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With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered, which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interacting nodes connected by edges whose weights can be determined by either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure, and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.

Objective The objectives were to bring light on fluoride to control dentin hypersensitivity (DHS) and prevent root caries. Materials and methods Search strategy included papers mainly published in PubMed, Medline from October 2000 to October 2011. Results Fluoride toothpaste shows a fair effect on sensitive teeth when combined with dentin fluid-obstructing agents such as different metal ions, potassium, and oxalates. Fluoride in solution, gel, and varnish give an instant and long-term relief of dentin and bleaching hypersensitivity. Combined with laser technology, a limited additional positive effect is achieved. Prevention of root caries is favored by toothpaste with 5,000 ppm F and by fluoride rinsing with 0.025–0.1 % F solutions, as the application of fluoride gel or fluoride varnish three to four times a year. Fluoride measures with tablets, chewing gum, toothpick, and flossing may be questioned because of unfavorable cost effectiveness ratio. Conclusion Most fluoride preparations in combination with dentin fluid obstruction agents are beneficial to reduce DHS. Prevention of root caries is favorable with higher fluoride concentrations in, e.g., toothpaste. Clinical relevance Fluoride is an effective agent to control DHS and to prevent root caries particularly when used in higher concentrations.

Machine learning (also called data-driven) methods have become popular in modeling flood inundations across river basins. Among data-driven methods, traditional machine learning (ML) approaches are widely used to model flood events, and recently deep learning (DL) approaches have gained more attention across the world. In this paper, we reviewed recently published literature on ML and DL applications for flood modeling for various hydrologic and catchment characteristics. Our extensive literature review shows that DL models produce better accuracy compared to traditional approaches. Unlike physically based models, ML/DL models suffer from the lack of using expert knowledge in modeling flood events. Apart from challenges in implementing a uniform modeling approach across river basins, the lack of benchmark data to evaluate model performance is a limiting factor for developing efficient ML/DL models for flood inundation modeling.

Underwater image restoration is of significant importance in unveiling the underwater world. Numerous techniques and algorithms have been developed in recent decades. However, due to fundamental difficulties associated with imaging/sensing, lighting, and refractive geometric distortions in capturing clear underwater images, no comprehensive evaluations have been conducted with regard to underwater image restoration. To address this gap, we constructed a large-scale real underwater image dataset, dubbed Heron Island Coral Reef Dataset (‘HICRD’), for the purpose of benchmarking existing methods and supporting the development of new deep-learning based methods. We employed an accurate water parameter (diffuse attenuation coefficient) to generate the reference images. There are 2000 reference restored images and 6003 original underwater images in the unpaired training set. Furthermore, we present a novel method for underwater image restoration based on an unsupervised image-to-image translation framework. Our proposed method leveraged contrastive learning and generative adversarial networks to maximize the mutual information between raw and restored images. Extensive experiments with comparisons to recent approaches further demonstrate the superiority of our proposed method. Our code and dataset are both publicly available.

High-resolution RGB-D sensors are widely used in computer vision, manufacturing, and robotics. The depth maps from these sensors have inherently high measurement uncertainty that includes both systematic and non-systematic noise. These noisy depth estimates degrade the quality of scans, resulting in less accurate 3D reconstruction, making them unsuitable for some high-precision applications. In this paper, we focus on quantifying the uncertainty in the depth maps of high-resolution RGB-D sensors for the purpose of improving 3D reconstruction accuracy. To this end, we estimate the noise model for a recent high-precision RGB-D structured light sensor called Zivid when mounted on a robot arm. Our proposed noise model takes into account the measurement distance and angle between the sensor and the measured surface. We additionally analyze the effect of background light, exposure time, and the number of captures on the quality of the depth maps obtained. Our noise model seamlessly integrates with well-known classical and modern neural rendering-based algorithms, from KinectFusion to Point-SLAM methods using bilinear interpolation as well as 3D analytical functions. We collect a high-resolution RGB-D dataset and apply our noise model to improve tracking and produce higher-resolution 3D models.

Background Leaf hairiness (pubescence) is an important plant phenotype which regulates leaf transpiration, affects sunlight penetration, and provides increased resistance or susceptibility against certain insects. Cotton accounts for 80% of global natural fibre production, and in this crop leaf hairiness also affects fibre yield and value. Currently, this key phenotype is measured visually which is slow, laborious and operator-biased. Here, we propose a simple, high-throughput and low-cost imaging method combined with a deep-learning model, HairNet, to classify leaf images with great accuracy. Results A dataset of ∼  13,600 leaf images from 27 genotypes of Cotton was generated. Images were collected from leaves at two different positions in the canopy (leaf 3 & leaf 4), from genotypes grown in two consecutive years and in two growth environments (glasshouse & field). This dataset was used to build a 4-part deep learning model called HairNet. On the whole dataset, HairNet achieved accuracies of 89% per image and 95% per leaf. The impact of leaf selection, year and environment on HairNet accuracy was then investigated using subsets of the whole dataset. It was found that as long as examples of the year and environment tested were present in the training population, HairNet achieved very high accuracy per image (86–96%) and per leaf (90–99%). Leaf selection had no effect on HairNet accuracy, making it a robust model. Conclusions HairNet classifies images of cotton leaves according to their hairiness with very high accuracy. The simple imaging methodology presented in this study and the high accuracy on a single image per leaf achieved by HairNet demonstrates that it is implementable at scale. We propose that HairNet replaces the current visual scoring of this trait. The HairNet code and dataset can be used as a baseline to measure this trait in other species or to score other microscopic but important phenotypes.

Cotton accounts for 80% of the global natural fibre production. Its leaf hairiness affects insect resistance, fibre yield, and economic value. However, this phenotype is still qualitatively assessed by visually attributing a Genotype Hairiness Score (GHS) to a leaf/plant, or by using the HairNet deep-learning model which also outputs a GHS. Here, we introduce HairNet2, a quantitative deep-learning model which detects leaf hairs (trichomes) from images and outputs a segmentation mask and a Leaf Trichome Score (LTS). Trichomes of 1250 images were annotated (AnnCoT) and a combination of six Feature Extractor modules and five Segmentation modules were tested alongside a range of loss functions and data augmentation techniques. HairNet2 was further validated on the dataset used to build HairNet (CotLeaf-1), a similar dataset collected in two subsequent seasons (CotLeaf-2), and a dataset collected on two genetically diverse populations (CotLeaf-X). The main findings of this study are that (1) leaf number, environment and image position did not significantly affect results, (2) although GHS and LTS mostly correlated for individual GHS classes, results at the genotype level revealed a strong LTS heterogeneity within a given GHS class, (3) LTS correlated strongly with expert scoring of individual images. HairNet2 is the first quantitative and scalable deep-learning model able to measure leaf hairiness. Results obtained with HairNet2 concur with the qualitative values used by breeders at both extremes of the scale (GHS 1-2, and 5-5+), but interestingly suggest a reordering of genotypes with intermediate values (GHS 3-4+). Finely ranking mild phenotypes is a difficult task for humans. In addition to providing assistance with this task, HairNet2 opens the door to selecting plants with specific leaf hairiness characteristics which may be associated with other beneficial traits to deliver better varieties.

Deep learning in the last decade has been very successful in computer vision and machine learning applications. Deep learning networks provide state-of-the-art performance in almost all of the applications where they have been employed. In this review, we aim to summarize the essential deep learning techniques and then apply them to COVID-19, a highly contagious viral infection that wreaks havoc on everyone’s lives in various ways. According to the World Health Organization and scientists, more testing potentially helps contain the virus’s spread. The use of chest radiographs is one of the early screening tests for determining disease, as the infection affects the lungs severely. To detect the COVID-19 infection, this experimental survey investigates and automates the process of testing by employing state-of-the-art deep learning classifiers. Moreover, the viruses are of many types, such as influenza, hepatitis, and COVID. Here, our focus is on COVID-19. Therefore, we employ binary classification, where one class is COVID-19 while the other viral infection types are treated as non-COVID-19 in the radiographs. The classification task is challenging due to the limited number of scans available for COVID-19 and the minute variations in the viral infections. We aim to employ current state-of-the-art CNN architectures, compare their results, and determine whether deep learning algorithms can handle the crisis appropriately and accurately. We train and evaluate 34 models. We also provide the limitations and future direction.

Zero-shot learning, the task of learning to recognize new classes not seen during training, has received considerable attention in the case of 2D image classification. However, despite the increasing ubiquity of 3D sensors, the corresponding 3D point cloud classification problem has not been meaningfully explored and introduces new challenges. In this paper, we identify some of the challenges and apply 2D Zero-Shot Learning (ZSL) methods in the 3D domain to analyze the performance of existing models. Then, we propose a novel approach to address the issues specific to 3D ZSL. We first present an inductive ZSL process and then extend it to the transductive ZSL and Generalized ZSL (GZSL) settings for 3D point cloud classification. To this end, a novel loss function is developed that simultaneously aligns seen semantics with point cloud features and takes advantage of unlabeled test data to address some known issues (e.g., the problems of domain adaptation, hubness, and data bias). While designed for the particularities of 3D point cloud classification, the method is shown to also be applicable to the more common use-case of 2D image classification. An extensive set of experiments is carried out, establishing state-of-the-art for ZSL and GZSL on synthetic (ModelNet40, ModelNet10, McGill) and real (ScanObjectNN) 3D point cloud datasets.

Embedding data in hyperbolic spaces has proven beneficial for many advanced machine learning applications. However, working in hyperbolic spaces is not without difficulties as a result of its curved geometry (e.g., computing the Fréchet mean of a set of points requires an iterative algorithm). In Euclidean spaces, one can resort to kernel machines that not only enjoy rich theoretical properties but that can also lead to superior representational power (e.g., infinite-width neural networks). In this paper, we introduce valid kernel functions for hyperbolic representations. This brings in two major advantages, 1. kernelization will pave the way to seamlessly benefit the representational power from kernel machines in conjunction with hyperbolic embeddings, and 2. the rich structure of the Hilbert spaces associated with kernel machines enables us to simplify various operations involving hyperbolic data. That said, identifying valid kernel functions on curved spaces is not straightforward and is indeed considered an open problem in the learning community. Our work addresses this gap and develops several positive definite kernels in hyperbolic spaces (modeled by a Poincaré ball), the proposed kernels include the rich universal ones (e.g., Poincaré RBF kernel), or realize the multiple kernel learning scheme (e.g., Poincaré radial kernel). We comprehensively study the proposed kernels on a variety of challenging tasks including few-shot learning, zero-shot learning, person re-identification, deep metric learning, knowledge distillation and self-supervised learning. The consistent performance gain over different tasks shows the benefits of the kernelization for hyperbolic representations.