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result(s) for
"Peter, Katja"
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Automated Clinical Grade Expansion of Regulatory T Cells in a Fully Closed System
by
Keßler, Jörg
,
Peter, Katja
,
Bonifacio, Ezio
in
Adoptive transfer
,
advanced therapy medicinal product
,
Anticoagulants
2019
Adoptive transfer of T regulatory cells (Treg) has been successfully exploited in the context of graft-versus-host disease, transplantation, and autoimmune disease. For the majority of applications, clinical administration of Treg requires laborious
expansion and typically involves open handling for culture feeds and repetitive sampling. Here we show results from our approach to translate manual Treg manufacturing to the fully closed automated CliniMACS Prodigy® system reducing contamination risk, hands-on time, and quality variation from human intervention. Polyclonal Treg were isolated from total nucleated cells obtained through leukapheresis of healthy donors by CD8
cell depletion and subsequent CD25
enrichment. Treg were expanded with the CliniMACS Prodigy® device using clinical-grade cell culture medium, rapamycin, IL-2, and αCD3/αCD28 beads for 13-14 days. We successfully integrated expansion bead removal and final formulation into the automated procedure, finalizing the process with a ready to use product for bedside transfusion. Automated Treg expansion was conducted in parallel to an established manual manufacturing process using G-Rex cell culture flasks. We could prove similar expansion kinetics leading to a cell yield of up to 2.12 × 10
cells with the CliniMACS Prodigy® and comparable product phenotype of >90% CD4
CD25
CD127
FOXP3
cells that had similar
immunosuppressive function. Efficiency of expansion bead depletion was comparable to the CliniMACS® Plus system and the final ready-to-infuse product had phenotype stability and high vitality after overnight storage. We anticipate this newly developed closed system expansion approach to be a starting point for the development of enhanced throughput clinical scale Treg manufacture, and for safe automated generation of antigen-specific Treg grafted with a chimeric antigen receptor (CAR Treg).
Journal Article
Automated GMP-compatible production of universal CAR Tregs for organ-targeted tolerance induction
by
Arndt, Claudia
,
Bonifacio, Ezio
,
Taubenberger, Anna
in
Adoptive transfer
,
Antibodies
,
Antigenic determinants
2025
Background
Adoptive transfer of regulatory T cells (Tregs) has demonstrated safety, feasibility and early signs of efficacy in promoting immunological tolerance in inflammatory conditions such as graft-versus-host disease (GvHD). Chimeric antigen receptor (CAR)-engineered Tregs offer localized activation and suppression compared to polyclonal Tregs, but their clinical translation is limited by high manufacturing costs, lengthy developing times and fixed single-antigen specificity. To address these limitations, we employed the universal adapter Reverse CAR (RevCAR) system, which harbors a peptide epitope lacking intrinsic antigen specificity but provides flexibility in targeting through the use of an antigen-specific RevCAR Target Module (RevTM). As a proof-of-concept, we used a RevTM targeting carcinoembryonic antigen (CEA), which is highly expressed in the gastrointestinal (GI) tract, as a potential strategy to achieve localized immunosuppression in GI acute GvHD.
Methods
To support clinical translation, we established an automated, GMP-compatible, clinical-scale manufacturing process. Tregs were magnetically enriched from leukapheresis using the CliniMACS
®
Plus, followed by high-purity sorting on the MACSQuant
®
Tyto
®
. The sorted cells were virally transduced and the RevCAR Tregs were expanded on the CliniMACS Prodigy
®
to obtain clinically relevant cell numbers. The harvested products were evaluated for phenotype, stability, antigen specificity and suppressive function.
Results
Across five manufacturing runs, Tregs (CD4
+
CD25
high
CD127
low
FOXP3
+
) with a median initial purity of 94% were expanded to achieve a median therapeutic yield of 602 × 10
6
cells. The final product maintained a high purity (median: 91.9%) and exhibited high RevCAR expression (median: 60% RevCAR
+
). Mass cytometry analysis revealed that expanded RevCAR Tregs predominantly exhibited a central memory phenotype with high expression of functional and homing markers. Under experimental pro-inflammatory conditions, the cells maintained stable FOXP3 and Helios expression with minimal pro-inflammatory cytokine production. Importantly, RevCAR Tregs showed antigen-specific activation upon target engagement via the CEA-specific RevTM and robust, dose-dependent suppression.
Conclusion
The study establishes a scalable, GMP-compatible process for manufacturing pure, stable and functional universal RevCAR Tregs for clinical applications. Furthermore, the RevCAR system offers a promising approach toward an allogenic, off-the-shelf Treg therapy capable of treating diverse immune-mediated diseases with spatial precision.
Journal Article
Product experience
by
Schifferstein, H. (Hendrik)
,
Hekkert, Paul
in
Brand choice
,
Consumer behavior
,
Consumers' preferences
2008,2007,2011
Product Experience brings together research that investigates how people experience products: durable, non-durable, or virtual.In contrast to other books, the present book takes a very broad, possibly all-inclusive perspective, on how people experience products.It thereby bridges gaps between several areas within psychology (e.g.
Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody
2020
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a newly emerged coronavirus that is responsible for the current pandemic of coronavirus disease 2019 (COVID-19), which has resulted in more than 3.7 million infections and 260,000 deaths as of 6 May 2020
1
,
2
. Vaccine and therapeutic discovery efforts are paramount to curb the pandemic spread of this zoonotic virus. The SARS-CoV-2 spike (S) glycoprotein promotes entry into host cells and is the main target of neutralizing antibodies. Here we describe several monoclonal antibodies that target the S glycoprotein of SARS-CoV-2, which we identified from memory B cells of an individual who was infected with severe acute respiratory syndrome coronavirus (SARS-CoV) in 2003. One antibody (named S309) potently neutralizes SARS-CoV-2 and SARS-CoV pseudoviruses as well as authentic SARS-CoV-2, by engaging the receptor-binding domain of the S glycoprotein. Using cryo-electron microscopy and binding assays, we show that S309 recognizes an epitope containing a glycan that is conserved within the
Sarbecovirus
subgenus, without competing with receptor attachment. Antibody cocktails that include S309 in combination with other antibodies that we identified further enhanced SARS-CoV-2 neutralization, and may limit the emergence of neutralization-escape mutants. These results pave the way for using S309 and antibody cocktails containing S309 for prophylaxis in individuals at a high risk of exposure or as a post-exposure therapy to limit or treat severe disease.
The monoclonal antibody S309, identified from memory B cells of an individual infected with SARS-CoV in 2003, or antibody cocktails that contain this antibody potently neutralize SARS-CoV-2.
Journal Article
Toward a global reference database of COI barcodes for marine zooplankton
by
Laakmann Silke
,
Wang Minxiao
,
Martell, Luis
in
Biodiversity
,
Climate change
,
Cytochrome oxidase I
2021
Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change.
Journal Article
Pteropods make thinner shells in the upwelling region of the California Current Ecosystem
2021
Shelled pteropods are widely regarded as bioindicators for ocean acidification, because their fragile aragonite shells are susceptible to increasing ocean acidity. While short-term incubations have demonstrated that pteropod calcification is negatively impacted by ocean acidification, we know little about net calcification in response to varying ocean conditions in natural populations. Here, we examine in situ calcification of
Limacina helicina
pteropods collected from the California Current Ecosystem, a coastal upwelling system with strong spatial gradients in ocean carbonate chemistry, dissolved oxygen and temperature. Depth-averaged pH ranged from 8.03 in warmer offshore waters to 7.77 in cold CO
2
-rich waters nearshore. Based on high-resolution micro-CT technology, we showed that shell thickness declined by ~ 37% along the upwelling gradient from offshore to nearshore water. Dissolution marks covered only ~ 2% of the shell surface area and were not associated with the observed variation in shell thickness. We thus infer that pteropods make thinner shells where upwelling brings more acidified and colder waters to the surface. Probably the thinner shells do not result from enhanced dissolution, but are due to a decline in calcification. Reduced calcification of pteropods is likely to have major ecological and biogeochemical implications for the cycling of calcium carbonate in the oceans.
Journal Article
Text representation : linguistic and psycholinguistic aspects
by
Spooren, Wilbert
,
Sanders, Ted
,
Schilperoord, Joost
in
Congresses
,
Discourse analysis
,
Discourse analysis -- Psychological aspects -- Congresses
2001
This book brings together linguistics and psycholinguistics. Text representation is considered a cognitive entity: a mental construct that plays a crucial role in both text production and text understanding.The focus is on referential and relational coherence and the role of linguistic characteristics as processing instructions from a text linguistic and discourse psychology point of view. Consequently, this book presents various research methodologies: linguistic analysis, text analysis, corpus linguistics, computational linguistics, argumentation analysis, and the experimental psycholinguistic study of text processing. The authors compare, test, and evaluate linguistic and processing theories of text representation.A state of the art volume in an emerging field of interest, located at the very heart of our communicative behavior: the study of text and text representation.
Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity
by
Fröhlich, Klemens
,
Fahrner, Matthias
,
Vogele, Daniel
in
631/114/1314
,
631/1647/296
,
631/45/475
2022
Numerous software tools exist for data-independent acquisition (DIA) analysis of clinical samples, necessitating their comprehensive benchmarking. We present a benchmark dataset comprising real-world inter-patient heterogeneity, which we use for in-depth benchmarking of DIA data analysis workflows for clinical settings. Combining spectral libraries, DIA software, sparsity reduction, normalization, and statistical tests results in 1428 distinct data analysis workflows, which we evaluate based on their ability to correctly identify differentially abundant proteins. From our dataset, we derive bootstrap datasets of varying sample sizes and use the whole range of bootstrap datasets to robustly evaluate each workflow. We find that all DIA software suites benefit from using a gas-phase fractionated spectral library, irrespective of the library refinement used. Gas-phase fractionation-based libraries perform best against two out of three reference protein lists. Among all investigated statistical tests non-parametric permutation-based statistical tests consistently perform best.
Data independent acquisition (DIA) has been gaining momentum in clinical proteomics. Here, the authors create a benchmark dataset comprising inter-patient heterogeneity to compare popular DIA data analysis workflows for identifying differentially abundant proteins.
Journal Article
Childhood adversity and parenting behavior: the role of oxytocin receptor gene polymorphisms
by
Dittrich, Katja
,
Hartmann, Annette M.
,
Resch, Franz
in
Adults
,
Adverse childhood experiences
,
Alleles
2019
Previous research revealed experiences of childhood adversity (CA) to be related to less favorable parenting behavior. It can further be expected that maternal oxytocin receptor (OXTR) genes may influence parenting behavior and moderate relationships between CA and parenting behavior. Moreover, associations between the OXTR gene and plasma oxytocin (OT) have been discussed. The present study investigated main effects of the OXTR gene on parenting behavior and plasma OT of mothers, and moderating effects of the OXTR gene on the relationship between mothers’ experiences of CA and parenting behavior. We relied on a sample of 193 mothers and their on average 8-year-old children. Maternal experiences of CA were assessed using a standardized interview. A questionnaire for the assessment of child abuse potential and observations of mother–child interaction were used as indicators of parenting behavior. For mothers, we analyzed three polymorphisms (rs53576, rs1042778, rs2254298) of the OXTR gene and plasma OT. Only the rs53576 was associated with mothers’ parenting behavior, specifically with maternal sensitivity. The rs2254298 significantly moderated relations between mothers’ experiences of CA and parenting behavior. Significant relations could be found only for mothers who were homozygous for the G allele. The G allele of the rs2254298 was further related to increased plasma OT levels. Our findings underline the importance of considering genetic variation when investigating consequences of CA and developing intervention programs that are adapted to an individual’s needs.
Journal Article
Operando probing of the surface chemistry during the Haber–Bosch process
by
Katja Mathiesen, Jette
,
Shipilin, Mikhail
,
Degerman, David
in
140/146
,
639/638/542/971
,
639/638/77/885
2024
The large-scale conversion of N
2
and H
2
into NH
3
(refs.
1
,
2
) over Fe and Ru catalysts
3
for fertilizer production occurs through the Haber–Bosch process, which has been considered the most important scientific invention of the twentieth century
4
. The active component of the catalyst enabling the conversion was variously considered to be the oxide
5
, nitride
2
, metallic phase or surface nitride
6
, and the rate-limiting step has been associated with N
2
dissociation
7
–
9
, reaction of the adsorbed nitrogen
10
and also NH
3
desorption
11
. This range of views reflects that the Haber–Bosch process operates at high temperatures and pressures, whereas surface-sensitive techniques that might differentiate between different mechanistic proposals require vacuum conditions. Mechanistic studies have accordingly long been limited to theoretical calculations
12
. Here we use X-ray photoelectron spectroscopy—capable of revealing the chemical state of catalytic surfaces and recently adapted to operando investigations
13
of methanol
14
and Fischer–Tropsch synthesis
15
—to determine the surface composition of Fe and Ru catalysts during NH
3
production at pressures up to 1 bar and temperatures as high as 723 K. We find that, although flat and stepped Fe surfaces and Ru single-crystal surfaces all remain metallic, the latter are almost adsorbate free, whereas Fe catalysts retain a small amount of adsorbed N and develop at lower temperatures high amine (NH
x
) coverages on the stepped surfaces. These observations indicate that the rate-limiting step on Ru is always N
2
dissociation. On Fe catalysts, by contrast and as predicted by theory
16
, hydrogenation of adsorbed N atoms is less efficient to the extent that the rate-limiting step switches following temperature lowering from N
2
dissociation to the hydrogenation of surface species.
Using X-ray photoelectron spectroscopy, the surface composition of iron and ruthenium catalysts during ammonia synthesis at pressures up to 1 bar and temperatures as high as 723 K can be revealed.
Journal Article