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result(s) for
"Peng, Yangyang"
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Continuous Wavelet Transform-Based Method for High-Sensitivity Detection of Image Signals of Fluorescence Lateral Flow Assay
2025
Fluorescence lateral flow assays (FLFA) based on quantum dot probes have attracted significant attention in recent years due to their high sensitivity and quantitative detection capabilities. FLFA requires the use of a straightforward fluorescence reader for quantitative detection. Most fluorescence readers employ narrowband filters for auxiliary imaging, which facilitates the acquisition of high-contrast signals. However, during trace detection, the weak signal from FLFA can be easily lost due to optical flux loss associated with narrowband filters, thereby indirectly diminishing detection sensitivity. To address this issue, we developed a fluorescence signal reader that employs CMOS imaging without optical filters and proposed a highly sensitive signal detection algorithm based on continuous wavelet transform (CWT) to identify weak fluorescence signals with low contrast. Experimental results demonstrate that the method achieves a fluorescence detection sensitivity for quantum dots of 10−10 mol/L, with a relative standard deviation (RSD) of < 1.45%. The designed filter-free detection system and CWT analysis algorithm were applied to various FLFA systems (including the sandwich method and the competition method), with the correlation coefficient (R2) between all detection results and sample concentration exceeding 0.997. The findings of this study offer a highly sensitive signal detection method for the precise quantification of FLFA.
Journal Article
Nowhere to escape: the cross‐age avian haemosporidian exposure of migrants in northeast China
by
Peng, Yangyang
,
Huang, Xi
,
Dong, Lu
in
age-specificity
,
Animal migration
,
Avian haemosporidian
2023
Pathogen infection has been progressively recognized as a potential driver of animal migration, and the infection pattern in a certain host may be related to its migration status. Nestling viability can be a crucial life stage in the evolution of the migration cycle but have been irregularly studied to date. In this study, we tested the ‘migratory exposure' hypothesis by comparing the prevalence and diversity of avian haemosporidian parasites in the breeding area between two dominant species including adults and nestlings: yellow‐rumped flycatcher Ficedula zanthopygia, which is a summer migratory species, and Japanese tit Parus minor, which is a local resident species. The yellow‐rumped flycatcher harboured more diverse parasite lineages than the Japanese tit, which is in line with the expectation of the ‘migratory exposure' hypothesis, while nestlings present a similar but more applicable pattern. Among the 40 unique identified parasite lineages, only one was shared between host species and three between age classes. Nestlings suffered a high parasite diversity with plenty of age‐specific lineages in the breeding area, mainly Leucocytozoon, which may suggest an extraordinary selection pressure in early life‐stages during migration. However, the most common lineages in adults were not detected in nestlings, and the prevalence of infection is significantly lower in nestlings than in adults. Our results suggest that migratory birds may have suffered from more frequent parasite infections during migration, but escaped from more virulent lineages at the same time. The difference in susceptibility and parasite assembly between adults and nestlings in migrants may result from an intricate interaction along the evolution of life history. Our investigations have revealed the significance of avian haemosporidian parasite infection patterns in nestlings in breeding areas, and provide a novel insight into the driving forces of migration.
Journal Article
Mismatch risk allocation in a coproduct supply chain
2020
Products such as cattles and pigs can be processed into several types of products (parts) targeting different segments of customers, which belong to the so called coproducts. Mismatch risk is a significant issue in such coproduct supply chains. Under the Stackelberg game setting, we consider a coproduct supply chain consisting of one producer acting as the leader and one retailer being the follower and establish a stylized model to study how the mismatch risk should be allocated. Two supply chain modes are considered, i.e., the P-chain mode under which the producer is responsible for the processing activity and hence holds the mismatch risk, and the R-chain under which the retailer is responsible for the processing activity. We use the unbalanced ratio to reflect the degree of mismatch between supply and demand among different parts of the coproduct and study how the tradeoff between the bargaining power and the mismatch cost, by different mismatch risk allocations, influences the optimal decisions and the performances of the two parties as well as the whole supply chain. Our main findings include: (1) P-chain dominates R-chain from the perspective of the chain performance; and (2) the upstream producer is not always better off in the P-chain under which he bears more mismatch risk. Numerical study shows the robustness of our main results and further studies the effect of demand uncertainty and the processing cost on the performance of P-chain as compared to R-chain.
Journal Article
Integrated Transcriptomic and Metabolomic Profiling Reveals Monotonic Molecular Signatures During Fruiting Body Development of Coprinus comatus
2025
Integrative transcriptomic-metabolomic profiling across three developmental stages of
revealed that a coherent, monotonic molecular program drives fruiting body maturation. Stage-resolved RNA-seq and untargeted metabolomics were carried out to cleanly separate samples, and results showed directional trends: glycerophospholipids and other lipid species declined steadily, whereas peptides and amino-acid derivatives accumulated. Early development was driven by cell cycle regulation and DNA damage repair, while later stages shifted toward amino acid, glutathione and cell wall metabolism. These coupled transcriptional and metabolic shifts delineate processes associated with maturation and autolysis from which actionable markers can be identified to refine cultivation practices and optimize harvesting time.
Journal Article
Extra-Cavity Modulation of a Quartic Soliton with Negative Fourth-Order Dispersion
by
Peng, Yangyang
,
Zhou, Yan
,
Wang, Haoming
in
Electric fields
,
extra-cavity modulation
,
Fiber lasers
2025
Quartic solitons in ultrafast fibre lasers (intra-cavity optical fibre modulation systems) have been theoretically and experimentally analysed in recent years. However, there are few reports about extra-cavity modulating quartic solitons. In this situation, the purpose of this work is to investigate a quartic soliton’s extra-cavity modulation. In this paper, we theoretically simulate an extra-cavity-modulating quartic soliton with negative fourth-order dispersion at 1550 nm. The simulation relies on a physical model of a single-mode optical fibre system. Through controlling soliton parameters in an extra-cavity modulation system, a quartic soliton’s orthogonal polarisation modes will show unique characteristics depending on which kind of parameter is changed (seven parameters are considered for variation). For example, through the variation in the projection angle, only a horizontally polarised quartic soliton pulse is generated. These results explore the dynamics of quartic solitons in single-mode optical fibre modulation systems and are applicable to optical soliton transmission techniques in the field of optical fibre communication.
Journal Article
The Role of Host‐Range Expansion and Co‐Speciation in Host–Parasite Associations With the Divergence of the Great Tit Species Complex
2025
During the evolution of parasites, co‐speciation and host‐range expansion are thought to play roles in establishing associations with hosts, while sorting events can lead to dissolution of those associations. To address the roles of these processes, we focus on avian haemosporidian parasites infecting hosts of the intensively studied great tit species complex. We estimated the phylogeography of lineages detected in the species complex, and quantified their transition probabilities among hosts. Lineages detected in different host species presented a strong geographical signal but did not form monophyletic groups. Yet, distributions of lineages are not merely the result of their dispersal limitations, as many lineages that infect only one focal species can be found in birds sympatric with other focal species. Besides, closely related lineages that infect the same host species reach more similar rates of infection than expected by chance. Finally, Haemoproteus and Leucocytozoon lineages infecting P. major, the most recently dispersed species, were more generalized than others, consistent with a pattern of generalist parasites expanding their host ranges by infecting newly encountered host species. Our results suggest that host–parasite associations in this system are mainly the result of sorting events and host‐range expansion of parasites, rather than co‐speciation. In this work, we investigated the global phylogeographic pattern of host–parasite associations in a well‐studied common bird species complex, and the role of different ecological processes in establishing the patterns. We found that the parasite distributions are not merely the result of geographical restriction, but mainly shaped by sorting events and host range expansion during the host dispersal. It appears that co‐speciation, which is frequently overestimated, is less important in the establishment of host–parasite associations.
Journal Article
A new protocol for absolute quantification of haemosporidian parasites in raptors and comparison with current assays
2020
Background
Accurate quantification of infection intensity is essential to estimate infection patterns of avian haemosporidian parasites in order to understand the evolution of host-parasite associations. Traditional microscopy is cost-effective but requires high-quality blood smears and considerable experience, while the widely used semi-quantitative qPCR methods are mostly employed with ideal, laboratory-based golden samples and standard curves, which may limit the comparison of parasitemia from different laboratories.
Methods
Here we present a digital droplet PCR (ddPCR) protocol for absolute quantification of avian haemosporidians in raptors. Novel primers were designed that target a conserved fragment of a rRNA region of the mitochondrial genome of the parasites. Sensitivity and repeatability were evaluated compared to qPCR and other assays.
Results
This ddPCR assay enables accurate quantification of haemosporidian parasites belonging to
Plasmodium
,
Haemoproteus
and
Leucocytozoon
with minimum infection quantities of 10
−5
(i.e. one parasite copy in 10
5
host genomes) without the use of standard curves. Quantities assessed by ddPCR were more accurate than qPCR using the same primers through reduction of non-specific amplification in low-intensity samples. The ddPCR technique was more consistent among technical duplicates and reactions, especially when infection intensities were low, and this technique demonstrated equal sensitivity with high correspondence (
R
2
= 0.97) compared to the widely used qPCR assay. Both ddPCR and qPCR identified more positive samples than the standard nested PCR protocol for the
cytb
gene used for barcoding avian haemosporidians.
Conclusions
We developed a novel ddPCR assay enabling accurate quantification of avian haemosporidians without golden samples or standard curves. This assay can be used as a robust method for investigating infection patterns in different host-parasite assemblages and can facilitate the comparison of results from different laboratories.
Journal Article
Quality Grading of Oudemansiella raphanipes Using Three-Teacher Knowledge Distillation with Cascaded Structure for LightWeight Neural Networks
2025
Oudemansiella raphanipes is valued for its rich nutritional content and medicinal properties, but traditional manual grading methods are time-consuming and labor-intensive. To address this, deep learning techniques are employed to automate the grading process, and knowledge distillation (KD) is used to enhance the accuracy of a small-parameter model while maintaining a low resource occupation and fast response speed in resource-limited devices. This study employs a three-teacher KD framework and investigates three cascaded structures: the parallel model, the standard series model, and the series model with residual connections (residual-series model). The student model used is a lightweight ShuffleNet V2 0.5x, while the teacher models are VGG16, ResNet50, and Xception. Our experiments show that the cascaded structures result in improved performance indices, compared with the traditional ensemble model with equal weights; in particular, the residual-series model outperforms the other models, achieving a grading accuracy of 99.7% on the testing dataset with an average inference time of 5.51 ms. The findings of this study have the potential for broader application of KD in resource-limited environments for automated quality grading.
Journal Article
Ocular Surface Microbiota Alterations Following FS‐LASIK and Their Association With Postoperative Dry Eye
2026
Given the limited evidence on ocular surface microbiota (OSM) changes after femtosecond laser-assisted in situ keratomileusis (FS-LASIK) and their link to dry eye (DE), this study aimed to compare microbial profiles in patients with and without postoperative DE, offering a basis for early detection and targeted treatment.
Patients undergoing FS-LASIK were evaluated 3 months postoperatively and stratified into DE (
= 30) and non-DE groups (
= 30) based on ocular surface disease index (OSDI), TBUT, and the Schirmer I test. Corneal nerve alterations were assessed using IVCM. Conjunctival sac samples were collected pre- and postoperatively, and microbiota profiles were analyzed via 16S rRNA sequencing.
Comparative analysis of the OSM revealed significantly higher α-diversity in the DE group compared to the NDE group. At the phylum level, a decrease in Proteobacteria and an increase in Bacteroidetes were observed. At the genus level,
,
, and
were enriched, whereas
and
were depleted. The abundance of
was positively correlated with OSDI scores and negatively correlated with corneal nerve fiber length (CNFL), corneal nerve branch density (CNBD), corneal nerve fiber area (CNFA), and corneal nerve fractal dimension (CFracDim) (all
< 0.05). In contrast,
was positively associated with the Schirmer I test values and corneal nerve fiber density (CNFD) (
< 0.05). At baseline, patients in the DE group exhibited lower abundances of Cyanobacteria and
but higher levels of Verrucomicrobia and
. Postoperative within-group comparisons further showed that, relative to baseline, the DE group had increased abundances of
,
,
, and
, along with decreased levels of
,
, and
.
In summary, dysbiosis between the
and
genera may represent both a biomarker of DE susceptibility and a therapeutic target. Additionally, the preoperative microbial composition may influence postoperative dynamics and DE risk.
ClinicalTrials.gov identifier: NCT06448468.
Journal Article
Fabrication of Non-Wetting Mg(OH)2 Composites with Photoresponsive Capabilities and Their Environmental Restoration Performance
2024
Water pollution seriously affects the development of society and human life. There are various kinds of pollutants, including soluble pollutants and insoluble floaters on the water surface. Herein, the photocatalyst semiconductor BiOCl and superhydrophobic functional particles Mg(OH)2 were deposited on the surfaces of canvas and polyester felt to construct superhydrophobic canvas and polyester felt. The contact angles of the synthetic superhydrophobic canvas and polyester felt were measured as 152° and 155.3°, respectively. The selective adsorption of hexadecane was achieved using the wetting difference between the surface of water and pollutants floating on the surface. For dissolved pollutants, the surface wettability needed to be changed with the help of ethanol. The degradation efficiencies were all greater than 90%, demonstrating the versatility of the synthetic superhydrophobic canvas and polyester felt.
Journal Article