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20 result(s) for "Poletti, Nicholas"
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The Circumgalactic Medium from the CAMELS Simulations: Forecasting Constraints on Feedback Processes from Future Sunyaev–Zeldovich Observations
It is important to understand the cycle of baryons through the circumgalactic medium (CGM) in the context of galaxy formation and evolution. In this study, we forecast constraints on the feedback processes heating the CGM with current and future Sunyaev–Zeldovich (SZ) observations. To constrain these processes, we use a suite of cosmological simulations, the Cosmology and Astrophysics with MachinE Learning Simulations (CAMELS). CAMELS varies four different feedback parameters of two previously existing hydrodynamical simulations, IllustrisTNG and SIMBA. We capture the dependences of SZ radial profiles on these feedback parameters with an emulator, calculate their derivatives, and forecast future constraints on these feedback parameters from upcoming experiments. We find that for a galaxy sample similar to what would be obtained with the Dark Energy Spectroscopic Instrument at the Simons Observatory, all four feedback parameters can be constrained (some within the 10% level), indicating that future observations will be able to further restrict the parameter space for these subgrid models. Given the modeled galaxy sample and forecasted errors in this work, we find that the inner SZ profiles contribute more to the constraining power than the outer profiles. Finally, we find that, despite the wide range of parameter variation in active galactic feedback in the CAMELS simulation suite, we cannot reproduce the thermal SZ signal of galaxies selected by the Baryon Oscillation Spectroscopic Survey as measured by the Atacama Cosmology Telescope.
The CAMELS Multifield Data Set: Learning the Universe’s Fundamental Parameters with Artificial Intelligence
We present the Cosmology and Astrophysics with Machine Learning Simulations (CAMELS) Multifield Data set (CMD), a collection of hundreds of thousands of 2D maps and 3D grids containing many different properties of cosmic gas, dark matter, and stars from more than 2000 distinct simulated universes at several cosmic times. The 2D maps and 3D grids represent cosmic regions that span ∼100 million light-years and have been generated from thousands of state-of-the-art hydrodynamic and gravity-only N-body simulations from the CAMELS project. Designed to train machine-learning models, CMD is the largest data set of its kind containing more than 70 TB of data. In this paper we describe CMD in detail and outline a few of its applications. We focus our attention on one such task, parameter inference, formulating the problems we face as a challenge to the community. We release all data and provide further technical details at https://camels-multifield-dataset.readthedocs.io.
The CAMELS Project: Public Data Release
The Cosmology and Astrophysics with Machine Learning Simulations (CAMELS) project was developed to combine cosmology with astrophysics through thousands of cosmological hydrodynamic simulations and machine learning. CAMELS contains 4233 cosmological simulations, 2049 N-body simulations, and 2184 state-of-the-art hydrodynamic simulations that sample a vast volume in parameter space. In this paper, we present the CAMELS public data release, describing the characteristics of the CAMELS simulations and a variety of data products generated from them, including halo, subhalo, galaxy, and void catalogs, power spectra, bispectra, Lyα spectra, probability distribution functions, halo radial profiles, and X-rays photon lists. We also release over 1000 catalogs that contain billions of galaxies from CAMELS-SAM: a large collection of N-body simulations that have been combined with the Santa Cruz semianalytic model. We release all the data, comprising more than 350 terabytes and containing 143,922 snapshots, millions of halos, galaxies, and summary statistics. We provide further technical details on how to access, download, read, and process the data at https://camels.readthedocs.io.
Spectrally resolved autofluorescence imaging in posterior uveitis
Clinical discrimination of posterior uveitis entities remains a challenge. This exploratory, cross-sectional study investigated the green (GEFC) and red emission fluorescent components (REFC) of retinal and choroidal lesions in posterior uveitis to facilitate discrimination of the different entities. Eyes were imaged by color fundus photography, spectrally resolved fundus autofluorescence (Color-FAF) and optical coherence tomography. Retinal/choroidal lesions’ intensities of GEFC (500–560 nm) and REFC (560–700 nm) were determined, and intensity-normalized Color-FAF images were compared for birdshot chorioretinopathy, ocular sarcoidosis, acute posterior multifocal placoid pigment epitheliopathy (APMPPE), and punctate inner choroidopathy (PIC). Multivariable regression analyses were performed to reveal possible confounders. 76 eyes of 45 patients were included with a total of 845 lesions. Mean GEFC/REFC ratios were 0.82 ± 0.10, 0.92 ± 0.11, 0.86 ± 0.10, and 1.09 ± 0.19 for birdshot chorioretinopathy, sarcoidosis, APMPPE, and PIC lesions, respectively, and were significantly different in repeated measures ANOVA ( p  < 0.0001). Non-pigmented retinal/choroidal lesions, macular neovascularizations, and fundus areas of choroidal thinning featured predominantly GEFC, and pigmented retinal lesions predominantly REFC. Color-FAF imaging revealed involvement of both, short- and long-wavelength emission fluorophores in posterior uveitis. The GEFC/REFC ratio of retinal and choroidal lesions was significantly different between distinct subgroups. Hence, this novel imaging biomarker could aid diagnosis and differentiation of posterior uveitis entities.
The Simons Observatory: Galactic Science Goals and Forecasts
Observing in six frequency bands from 27 to 280 GHz over a large sky area, the Simons Observatory (SO) is poised to address many questions in Galactic astrophysics in addition to its principal cosmological goals. In this work, we provide quantitative forecasts on astrophysical parameters of interest for a range of Galactic science cases. We find that SO can: constrain the frequency spectrum of polarized dust emission at a level of Δβ d ≲ 0.01 and thus test models of dust composition that predict that β d in polarization differs from that measured in total intensity; measure the correlation coefficient between polarized dust and synchrotron emission with a factor of two greater precision than current constraints; exclude the nonexistence of exo-Oort clouds at roughly 2.9σ if the true fraction is similar to the detection rate of giant planets; map more than 850 molecular clouds with at least 50 independent polarization measurements at 1 pc resolution; detect or place upper limits on the polarization fractions of CO(2–1) emission and anomalous microwave emission at the 0.1% level in select regions; and measure the correlation coefficient between optical starlight polarization and microwave polarized dust emission in 1° patches for all lines of sight with N H ≳ 2 × 1020 cm−2. The goals and forecasts outlined here provide a roadmap for other microwave polarization experiments to expand their scientific scope via Milky Way astrophysics. 37 37 A supplement describing author contributions to this paper can be found at https://simonsobservatory.org/wp-content/uploads/2022/02/SO_GS_Contributions.pdf.
Novel genetic loci affecting facial shape variation in humans
The human face represents a combined set of highly heritable phenotypes, but knowledge on its genetic architecture remains limited, despite the relevance for various fields. A series of genome-wide association studies on 78 facial shape phenotypes quantified from 3-dimensional facial images of 10,115 Europeans identified 24 genetic loci reaching study-wide suggestive association (p < 5 × 10−8), among which 17 were previously unreported. A follow-up multi-ethnic study in additional 7917 individuals confirmed 10 loci including six unreported ones (padjusted < 2.1 × 10−3). A global map of derived polygenic face scores assembled facial features in major continental groups consistent with anthropological knowledge. Analyses of epigenomic datasets from cranial neural crest cells revealed abundant cis-regulatory activities at the face-associated genetic loci. Luciferase reporter assays in neural crest progenitor cells highlighted enhancer activities of several face-associated DNA variants. These results substantially advance our understanding of the genetic basis underlying human facial variation and provide candidates for future in-vivo functional studies.
Evaluation of the 2022 West Nile virus forecasting challenge, USA
Background West Nile virus (WNV) is the most common cause of mosquito-borne disease in the continental USA, with an average of ~1200 severe, neuroinvasive cases reported annually from 2005 to 2021 (range 386–2873). Despite this burden, efforts to forecast WNV disease to inform public health measures to reduce disease incidence have had limited success. Here, we analyze forecasts submitted to the 2022 WNV Forecasting Challenge, a follow-up to the 2020 WNV Forecasting Challenge. Methods Forecasting teams submitted probabilistic forecasts of annual West Nile virus neuroinvasive disease (WNND) cases for each county in the continental USA for the 2022 WNV season. We assessed the skill of team-specific forecasts, baseline forecasts, and an ensemble created from team-specific forecasts. We then characterized the impact of model characteristics and county-specific contextual factors (e.g., population) on forecast skill. Results Ensemble forecasts for 2022 anticipated a season at or below median long-term WNND incidence for nearly all (> 99%) counties. More counties reported higher case numbers than anticipated by the ensemble forecast median, but national caseload (826) was well below the 10-year median (1386). Forecast skill was highest for the ensemble forecast, though the historical negative binomial baseline model and several team-submitted forecasts had similar forecast skill. Forecasts utilizing regression-based frameworks tended to have more skill than those that did not and models using climate, mosquito surveillance, demographic, or avian data had less skill than those that did not, potentially due to overfitting. County-contextual analysis showed strong relationships with the number of years that WNND had been reported and permutation entropy (historical variability). Evaluations based on weighted interval score and logarithmic scoring metrics produced similar results. Conclusions The relative success of the ensemble forecast, the best forecast for 2022, suggests potential gains in community ability to forecast WNV, an improvement from the 2020 Challenge. Similar to the previous challenge, however, our results indicate that skill was still limited with general underprediction despite a relative low incidence year. Potential opportunities for improvement include refining mechanistic approaches, integrating additional data sources, and considering different approaches for areas with and without previous cases. Graphical Abstract
The Terrestrial Biosphere Model Farm
Model Intercomparison Projects (MIPs) are fundamental to our understanding of how the land surface responds to changes in climate. However, MIPs are challenging to conduct, requiring the organization of multiple, decentralized modeling teams throughout the world running common protocols. We explored centralizing these models on a single supercomputing system. We ran nine offline terrestrial biosphere models through the Terrestrial Biosphere Model Farm: CABLE, CENTURY, HyLand, ISAM, JULES, LPJ‐GUESS, ORCHIDEE, SiB‐3, and SiB‐CASA. All models were wrapped in a software framework driven with common forcing data, spin‐up, and run protocols specified by the Multi‐scale Synthesis and Terrestrial Model Intercomparison Project (MsTMIP) for years 1901–2100. We ran more than a dozen model experiments. We identify three major benefits and three major challenges. The benefits include: (a) processing multiple models through a MIP is relatively straightforward, (b) MIP protocols are run consistently across models, which may reduce some model output variability, and (c) unique multimodel experiments can provide novel output for analysis. The challenges are: (a) technological demand is large, particularly for data and output storage and transfer; (b) model versions lag those from the core model development teams; and (c) there is still a need for intellectual input from the core model development teams for insight into model results. A merger with the open‐source, cloud‐based Predictive Ecosystem Analyzer (PEcAn) ecoinformatics system may be a path forward to overcoming these challenges. Plain Language Summary Comparing models is fundamental to our understanding of how the land surface responds to changes in climate. However, these comparisons are challenging to conduct, requiring the organization of multiple, decentralized teams throughout the world. We explored centralizing these models on a single supercomputing system. The models were all run the same way. We ran more than a dozen model experiments. We identify three major benefits and three major challenges. The benefits include: (a) the centralized system takes a lot of burden off individual teams; (b) running models the same way helps to identify differences in how the world is represented in the models; and (c) the system allows us to run many model experiments relatively quickly. The challenges are: (a) lots of models require lots of data storage and transfer needs; (b) model versions lag those from the core model development teams; and (c) there is still a need for intellectual input from the core model development teams for insight into model results. Another system, called PEcAn, which has a lot of tools that can help overcome these challenges, can potentially be used in future work. Key Points We ran nine terrestrial biosphere models centralized on a common computing framework The Farm allows multiple MIP experiments to be run relatively quickly and uniformly Challenges included technological demand, model versioning, and interpretation of results