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Graphene nanoribbons (GNRs) are promising quasi-one-dimensional materials with various technological applications. Recently, methods that allowed for the control of GNR’s topology have been developed, resulting in connected nanoribbons composed of two distinct armchair GNR families. Here, we employed an extended version of the Su-Schrieffer-Heeger model to study the morphological and electronic properties of these novel GNRs. Results demonstrated that charge injection leads to the formation of polarons that localize strictly in the 9-AGNRs segments of the system. Its mobility is highly impaired by the system’s topology. The polaron displaces through hopping between 9-AGNR portions of the system, suggesting this mechanism for charge transport in this material.

Graphene nanoribbons (GNRs) are two-dimensional structures with a rich variety of electronic properties that derive from their semiconducting band gaps. In these materials, charge transport can occur via a hopping process mediated by carriers formed by self-interacting states between the excess charge and local lattice deformations. Here, we use a two-dimensional tight-binding approach to reveal the formation of bipolarons in GNRs. Our results show that the formed bipolarons are dynamically stable even for high electric field strengths when it comes to GNRs. Remarkably, the bipolaron dynamics can occur in acoustic and optical regimes concerning its saturation velocity. The phase transition between these two regimes takes place for a critical field strength in which the bipolaron moves roughly with the speed of sound in the material.

In organic molecular crystals, the polaronic hopping model for the charge transport assumes that the carrier lies at one or a small number of molecules. Such a kind of localization suffers the influence of the non-local electron–phonon (e–ph) interactions associated with intermolecular lattice vibrations. Here, we developed a model Hamiltonian for numerically describing the role played by the intermolecular e–ph interactions on the stationary and dynamical properties of polarons in a two-dimensional array of molecules. We allow three types of electron hopping mechanisms and, consequently, for the nonlocal e–ph interactions: horizontal, vertical, and diagonal. Remarkably, our findings show that the stable polarons are not formed for isotropic arrangements of the intermolecular transfer integrals, regardless of the strengths of the e–ph interactions. Interestingly, the diagonal channel for the e–ph interactions changes the transport mechanism by sharing the polaronic charge between parallel molecular lines in a breather-like mode.

Carbon-based materials have garnered significant attention since the groundbreaking synthesis of graphene. The exploration of novel 2D carbon allotropes has led to the discovery of materials with intrinsic properties distinct from graphene. Within this context, the biphenylene network (BPN) was successfully synthesized. In this study, we used molecular dynamics (MD) simulations with the Reactive Force Field (ReaxFF) to delve into the thermomechanical properties and fracture patterns of biphenylene-based nanotubes (BPN-NTs) exhibiting armchair (AC-BPN-NT) and zigzag (ZZ-BPN-NT) chiralities. Throughout the longitudinal deformation process, we observed significant morphological transformations preceding the structural fracture of the system. These transformations unfolded in distinct inelastic phases. In both cases, AC- and ZZ-BPN-NT, stress accumulation in four-membered rings led to the creation of octagonal structures; however, in AC, this occurs in the fracture region, subsequently causing the presence of nanopores. On the other hand, for ZZ-BPN-NT, stress accumulation in the rectangular rings occurred in bonds parallel to the deformation, with elongated octagonal structures. The Young’s modulus of these nanotubes ranged from 746 to 1259 GPa, with a melting point of around 4000 K. Our results also explore the influence of diameter and curvature, drawing comparisons with BPN monolayers.

Exploring therapeutic options is crucial in the ongoing COVID-19 pandemic caused by SARS-CoV-2. Nirmatrelvir, which is a potent inhibitor that targets the SARS-CoV-2 Mpro, shows promise as an antiviral treatment. Additionally, Ivermectin, which is a broad-spectrum antiparasitic drug, has demonstrated effectiveness against the virus in laboratory settings. However, its clinical implications are still debated. Using computational methods, such as molecular docking and 100 ns molecular dynamics simulations, we investigated how Nirmatrelvir and Ivermectin interacted with SARS-CoV-2 Mpro(A). Calculations using density functional theory were instrumental in elucidating the behavior of isolated molecules, primarily by analyzing the frontier molecular orbitals. Our analysis revealed distinct binding patterns: Nirmatrelvir formed strong interactions with amino acids, like MET49, MET165, HIS41, HIS163, HIS164, PHE140, CYS145, GLU166, and ASN142, showing stable binding, with a root-mean-square deviation (RMSD) of around 2.0 Å. On the other hand, Ivermectin interacted with THR237, THR239, LEU271, LEU272, and LEU287, displaying an RMSD of 1.87 Å, indicating enduring interactions. Both ligands stabilized Mpro(A), with Ivermectin showing stability and persistent interactions despite forming fewer hydrogen bonds. These findings offer detailed insights into how Nirmatrelvir and Ivermectin bind to the SARS-CoV-2 main protease, providing valuable information for potential therapeutic strategies against COVID-19.

The dynamical properties of polarons in organic molecular crystals are numerically studied in the framework of an one-dimensional Holstein-Peierls approach that includes lattice relaxation. Particularly, the present study is aimed at designing a tight-binding Hamiltonian that can address the charge transport mechanism in model oligoacene stacks. Our findings show that the definition of a particular oligoacene system depends strictly on the employed set of parameters. The usefulness of this methodology is highlighted by analyzing the polaron’s saturation velocity and, consequently, its stability in the presence of a damping term and substantially high electric field strengths. Importantly, these results may be useful for the designing of novel materials to be employed in the field of molecular electronics.

A novel 2D carbon allotrope, pentagraphyne (PG-yne), was introduced in a recent theoretical study. This unique structure is derived from pentagraphene by incorporating acetylenic linkages between sp3 and sp2 hybridized carbon atoms. Given its intriguing electronic and structural properties, it is imperative to investigate the mechanical characteristics and thermal responses of PG-yne in both monolayer and nanotube configurations, which encompass different chiralities and diameters. We conducted fully atomistic reactive molecular dynamics (MD) simulations employing the ReaxFF potential to address these aspects. Our findings reveal that Young’s modulus of PG-yne monolayers stands at approximately 51 GPa at room temperature. In contrast, for the studied nanotubes, regardless of their chirality, it hovers around 45 GPa. Furthermore, our observations indicate that PG-yne-based systems feature an extensive and relatively flat plastic region before reaching the point of total fracture, irrespective of their topology. Regarding their thermal properties, we identified a melting point at approximately 3600 K, accompanied by a phase transition around 1100 K.

The polaron stability in organic molecular crystals is theoretically investigated in the scope of a two-dimensional Holstein–Peierls model that includes lattice relaxation. Particularly, the investigation is focused on designing a model Hamiltonian that can address properly the polaron properties in different model oligoacene crystals. The findings showed that a suitable choice for a set of parameters can play the role of distinguishing the model crystals and, consequently, different properties related to the polaron stability in these systems are observed. Importantly, the usefulness of this model is stressed by investigating the electronic localization of the polaron, which provides a deeper understanding into the properties associated with the polaron stability in oligoacene crystals.

Graphene nanoribbons are 2D hexagonal lattices with semiconducting band gaps. Below a critical electric field strength, the charge transport in these materials is governed by the quasiparticle mechanism. The quasiparticles involved in the process, known as polarons and bipolarons, are self-interacting states between the system charges and local lattice distortions. To deeply understand the charge transport mechanism in graphene nanoribbons, the study of the stability conditions for quasiparticles in these materials is crucial and may guide new investigations to improve the efficiency for a next generation of graphene-based optoelectronic devices. Here, we use a two-dimensional version of the Su–Schrieffer–Heeger model to investigate the stability of bipolarons in armchair graphene nanoribbons (AGNRs). Our findings show how bipolaron stability is dependent on the strength of the electron–phonon interactions. Moreover, the results show that bipolarons are dynamically stable in AGNRs for electric field strengths lower than 3.0 mV/Å. Remarkably, the system’s binding energy for a lattice containing a bipolaron is smaller than the formation energy of two isolated polarons, which suggests that bipolarons can be natural quasiparticle solutions in AGNRs. Graphical Abstract Charge localization of bipolarons in armchair garphene nanoribbons

We carried out fully-atomistic reactive molecular dynamics simulations to study the elastic properties and fracture patterns of transition metal dichalcogenide (TMD) MoX2 (X = S, Se, Te) membranes, in their 2H and 1T phases, within the framework of the Stillinger–Weber potential. Results showed that the fracture mechanism of these membranes occurs through a fast crack propagation followed by their abrupt rupture into moieties. As a general trend, the translated arrangement of the chalcogen atoms in the 1T phase contributes to diminishing their structural stability when contrasted with the 2H one. Among the TMDs studied here, 2H-MoSe2 has a higher tensile strength (25.98 GPa).