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result(s) for
"Rahman, Rashedur"
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Improving Spatial Agreement in Machine Learning-Based Landslide Susceptibility Mapping
by
Rahman, Rashedur M.
,
Adnan, Mohammed Sarfaraz Gani
,
Ahmed, Nahian
in
accuracy
,
Algorithms
,
area
2020
Despite yielding considerable degrees of accuracy in landslide predictions, the outcomes of different landslide susceptibility models are prone to spatial disagreement; and therefore, uncertainties. Uncertainties in the results of various landslide susceptibility models create challenges in selecting the most suitable method to manage this complex natural phenomenon. This study aimed to propose an approach to reduce uncertainties in landslide prediction, diagnosing spatial agreement in machine learning-based landslide susceptibility maps. It first developed landslide susceptibility maps of Cox’s Bazar district of Bangladesh, applying four machine learning algorithms: K-Nearest Neighbor (KNN), Multi-Layer Perceptron (MLP), Random Forest (RF), and Support Vector Machine (SVM), featuring hyperparameter optimization of 12 landslide conditioning factors. The results of all the four models yielded very high prediction accuracy, with the area under the curve (AUC) values range between 0.93 to 0.96. The assessment of spatial agreement of landslide predictions showed that the pixel-wise correlation coefficients of landslide probability between various models range from 0.69 to 0.85, indicating the uncertainty in predicted landslides by various models, despite their considerable prediction accuracy. The uncertainty was addressed by establishing a Logistic Regression (LR) model, incorporating the binary landslide inventory data as the dependent variable and the results of the four landslide susceptibility models as independent variables. The outcomes indicated that the RF model had the highest influence in predicting the observed landslide locations, followed by the MLP, SVM, and KNN models. Finally, a combined landslide susceptibility map was developed by integrating the results of the four machine learning-based landslide predictions. The combined map resulted in better spatial agreement (correlation coefficients range between 0.88 and 0.92) and greater prediction accuracy (0.97) compared to the individual models. The modelling approach followed in this study would be useful in minimizing uncertainties of various methods and improving landslide predictions.
Journal Article
Detecting pelvic fracture on 3D-CT using deep convolutional neural networks with multi-orientated slab images
2021
Pelvic fracture is one of the leading causes of death in the elderly, carrying a high risk of death within 1 year of fracture. This study proposes an automated method to detect pelvic fractures on 3-dimensional computed tomography (3D-CT). Deep convolutional neural networks (DCNNs) have been used for lesion detection on 2D and 3D medical images. However, training a DCNN directly using 3D images is complicated, computationally costly, and requires large amounts of training data. We propose a method that evaluates multiple, 2D, real-time object detection systems (YOLOv3 models) in parallel, in which each YOLOv3 model is trained using differently orientated 2D slab images reconstructed from 3D-CT. We assume that an appropriate reconstruction orientation would exist to optimally characterize image features of bone fractures on 3D-CT. Multiple YOLOv3 models in parallel detect 2D fracture candidates in different orientations simultaneously. The 3D fracture region is then obtained by integrating the 2D fracture candidates. The proposed method was validated in 93 subjects with bone fractures. Area under the curve (AUC) was 0.824, with 0.805 recall and 0.907 precision. The AUC with a single orientation was 0.652. This method was then applied to 112 subjects without bone fractures to evaluate over-detection. The proposed method successfully detected no bone fractures in all except 4 non-fracture subjects (96.4%).
Journal Article
Deep learning based question answering system in Bengali
by
Tahsin Mayeesha, Tasmiah
,
Rahman, Rashedur M.
,
Md Sarwar, Abdullah
in
Benchmarks
,
Datasets
,
Deep learning
2021
Recent advances in the field of natural language processing has improved state-of-the-art performances on many tasks including question answering for languages like English. Bengali language is ranked seventh and is spoken by about 300 million people all over the world. But due to lack of data and active research on QA similar progress has not been achieved for Bengali. Unlike English, there is no benchmark large scale QA dataset collected for Bengali, no pretrained language model that can be modified for Bengali question answering and no human baseline score for QA has been established either. In this work we use state-of-the-art transformer models to train QA system on a synthetic reading comprehension dataset translated from one of the most popular benchmark datasets in English called SQuAD 2.0. We collect a smaller human annotated QA dataset from Bengali Wikipedia with popular topics from Bangladeshi culture for evaluating our models. Finally, we compare our models with human children to set up a benchmark score using survey experiments.
Journal Article
Enhancing fracture diagnosis in pelvic X-rays by deep convolutional neural network with synthesized images from 3D-CT
by
Maruo, Akihiro
,
Rahman, Rashedur
,
Hayashi, Keigo
in
631/114/1305
,
639/166/985
,
Computed tomography
2024
Pelvic fractures pose significant challenges in medical diagnosis due to the complex structure of the pelvic bones. Timely diagnosis of pelvic fractures is critical to reduce complications and mortality rates. While computed tomography (CT) is highly accurate in detecting pelvic fractures, the initial diagnostic procedure usually involves pelvic X-rays (PXR). In recent years, many deep learning-based methods have been developed utilizing ImageNet-based transfer learning for diagnosing hip and pelvic fractures. However, the ImageNet dataset contains natural RGB images which are different than PXR. In this study, we proposed a two-step transfer learning approach that improved the diagnosis of pelvic fractures in PXR images. The first step involved training a deep convolutional neural network (DCNN) using synthesized PXR images derived from 3D-CT by digitally reconstructed radiographs (DRR). In the second step, the classification layers of the DCNN were fine-tuned using acquired PXR images. The performance of the proposed method was compared with the conventional ImageNet-based transfer learning method. Experimental results demonstrated that the proposed DRR-based method, using 20 synthesized PXR images for each CT, achieved superior performance with the area under the receiver operating characteristic curves (AUROCs) of 0.9327 and 0.8014 for visible and invisible fractures, respectively. The ImageNet-based method yields AUROCs of 0.8908 and 0.7308 for visible and invisible fractures, respectively.
Journal Article
Genome-Wide Investigation Reveals Potential Therapeutic Targets in Shigella spp
by
Refat, Md. Rashedur Rahman
,
Khan, Md. Arif
,
Sohel, Md
in
Antibiotic resistance
,
Antibiotics
,
Antimicrobial agents
2024
Shigella stands as a major contributor to bacterial dysentery worldwide scale, particularly in developing countries with inadequate sanitation and hygiene. The emergence of multidrug-resistant strains exacerbates the challenge of treating Shigella infections, particularly in regions where access to healthcare and alternative antibiotics is limited. Therefore, investigations on how bacteria evade antibiotics and eventually develop resistance could open new avenues for research to develop novel therapeutics. The aim of this study was to analyze whole genome sequence (WGS) of human pathogenic Shigella spp. to elucidate the antibiotic resistance genes (ARGs) and their mechanism of resistance, gene-drug interactions, protein-protein interactions, and functional pathways to screen potential therapeutic candidate(s). We comprehensively analyzed 45 WGS of Shigella, including S. flexneri (n=17), S. dysenteriae (n=14), S. boydii (n=11), and S. sonnei (n=13), through different bioinformatics tools. Evolutionary phylogenetic analysis showed three distinct clades among the circulating strains of Shigella worldwide, with less genomic diversity. In this study, 2,146 ARGs were predicted in 45 genomes (average 47.69 ARGs/genome), of which only 91 ARGs were found to be shared across the genomes. Majority of these ARGs conferred their resistance through antibiotic efflux pump (51.0%) followed by antibiotic target alteration (23%) and antibiotic target replacement (18%). We identified 13 hub proteins, of which four proteins (e.g., tolC, acrR, mdtA, and gyrA) were detected as potential hub proteins to be associated with antibiotic efflux pump and target alteration mechanisms. These hub proteins were significantly (p<0.05) enriched in biological process, molecular function, and cellular components. Therefore, the finding of this study suggests that human pathogenic Shigella strains harbored a wide range of ARGs that confer resistance through antibiotic efflux pumps and antibiotic target modification mechanisms, which must be taken into account to devise and formulate treatment strategy against this pathogen. Moreover, the identified hub proteins could be exploited to design and develop novel therapeutics against MDR pathogens like Shigella.
Journal Article
Machine learning for predicting landslide risk of Rohingya refugee camp infrastructure
by
Rahman, Rashedur M.
,
Firoze, Adnan
,
Ahmed, Nahian
in
Algorithms
,
geospatial feature
,
Infrastructure
2020
Since the dawn of human civilization, forced migration scenarios have been witnessed in different regions and populations, and is still present in the twenty-first century. The current largest population of stateless refugees in the world, the Rohingya people, reside in the southeastern border region of Bangladesh. Due to rapid expansion of refugee camps and lack of suitable locations, a large proportion of the infrastructure are at risk of landslides. This study aims to use machine learning for predicting landslide risk of camp infrastructure using geospatial features. Four supervised classification algorithms have been employed viz., (i) Logistic Regression (LR), (ii) Multi-Layer Perceptron (MLP), (iii) Gradient Boosted Trees (GBT) and (iv) Random Forest (RF) and applied on preprocessing varied versions of features. Results show that RF achieves accuracy of 76.19% and AUC of 0.76 on un-scaled features which is higher than all other algorithms. The applications of the study reside in refugee management and landslide susceptibility mapping of Rohingya camps, which can both potentially save refugee lives and serve as a case study for global applications.
Journal Article
Water Level Forecasting Using Spatiotemporal Attention-Based Long Short-Term Memory Network
by
Hasan, Rubyat Tasnuva
,
Rahman, Rashedur M.
,
Dewan, Ashraf
in
Analysis
,
Bangladesh
,
Climate change
2022
Bangladesh is in the floodplains of the Ganges, Brahmaputra, and Meghna River delta, crisscrossed by an intricate web of rivers. Although the country is highly prone to flooding, the use of state-of-the-art deep learning models in predicting river water levels to aid flood forecasting is underexplored. Deep learning and attention-based models have shown high potential for accurately forecasting floods over space and time. The present study aims to develop a long short-term memory (LSTM) network and its attention-based architectures to predict flood water levels in the rivers of Bangladesh. The models developed in this study incorporated gauge-based water level data over 7 days for flood prediction at Dhaka and Sylhet stations. This study developed five models: artificial neural network (ANN), LSTM, spatial attention LSTM (SALSTM), temporal attention LSTM (TALSTM), and spatiotemporal attention LSTM (STALSTM). The multiple imputation by chained equations (MICE) method was applied to address missing data in the time series analysis. The results showed that the use of both spatial and temporal attention together increases the predictive performance of the LSTM model, which outperforms other attention-based LSTM models. The STALSTM-based flood forecasting system, developed in this study, could inform flood management plans to accurately predict floods in Bangladesh and elsewhere.
Journal Article
VM consolidation approach based on heuristics, fuzzy logic, and migration control
2016
To meet the increasing demand of computational power, at present IT service providers’ should choose cloud based services for its flexibility, reliability and scalability. More and more datacenters are being built to cater customers’ need. However, the datacenters consume large amounts of energy, and this draws negative attention. To address those issues, researchers propose energy efficient algorithms that can minimize energy consumption while keeping the quality of service (QoS) at a satisfactory level. Virtual Machine consolidation is one such technique to ensure energy-QoS balance. In this research, we explore fuzzy logic and heuristic based virtual machine consolidation approach to achieve energy-QoS balance. A Fuzzy VM selection method is proposed in this research. It selects VM from an overloaded host. Additionally, we incorporate migration control in Fuzzy VM selection method that will enhance the performance of the selection strategy. A new overload detection algorithm has also been proposed based on mean, median and standard deviation of utilization of VMs. We have used CloudSim toolkit to simulate our experiment and evaluate the performance of the proposed algorithm on real-world work load traces of Planet lab VMs. Simulation results demonstrate that the proposed method is most energy efficient compared to others.
Journal Article
Optimizing BERT for Bengali Emotion Classification: Evaluating Knowledge Distillation, Pruning, and Quantization
by
Rahman, Rashedur M.
,
Rahman, Md Hasibur
,
Ria, Zinnat Fowzia
in
Classification
,
Compression ratio
,
Digital data
2025
The rapid growth of digital data necessitates advanced natural language processing (NLP) models like BERT (Bidirectional Encoder Representations from Transformers), known for its superior performance in text classification. However, BERT’s size and computational demands limit its practicality, especially in resource-constrained settings. This research compresses the BERT base model for Bengali emotion classification through knowledge distillation (KD), pruning, and quantization techniques. Despite Bengali being the sixth most spoken language globally, NLP research in this area is limited. Our approach addresses this gap by creating an efficient BERT-based model for Bengali text. We have explored 20 combinations for KD, quantization, and pruning, resulting in improved speedup, fewer parameters, and reduced memory size. Our best results demonstrate significant improvements in both speed and efficiency. For instance, in the case of mBERT, we achieved a 3.87× speedup and 4× compression ratio with a combination of Distil + Prune + Quant that reduced parameters from 178 to 46 M, while the memory size decreased from 711 to 178 MB. These results offer scalable solutions for NLP tasks in various languages and advance the field of model compression, making these models suitable for real-world applications in resource-limited environments.
Journal Article
R&D and regional competitiveness: a study of global entrepreneurial firms
2023
We quantify, using data from the World Bank’s Enterprise Surveys and the World Economic Forum’s Global Competitiveness Index, the empirical relationship between global competitiveness and R&D investment activity as well as the independent relationship between global competitiveness and R&D investments across geographic regions of economic development. We also explore alternative measures of the effectiveness of R&D investments. Our findings suggest that R&D investments are a possible policy target variable in high-income regions for policy makers to consider for increasing firms’ global competitiveness.
Journal Article