently described from the iSimangaliso Wetland Park. Earlier molecular studies of crab diversity in the province were largely limited in geographic scope or employed genetic markers, ill-suited for identifying intraspecific diversity. Possible species-level diversity or cryptic taxa may have thus remained undetected. In this study, lineage diversity was examined in a widespread species, Potamonautes sidneyi, using mitochondrial sequence data, to determine whether this species harbours cryptic diversity that could be of conservation importance in the province, particularly with respect to the iSimangaliso Wetland Park. The taxonomic status of P. isimangaliso was also assessed. Mitochondrial sequence data were generated and analysed to identify unique lineages and to examine their distributions. Phylogenetic analyses were used to determine whether these lineages represented known or potentially novel species, using comparative data from southern African Potamonautes species. Seven independent networks were identified within P. sidneyi and substantial structure was observed amongst sampling localities. Phylogenetic analyses revealed two distinct, divergent lineages in P. sidneyi. One was positively assigned to P. sidneyi, whereas the placement of the other suggested a novel species. These results suggested possible species diversity within P. sidneyi, with one lineage occurring in the north-east of the province, around the iSimangaliso Wetland Park. Potamonautes isimangaliso was clearly allied to Potamonautes lividus, but genetic divergences suggested that P. isimangaliso is a distinct taxon and that P. lividus may represent a species complex.Conservation implications: This study confirmed unique freshwater crab diversity, both within KwaZulu-Natal and associated with the iSimangaliso Wetland Park.
Biodiversity census of Lake St Lucia, iSimangaliso Wetland Park (South Africa): Gastropod molluscs
The recent dry phase experienced by the St Lucia estuarine system has led to unprecedented desiccation and hypersaline conditions through most of its surface area. This has changed only recently, at the end of 2011, with the onset of a new wet phase that has already caused a major shift to oligo- and mesohaline conditions. The estuary mouth, however, remains closed to the ocean, making the weak connection recently established between the St Lucia and the Mfolozi estuaries the only conveyance for marine recruitment. As a result, only 10 indigenous and two alien aquatic gastropod species are currently found living in the St Lucia estuarine lake. This is out of a total of 37 species recorded within the system since the earliest survey undertaken in 1924, half of which have not been reported in the literature before. The tick shell, Nassarius kraussianus, which was consistently found in large abundance prior to the recent dry phase, appears to have temporarily disappeared from the system, probably as a result of the extinction of Zostera marine grasses inside the lake. Population explosions of the bubble shell Haminoea natalensis, with its distinct egg masses, were recorded seasonally until 2009, but the species has subsequently not been observed again. A molecular DNA analysis of the various populations previously reported as belonging to the same assimineid species, variably referred to as Assiminea capensis, A. ovata, or A. bifasciata, has revealed that the St Lucia assemblage actually comprises two very distinct taxa, A. cf. capensis and a species provisionally referred to here as \"A.\" aff. capensis or simply Assimineidae sp. In the mangroves, the climbing whelk Cerithidea decollata is still found in numbers, while ellobiids such as Cassidula labrella, Melampus semiaratus and M. parvulus are present in low abundances and all previously recorded littorinids have disappeared. A number of alien freshwater species have colonized areas of the system that have remained under low salinity. These include the invasive thiarid Tarebia granifera, which can be found in concentrations exceeding 5000 ind.m(-2), the lymnaeid Pseudosuccinea columella and the physid Aplexa marmorata.
Redescription of Potamonautes sidneyi (Rathbun, 1904) (Decapoda: Potamonautidae) and description of a new congeneric species from KwaZulu–Natal, South Africa
A new species of freshwater crab, , is described from the southern region of the KwaZulu-Natal Province, South Africa. most closely resembles which is re-described here, but can be distinguished by a suite of key morphological characters including carapace shape and width, slim pereopods, inflated propodi of the chelipeds, and the shape and terminal segment length:subterminal segment length ratio of the 1 gonopod. In a previous study (Gouws et al. 2015), a 9.2-11.8 % divergence was found in the mitochondrial COI and 16S genes of the clade, allowing for the delineation of a new species. Despite the clear molecular distinction between the two species, it is difficult to separate them based on individual morphological characters, as there is a great deal of overlap even among key features. The new species is found in slow-moving mountain streams and pools at high altitudes between Umhlanga and Mtamvuna, in KwaZulu-Natal.