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Atomic Robo
\"In 1923, Nikola Tesla's career is in its twilight until he unveils a robot with automatic intelligence--Atomic Robo! Granted full American citizenship in return for his participation in a top secret military operation in 1938, Atomic Robo goes on to found Tesladyne, a think tank dedicated to exploring the fringes of scientific inquiry. After decades of dealing with all manner of weirdness, Atomic Robo and the so-called Action Scientists of Tesladyne became the go-to defense force against the unexplained\"--V. 1, cover p. [4].
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Biodiversity of arbuscular mycorrhizal fungi and ecosystem function
Arbuscular mycorrhizal (AM) fungi play important functional roles in ecosystems, including the uptake and transfer of nutrients, modification of the physical soil environment and alteration of plant interactions with other biota. Several studies have demonstrated the potential for variation in AM fungal diversity to also affect ecosystem functioning, mainly via effects on primary productivity. Diversity in these studies is usually characterized in terms of the number of species, unique evolutionary lineages or complementary mycorrhizal traits, as well as the ability of plants to discriminate among AM fungi in space and time. However, the emergent outcomes of these relationships are usually indirect, and thus context dependent, and difficult to predict with certainty. Here, we advocate a fungal-centric view of AM fungal biodiversity–ecosystem function relationships that focuses on the direct and specific links betweenAMfungal fitness and consequences for their roles in ecosystems, especially highlighting functional diversity in hyphal resource economics. We conclude by arguing that an understanding of AM fungal functional diversity is fundamental to determine whether AM fungi have a role in the exploitation of marginal/novel environments (whether past, present or future) and highlight avenues for future research.
Journal Article
Deterministic processes vary during community assembly for ecologically dissimilar taxa
The continuum hypothesis states that both deterministic and stochastic processes contribute to the assembly of ecological communities. However, the contextual dependency of these processes remains an open question that imposes strong limitations on predictions of community responses to environmental change. Here we measure community and habitat turnover across multiple vertical soil horizons at 183 sites across Scotland for bacteria and fungi, both dominant and functionally vital components of all soils but which differ substantially in their growth habit and dispersal capability. We find that habitat turnover is the primary driver of bacterial community turnover in general, although its importance decreases with increasing isolation and disturbance. Fungal communities, however, exhibit a highly stochastic assembly process, both neutral and non-neutral in nature, largely independent of disturbance. These findings suggest that increased focus on dispersal limitation and biotic interactions are necessary to manage and conserve the key ecosystem services provided by these assemblages.
Both deterministic and stochastic processes likely contribute to the assembly of ecological communities. Here, Powell
et al
. measure soil microbial community and habitat turnover across Scotland and show that stochastic processes usually dominate the assembly of fungal but not bacterial communities.
Journal Article
An overview of forensic drug testing methods and their suitability for harm reduction point-of-care services
Given the current opioid crisis around the world, harm reduction agencies are seeking to help people who use drugs to do so more safely. Many harm reduction agencies are exploring techniques to test illicit drugs to identify and, where possible, quantify their constituents allowing their users to make informed decisions. While these technologies have been used for years in Europe (Nightlife Empowerment & Well-being Implementation Project, Drug Checking Service: Good Practice Standards; Trans European Drugs Information (TEDI) Workgroup, Factsheet on Drug Checking in Europe, 2011; European Monitoring Centre for Drugs and Drug Addiction, An Inventory of On-site Pill-Testing Interventions in the EU: Fact Files, 2001), they are only now starting to be utilized in this context in North America. The goal of this paper is to describe the most common methods for testing illicit substances and then, based on this broad, encompassing review, recommend the most appropriate methods for testing at point of care.
Based on our review, the best methods for point-of-care drug testing are handheld infrared spectroscopy, Raman spectroscopy, and ion mobility spectrometry; mass spectrometry is the current gold standard in forensic drug analysis. It would be prudent for agencies or clinics that can obtain the funding to contact the companies who produce these devices to discuss possible usage in a harm reduction setting. Lower tech options, such as spot/color tests and immunoassays, are limited in their use but affordable and easy to use.
Journal Article
Soil physico-chemical properties are critical for predicting carbon storage and nutrient availability across Australia
Soil carbon and nutrient availability play crucial roles in ecosystem sustainability, and they are controlled by the interaction of climatic, biotic, and soil physico-chemical variables. Although soil physico-chemical properties have been recognized as vital variables for predicting soil organic carbon (SOC) and nutrients, their relative influence across broad geographical scales has yet to be evaluated when simultaneously considering many other drivers. Using boosted regression tree and structural equation modelling analyses of observations from topsoil (0-10 cm) and subsoil (20-30 cm) at 628 sites across Australia, we investigated the effects and relative influence of climate (mean annual temperature and aridity index), plant productivity, soil biodiversity (bacterial and fungal richness), and soil physical (clay and silt) and chemical (pH and iron) properties on SOC content and nutrient availability (i.e. nitrogen, phosphorus, and potassium). Among these variables, we found that soil physico-chemical properties primarily predicted the continent-scale SOC storage and nutrient availability. In contrast, climate, plant productivity, and soil biodiversity played relatively small roles. The importance of physico-chemical properties was evident across soil depths and ecosystem types (i.e. tropical, temperate, arid, and cropland). Our findings point to the need to better understand the role of soil physico-chemical properties in soil carbon and nutrient cycling and including these variables in predictions of SOC and nutrient dynamics at the ecosystem to continental scale.
Journal Article
Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach
Soil microorganisms play key roles in ecosystem functioning and are known to be influenced by biotic and abiotic factors, such as plant cover or edaphic parameters. New Caledonia, a biodiversity hotspot located in the southwest Pacific, is one-third covered by ultramafic substrates. These types of soils are notably characterised by low nutrient content and high heavy metal concentrations. Ultramafic outcrops harbour diverse vegetation types and remarkable plant diversity. In this study, we aimed to assess soil bacterial and fungal diversity in New Caledonian ultramafic substrates and to determine whether floristic composition, edaphic parameters and geographical factors affect this microbial diversity. Therefore, four plant formation types at two distinct sites were studied. These formations represent different stages in a potential chronosequence. Soil cores, according to a given sampling procedure, were collected to assess microbial diversity using a metagenomic approach, and to characterise the physico-chemical parameters. A botanical inventory was also performed. Our results indicated that microbial richness, composition and abundance were linked to the plant cover type and the dominant plant species. Furthermore, a large proportion of Ascomycota phylum (fungi), mostly in non-rainforest formations, and Planctomycetes phylum (bacteria) in all formations were observed. Interestingly, such patterns could be indicators of past disturbances that occurred on different time scales. Furthermore, the bacteria and fungi were influenced by diverse edaphic parameters as well as by the interplay between these two soil communities. Another striking finding was the existence of a site effect. Differences in microbial communities between geographical locations may be explained by dispersal limitation in the context of the biogeographical island theory. In conclusion, each plant formation at each site possesses is own microbial community resulting from multiple interactions between abiotic and biotic factors.
Journal Article
Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere
The ecological drivers of soil biodiversity in the Southern Hemisphere remain underexplored. Here, in a continental survey comprising 647 sites, across 58 degrees of latitude between tropical Australia and Antarctica, we evaluated the major ecological patterns in soil biodiversity and relative abundance of ecological clusters within a co-occurrence network of soil bacteria, archaea and eukaryotes. Six major ecological clusters (modules) of co-occurring soil taxa were identified. These clusters exhibited strong shifts in their relative abundances with increasing distance from the equator. Temperature was the major environmental driver of the relative abundance of ecological clusters when Australia and Antarctica are analyzed together. Temperature, aridity, soil properties and vegetation types were the major drivers of the relative abundance of different ecological clusters within Australia. Our data supports significant reductions in the diversity of bacteria, archaea and eukaryotes in Antarctica vs. Australia linked to strong reductions in temperature. However, we only detected small latitudinal variations in soil biodiversity within Australia. Different environmental drivers regulate the diversity of soil archaea (temperature and soil carbon), bacteria (aridity, vegetation attributes and pH) and eukaryotes (vegetation type and soil carbon) across Australia. Together, our findings provide new insights into the mechanisms driving soil biodiversity in the Southern Hemisphere.
Journal Article
Circular linkages between soil biodiversity, fertility and plant productivity are limited to topsoil at the continental scale
The current theoretical framework suggests that tripartite positive feedback relationships between soil biodiversity, fertility and plant productivity are universal. However, empirical evidence for these relationships at the continental scale and across different soil depths is lacking.
We investigate the continental-scale relationships between the diversity of microbial and invertebrate-based soil food webs, fertility and above-ground plant productivity at 289 sites and two soil depths, that is 0–10 and 20–30 cm, across Australia.
Soil biodiversity, fertility and plant productivity are strongly positively related in surface soils. Conversely, in the deeper soil layer, the relationships between soil biodiversity, fertility and plant productivity weaken considerably, probably as a result of a reduction in biodiversity and fertility with depth. Further modeling suggested that strong positive associations among soil biodiversity–fertility and fertility–plant productivity are limited to the upper soil layer (0–10 cm), after accounting for key factors, such as distance from the equator, altitude, climate and physicochemical soil properties.
These findings highlight the importance of surface soil biodiversity for soil fertility, and suggest that any loss of surface soil could potentially break the links between soil biodiversity–fertility and/or fertility–plant productivity, which can negatively impact nutrient cycling and food production, upon which future generations depend.
Journal Article
Elevated CO2 does not increase eucalypt forest productivity on a low-phosphorus soil
Rising atmospheric CO2 stimulates photosynthesis and productivity of forests, offsetting CO2 emissions1, 2. Elevated CO2 experiments in temperate planted forests yielded ~23% increases in productivity3 over the initial years. Whether similar CO2 stimulation occurs in mature evergreen broadleaved forests on low-phosphorus (P) soils is unknown, largely due to lack of experimental evidence4. This knowledge gap creates major uncertainties in future climate projections5, 6 as a large part of the tropics is P-limited. Here, we increased atmospheric CO2 concentration in a mature broadleaved evergreen eucalypt forest for three years, in the first large-scale experiment on a P-limited site. We show that tree growth and other aboveground productivity components did not significantly increase in response to elevated CO2 in three years, despite a sustained 19% increase in leaf photosynthesis. Moreover, tree growth in ambient CO2 was strongly P-limited and increased by ~35% with added phosphorus. The findings suggest that P availability may potentially constrain CO2-enhanced productivity in P-limited forests; hence, future atmospheric CO2 trajectories may be higher than predicted by some models. As a result, coupled climate–carbon models should incorporate both nitrogen and phosphorus limitations to vegetation productivity7 in estimating future carbon sinks.
Journal Article