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result(s) for
"Quinn, Rory"
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Spatial Dynamics of Harbour Porpoise Phocoena phocoena Relative to Local Hydrodynamics and Environmental Conditions
by
Quinn, Rory
,
McGonigle, Chris
,
Pommier, Morgane
in
Accelerated flow
,
Aquatic mammals
,
Causeway
2025
Understanding the spatial dynamics of harbour porpoise (Phocoena phocoena) is crucial for effective conservation and management. The study presents a multidisciplinary approach to modelling and analysing the site occurrence and habitat use of Phocoena phocoena within the Skerries and Causeway Special Area of Conservation (SAC), identifying areas where they were seen surfacing and/or spending the most time. Using data derived from multibeam echosounders (MBES), particle size analysis of sediments, hydrodynamic modelling, and theodolite tracking observations, the study examines the influence of local hydrodynamics and environmental conditions on the spatial distribution of harbour porpoises. Kernel density analysis of 451 porpoise sightings over an 11‐day survey demonstrated that dense clusters and higher aggregations occurred within ~500 m of the shoreline. Generalised Additive Models (GAMs) identified slope, aspect, backscatter intensity and sediment grain size as the most significant environmental predictors, accounting for 47.6% of the deviance in harbour porpoise distribution. Porpoises' occurrence was particularly spatially coincident with coarser sediments (4.25–5 mm), and their distribution was highly concentrated around headlands, shoreline and within a 3‐h window before and after high water. Overall, these findings highlight the dynamic nature of harbour porpoises' use of habitat in space and time, with models predicting a high probability of porpoise encounters (> 0.6) nearshore, particularly in headland areas characterised by local flow acceleration and coarser seabeds. The study presents a robust workflow for developing a porpoise‐specific monitoring program. By leveraging multidisciplinary methodological approaches, the study provides a scientific basis for refining marine conservation measures, delivering long‐term protection for harbour porpoise habitats under existing legal and management frameworks both within and beyond the SAC boundaries. This study uses a multidisciplinary approach to model the habitat use and site occurrence of harbour porpoises, identifying areas where they were seen spending most time in the Skerries and Causeway Special Area of Conservation. The results show that porpoises are most concentrated within 500 m of the shoreline, particularly near headlands with coarse sediments and during specific tidal phases. The study highlights key environmental factors influencing porpoise distribution and emphasizes the need for targeted and strategic management of critical areas to support the protection of harbour porpoises and wider biodiversity.
Journal Article
Examining the Links between Multi-Frequency Multibeam Backscatter Data and Sediment Grain Size
2021
Acoustic methods are routinely used to provide broad scale information on the geographical distribution of benthic marine habitats and sedimentary environments. Although single-frequency multibeam echosounder surveys have dominated seabed characterisation for decades, multifrequency approaches are now gaining favour in order to capture different frequency responses from the same seabed type. The aim of this study is to develop a robust modelling framework for testing the potential application and value of multifrequency (30, 95, and 300 kHz) multibeam backscatter responses to characterize sediments’ grain size in an area with strong geomorphological gradients and benthic ecological variability. We fit a generalized linear model on a multibeam backscatter and its derivatives to examine the explanatory power of single-frequency and multifrequency models with respect to the mean sediment grain size obtained from the grab samples. A strong and statistically significant (p < 0.05) correlation between the mean backscatter and the absolute values of the mean sediment grain size for the data was noted. The root mean squared error (RMSE) values identified the 30 kHz model as the best performing model responsible for explaining the most variation (84.3%) of the mean grain size at a statistically significant output (p < 0.05) with an adjusted r2 = 0.82. Overall, the single low-frequency sources showed a marginal gain on the multifrequency model, with the 30 kHz model driving the significance of this multifrequency model, and the inclusion of the higher frequencies diminished the level of agreement. We recommend further detailed and sufficient ground-truth data to better predict sediment properties and to discriminate benthic habitats to enhance the reliability of multifrequency backscatter data for the monitoring and management of marine protected areas.
Journal Article
Temporal trends of ambulance time intervals for suspected stroke/transient ischaemic attack (TIA) before and during the COVID-19 pandemic in Ireland: a quasi-experimental study
by
Deasy, Conor
,
Quinn, Rory
,
Mc Carthy, Vera J.C.
in
ACCIDENT & EMERGENCY MEDICINE
,
Adult
,
Ambulances
2024
ObjectivesTime is a fundamental component of acute stroke and transient ischaemic attack (TIA) care, thus minimising prehospital delays is a crucial part of the stroke chain of survival. COVID-19 restrictions were introduced in Ireland in response to the pandemic, which resulted in major societal changes. However, current research on the effects of the COVID-19 pandemic on prehospital care for stroke/TIA is limited to early COVID-19 waves. Thus, we aimed to investigate the effect of the COVID-19 pandemic on ambulance time intervals and suspected stroke/TIA call volume for adults with suspected stroke and TIA in Ireland, from 2018 to 2021.DesignWe conducted a secondary data analysis with a quasi-experimental design.SettingWe used data from the National Ambulance Service in Ireland. We defined the COVID-19 period as ‘1 March 2020–31 December 2021’ and the pre-COVID-19 period ‘1 January 2018–29 February 2020’.Primary and secondary outcome measuresWe compared five ambulance time intervals: ‘allocation performance’, ‘mobilisation performance’, ‘response time’, ‘on scene time’ and ‘conveyance time’ between the two periods using descriptive and regression analyses. We also compared call volume for suspected stroke/TIA between the pre-COVID-19 and COVID-19 periods using interrupted time series analysis.ParticipantsWe included all suspected stroke/TIA cases ≥18 years who called the National Ambulance Service from 2018 to 2021.Results40 004 cases were included: 19 826 in the pre-COVID-19 period and 20 178 in the COVID-19 period. All ambulance time intervals increased during the pandemic period compared with pre-COVID-19 (p<0.001). Call volume increased during the COVID-19-period compared with the pre-COVID-19 period (p<0.001).ConclusionsA ’shock' like a pandemic has a negative impact on the prehospital phase of care for time-sensitive conditions like stroke/TIA. System evaluation and public awareness campaigns are required to ensure maintenance of prehospital stroke pathways amidst future healthcare crises. Thus, this research is relevant to routine and extraordinary prehospital service planning.
Journal Article
Residual relief modelling: digital elevation enhancement for shipwreck site characterisation
2020
Scour processes play a critical role in the preservation status of submerged historic shipwrecks. Erosion of sediment leads to enhanced exposure of archaeological sites to physical, chemical and biological processes. Current methods for identifying erosional and depositional features at wreck sites are based primarily on visual interpretation of data, which is labour-intensive and entirely subjective. The increasing availability of high-resolution multibeam echosounder–derived digital elevation models (DEMs) of historic wreck sites allows for an entirely new level of detailed interrogation and analyses of the geomorphological features associated with these. In this study, we present a residual relief modelling method for the semi-automated extraction of such depositional and erosional features at wreck sites. Relief modelling is supplemented with a breakpoint classification approach, with final separation supported by DEM visualisation enhancement techniques. We applied the method to three World War I shipwreck sites and evaluated it against traditional manual vectorisation techniques. The results suggest that the semi-automated modelling method is robust, time-effective and capable of quantifying the products of scour processes with increased objectivity. Our method holds great potential for the objective characterisation of erosional and depositional patterns and processes at wreck sites, which have important implications for site formation studies and in situ preservation of underwater cultural heritage.
Journal Article
Climate and species richness patterns of freshwater fish in North America and Europe
by
Quinn, Rory
,
McGonigle, Chris
,
Dawson, Michael
in
Animal and plant ecology
,
Animal ecology
,
Animal migration behavior
2014
AIM: To investigate the effect of climatic, historical and spatial variables on species richness patterns in freshwater fish. LOCATION: North America and Europe. METHODS: Regional species lists were used to document the spatial richness patterns. Three realms, Europe and Pacific and Atlantic North America, were identified. The numbers of species, by habitat, migration and distributional range categories, were calculated and the contributions of regional mean and seasonal temperature and rainfall, historical (realm, glaciation), and spatial (area, elevational range) variables to predicting richness were assessed using boosted regression trees, model‐averaging and spatially explicit models. RESULTS: The latitudinal temperature gradient is stronger than that for rainfall in the Atlantic realm whereas the rainfall gradient in Europe is independent of the temperature gradient. Species richness is more strongly correlated with temperature than rainfall, and the effects are stronger in the Atlantic realm than in Europe. The influence of environmental variables differs between habitat specialist and generalist species. Climate, particularly maximum monthly temperature, is the best predictor of richness in rivers whereas climate variables are less important than historical/spatial variables for diadromous species. MAIN CONCLUSIONS: Freshwater fish richness differences between realms follow differences in spatial climatic trends. The contributions of climatic, historical and spatial predictor variables vary with ecology: temperature is a better predictor than rainfall in river‐dwellers. The richness gradient is driven more by physiological than by energetic constraints on species. The importance of history is probably underestimated because of correlations with climate variables.
Journal Article
Accurate Mental Maps as an Aspect of Local Ecological Knowledge (LEK)
by
Cooper, J. Andrew G.
,
Quinn, Rory J.
,
McKenna, John
in
Coastal ecology
,
Ecological sustainability
,
Ecology
2008
A mental map of the substrate of Lough Neagh, Northern Ireland, compiled from interviews with local fishermen, is compared with maps produced by science-based techniques. The comparison reveals that the mental map is highly accurate. This finding contrasts with the spatial distortion characteristic of the classic mental map. The accuracy of the Lough Neagh map is attributed to the fact that it is a compendium of the knowledge of several generations, rather than an individual perception. Individual distortions are filtered out, and accuracy is promoted by economic self-interest. High accuracy may be characteristic of the mental maps held by artisanal exploiters of natural resources.
Journal Article
251 Profiling non-major trauma attended by the national ambulance service in 2020 and 2021
2024
IntroductionEach year, the National Ambulance Service (NAS) attends many patients who receive a working diagnosis of trauma but do not meet the full inclusion criteria for the Major Trauma Audit (MTA), hereafter referred to as non-major trauma. This study aims to profile the key characteristics of patients who experience non-major trauma.MethodsWe analysed data from the HRB-funded TRAUMA project, which uses combined data from the MTA and NAS electronic Patient Care Reports (ePCR) for 2020 and 2021. We analysed patients with a working diagnosis of trauma who do not subsequently appear in the MTA using descriptive statistics.ResultsBased on NAS ePCR data, approximately 42,000 patients in 2020 and 46,000 in 2021 received a working diagnosis of non-major trauma. Of these patients, 48.5% are female with an average age of 61.2 years (SD 26.0), and 51.5% are male, with an average age of 49.2 years (SD 25.5). The most common mechanism of injury was a fall, accounting for 36% of patients, followed by motor vehicle incidents, which accounted for 8% of patients. In total 87.7% of patients were transported to hospital by NAS following a non-major trauma incident, with the most common destinations being: Cork University Hospital (10.0%), University Hospital Limerick (9.5%) and Our Lady of Lourdes Hospital Drogheda (8.1%).ConclusionOur findings reveal a significant number of trauma cases nationally that require a pre-hospital response but do not meet the inclusion criteria for the MTA. Further analysis will demonstrate the profile of individuals that require a pre-hospital response for non-major trauma. Results are limited by the absence of data from the Dublin Fire Brigade, which handles a significant portion of trauma incidents in Dublin.
Journal Article
Temporal Trends of Ambulance Times for Suspected Stroke/Transient Ischemic Attack (TIA) Before and During the COVID-19 Pandemic in Ireland: A Retrospective Cohort Study
by
Deasy, Conor
,
Quinn, Rory
,
McCarthy, Vera
in
Cohort analysis
,
COVID-19
,
Emergency medical care
2023
Introduction:International reports suggest there have been prehospital delays for time-sensitive emergencies like stroke and TIA during the COVID-19 pandemic. The aim was to investigate the impact of the COVID-19 pandemic on ambulance times and emergency call volume for adults with suspected stroke and TIA in Ireland.Method:We conducted a retrospective cohort study of patients ≥ 18 years with suspected stroke/TIA, based on data from the National Ambulance Service. We included all cases assigned code 28 (suspected stroke/TIA) by the emergency call-taker, from 2018-2021. We compared ambulance times and emergency call volume by week, the four COVID-19 waves (defined by the Health Protection Surveillance Centre) and annually. The COVID-19 period was from March 1, 2020 - December 19, 2021 and the pre-COVID-19 period January 1, 2018 - February 29, 2020. Continuous variables were compared with t-tests and categorical variables with Pearson’s χ2 tests.Results:40,012 cases were included: 20,281 in the pre-COVID-19 period and 19,731 in the COVID-19 period. Mean patient age significantly decreased between the two periods, from 71 years (±16.5) to 69.8 years (±17.1); p<0.001. Mean ambulance response time increased between the two periods from 17 minutes 31 seconds to 18 minutes 59 seconds (p<0.001). The number of cases with symptom onset to emergency call time of >4 hours significantly increased from 5,581 to 6,060 during the COVID-19 period (p<0.001). Mean calls/day increased from 25.1/day to 30.1/day during the COVID-19 period.Conclusion:Early findings from the study suggest an increase in call volume for stroke/TIA between the COVID-19 and pre-COVID-19 periods. An increase in response times during the same periods was also found. We concluded that longer symptom-to-call times indicate a change in healthcare-seeking behavior. Sustaining high levels of compliance with stroke code protocols is crucial during healthcare crises. Future research will involve further analysis including controlling for confounders.
Journal Article
Optimising protocols for high-definition imaging of historic shipwrecks using multibeam echosounder
by
Dale, Mekayla
,
Quinn, Rory
,
McGonigle, Chris
in
Anthropology
,
Archaeological research
,
Archaeology
2019
Conservation of historic shipwrecks is prohibitively expensive and in situ preservation and recording are the preferred archaeological approaches. Non-destructive high-definition 3D imaging is therefore essential for recording and managing submerged historic shipwrecks. Multibeam echosounders (MBES), the standard tool for hydrographic survey, can produce point clouds to image complex 3D structures. However, wreck imaging is often done using MBES in traditional survey mode optimised for morphological characterisation of the seafloor. This does not necessarily provide high-definition imagery required by archaeologists. This study demonstrates key factors influencing high-definition MBES imaging of wrecks through a controlled field experiment. Results show that optimal high-definition 3D imaging is achieved through maximising the pulse rate, narrowing the angular sector, using the highest frequency and shortest pulse lengths, applied to at least 3 to 5 overlapping centreline-parallel and offset passes with additional perpendicular/oblique lines. Variations in survey design are demonstrated to exert strong controls on sounding density and distribution, with high-density on horizontal and vertical wreck surfaces enabled by a combination of overlapping passes and offset lines. Adoption of this method would result in more widespread high-definition 3D imaging of wrecks to benefit archaeological research and develop effective mitigation strategies to minimise loss of the fragile underwater resource.
Journal Article
Dynamic occupancy modeling of temperate marine fish in area‐based closures
2018
Species distribution models (SDMs) are commonly used to model the spatial structure of species in the marine environment, however, most fail to account for detectability of the target species. This can result in underestimates of occupancy, where nondetection is conflated with absence. The site occupancy model (SOM) overcomes this failure by treating occupancy as a latent variable of the model and incorporates a detection submodel to account for variability in detection rates. These have rarely been applied in the context of marine fish and never for the multiseason dynamic occupancy model (DOM). In this study, a DOM is developed for a designated species of concern, cusk (Brosme brosme), over a four‐season period. Making novel use of a high‐resolution 3‐dimensional hydrodynamic model, detectability of cusk is considered as a function of current speed and algae cover. Algal cover on the seabed is measured from video surveys to divide the study area into two distinct regions: those with canopy forming species of algae and those without (henceforth bottom types). Modeled estimates of the proportion of sites occupied in each season are 0.88, 0.45, 0.74, and 0.83. These are significantly greater than the proportion of occupied sites measured from underwater video observations which are 0.57, 0.28, 0.43, and 0.57. Individual fish are detected more frequently with increasing current speed in areas lacking canopy and less frequently with increasing current speed in areas with canopy. The results indicate that, where possible, SDM studies for all marine species should take account of detectability to avoid underestimating the proportion of sites occupied at a given study area. Sampling closed areas or areas of conservation often requires the use of nonphysical, low impact sampling methods like camera surveys. These methods inherently result in detection probabilities less than one, an issue compounded by time‐varying features of the environment that are rarely accounted for marine studies. This work highlights the use of modeled hydrodynamics as a tool to correct some of this imbalance. Detection of marine fish is often not considered when mapping their distributions. This study considers detectability as a function of hydrodynamics and bottom type. Findings show how considering detection probability affects occupancy estimates for marine fish in an area of conservation for a priority species.
Journal Article