Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
201
result(s) for
"Rapp, Joshua"
Sort by:
Microbes do not follow the elevational diversity patterns of plants and animals
by
Fierer, Noah
,
McCain, Christy M.
,
Zimmermann, Michael
in
16S rRNA genes
,
Altitude
,
Animal and plant ecology
2011
The elevational gradient in plant and animal diversity is one of the most widely documented patterns in ecology and, although no consensus explanation exists, many hypotheses have been proposed over the past century to explain these patterns. Historically, research on elevational diversity gradients has focused almost exclusively on plant and animal taxa. As a result, we do not know whether microbes exhibit elevational gradients in diversity that parallel those observed for macroscopic taxa. This represents a key knowledge gap in ecology, especially given the ubiquity, abundance, and functional importance of microbes. Here we show that, across a montane elevational gradient in eastern Peru, bacteria living in three distinct habitats (organic soil, mineral soil, and leaf surfaces) exhibit no significant elevational gradient in diversity (
r
2
< 0.17,
P
> 0.1 in all cases), in direct contrast to the significant diversity changes observed for plant and animal taxa across the same montane gradient (
r
2
> 0.75,
P
< 0.001 in all cases). This finding suggests that the biogeographical patterns exhibited by bacteria are fundamentally different from those of plants and animals, highlighting the need for the development of more inclusive concepts and theories in biogeography to explain these disparities.
Journal Article
Seeing around corners with edge-resolved transient imaging
by
Altmann, Yoann
,
Goyal, Vivek K.
,
Saunders, Charles
in
639/624/1107/510
,
639/766/930/2735
,
Algorithms
2020
Non-line-of-sight (NLOS) imaging is a rapidly growing field seeking to form images of objects outside the field of view, with potential applications in autonomous navigation, reconnaissance, and even medical imaging. The critical challenge of NLOS imaging is that diffuse reflections scatter light in all directions, resulting in weak signals and a loss of directional information. To address this problem, we propose a method for seeing around corners that derives angular resolution from vertical edges and longitudinal resolution from the temporal response to a pulsed light source. We introduce an acquisition strategy, scene response model, and reconstruction algorithm that enable the formation of 2.5-dimensional representations—a plan view plus heights—and a 180
∘
field of view for large-scale scenes. Our experiments demonstrate accurate reconstructions of hidden rooms up to 3 meters in each dimension despite a small scan aperture (1.5-centimeter radius) and only 45 measurement locations.
Non-line-of-sight imaging is typically limited by loss of directional information due to diffuse reflections scattering light in all directions. Here, the authors see around corners by using vertical edges and temporal response to pulsed light to obtain angular and longitudinal resolution, respectively.
Journal Article
Multiple Browsers Structure Tree Recruitment in Logged Temperate Forests
by
Faison, Edward K.
,
DeStefano, Stephen
,
Foster, David R.
in
Alces americanus
,
Analysis
,
Animal behavior
2016
Historical extirpations have resulted in depauperate large herbivore assemblages in many northern forests. In eastern North America, most forests are inhabited by a single wild ungulate species, white-tailed deer (Odocoileus virginianus), and relationships between deer densities and impacts on forest regeneration are correspondingly well documented. Recent recolonizations by moose (Alces americanus) in northeastern regions complicate established deer density thresholds and predictions of browsing impacts on forest dynamics because size and foraging differences between the two animals suggest a lack of functional redundancy. We asked to what extent low densities of deer + moose would structure forest communities differently from that of low densities of deer in recently logged patch cuts of Massachusetts, USA. In each site, a randomized block with three treatment levels of large herbivores-no-ungulates (full exclosure), deer (partial exclosure), and deer + moose (control) was established. After 6-7 years, deer + moose reduced stem densities and basal area by 2-3-fold, Prunus pensylvanica and Quercus spp. recruitment by 3-6 fold, and species richness by 1.7 species (19%). In contrast, in the partial exclosures, deer had non-significant effects on stem density, basal area, and species composition, but significantly reduced species richness by 2.5 species on average (28%). Deer browsing in the partial exclosure was more selective than deer + moose browsing together, perhaps contributing to the decline in species richness in the former treatment and the lack of additional decline in the latter. Moose used the control plots at roughly the same frequency as deer (as determined by remote camera traps), suggesting that the much larger moose was the dominant browser species in terms of animal biomass in these cuts. A lack of functional redundancy with respect to foraging behavior between sympatric large herbivores may explain combined browsing effects that were both large and complex.
Journal Article
A test of balanced fitness limitations theory: Pollen limitation in plants
by
Rosenheim, Jay A.
,
Schreiber, Sebastian J.
,
Rapp, Joshua M.
in
Animal reproduction
,
balanced limitations theory
,
Breeding success
2024
When reproductive success is determined by the relative availabilities of a series of essential, non‐substitutable resources, the theory of balanced fitness limitations predicts that the cost of harvesting a particular resource shapes the likelihood that a shortfall of that resource will constrain realized fitness. Plant reproduction through female function offers a special opportunity to test this theory; essential resources in this context include, first, the pollen received from pollinators or abiotic vectors that is used to fertilize ovules, and, second, the resources needed to provision the developing seeds and fruit. For many plants realized reproductive success through female function can be readily quantified in the field, and one key potential constraint on fitness, pollen limitation, can be assessed experimentally by manually supplementing pollen receipt. We assembled a comparative dataset of pollen limitation using only studies that supplement pollen to all flowers produced over the plant's reproductive lifespan. Pre‐ and post‐pollination costs were estimated using the weight of flowers and fruits and estimates of fruit set. Consistent with expectations, we find self‐incompatible plants make greater pre‐pollination investments and experience greater pollen limitation. However, contrary to theoretical expectations, when variation due to self‐compatibility is accounted for by including self‐compatibility in the statistical model as a covariate, we find no support for the prediction that plants that invest more heavily in pre‐pollination costs are subject to greater pollen limitation. Strong within‐species, between‐population variation in the expression of pollen limitation makes the quantification of mean pollen limitation difficult. We urge plant ecologists to conduct more studies of pollen limitation using whole‐plant pollen supplementation to produce a richer comparative dataset that would support a more robust test of the balanced limitations hypothesis. We assembled a comparative dataset of pollen limitation in plants to test a central prediction from the theory of balanced fitness limitations, namely that the cost of harvesting a particular resource shapes the likelihood that a shortfall of that resource will constrain realized fitness. We find no support for the prediction that plants that invest more heavily in pre‐pollination costs are subject to greater pollen limitation.
Journal Article
A model of spatial resolution uncertainty for Compton camera imaging
2023
Compton cameras use a pair of detectors to record the energy deposited during Compton scattering and photoabsorption of gamma ray photons. By inverting the forward model for these detection events, the 3D radioactive source distribution can be recovered computationally. However, existing methods of describing the forward model ignore the ambiguity in the Compton cone axis introduced by the detector pixel size. In this paper, we introduce approximations to the axis ambiguity that make the description of the source ambiguity computationally tractable and improve the accuracy of the detection forward model. Specifically, we model the pixel active areas as discs, so the intersection between all possible Compton cone axes and a plane parallel to the detectors is also a disc. Because of ambiguity in the Compton cone axis, the gamma source position is constrained to lie within a more complicated volume that we approximately bound by ellipses or hyperbolas at discrete depth slices. We perform simulations of single point gamma sources using the Geant4 software. Our forward model leads to improved source distribution recovery using both backprojection and iterative reconstruction methods, demonstrating that accurate localization can be performed from a smaller number of detected photons.
Journal Article
Bryophyte stable isotope composition, diversity and biomass define tropical montane cloud forest extent
2019
Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecosystems. Canopy access was used to analyse the distribution and vertical stratification of bryophyte epiphytes within tree crowns at nine forest sites across a 3400 m elevational gradient in Peru, from the Amazonian basin to the high Andes. The stable isotope compositions of bryophyte organic material ( 13 C/ 12 C and 18 O/ 16 O) are associated with surface water diffusive limitations and, along with C/N content, provide a generic index for the extent of cloud immersion. From lowland to cloud forest δ 13 C increased from −33‰ to −27‰, while δ 18 O increased from 16.3‰ to 18.0‰. Epiphytic bryophyte and associated canopy soil biomass in the cloud immersion zone was estimated at up to 45 t dry mass ha −1 , and overall water holding capacity was equivalent to a 20 mm precipitation event. The study emphasizes the importance of diverse bryophyte communities in sequestering carbon in threatened habitats, with stable isotope analysis allowing future elevational shifts in the cloud base associated with changes in climate to be tracked.
Journal Article
Sex allocation, pollen limitation and masting in whitebark pine
by
Crone, Elizabeth E.
,
Rapp, Joshua M.
,
McIntire, Eliot J. B.
in
Animal and plant ecology
,
Animal, plant and microbial ecology
,
Biological and medical sciences
2013
1. Masting, the synchronous and episodic production of seed crops, is thought to benefit plant reproductive success through positive density-dependent effects on pollination, dispersal and seed survival. Of these, only increased pollination efficiency in mast years can be a proximate mechanism for masting by synchronizing reproductive effort across individuals through pollen coupling. 2. Increased pollination efficiency requires synchronous investment in male and female function during mast years. Sex allocation theory, however, predicts a trade-off in investment between male and female reproductive allocation dependent on total resources invested in reproduction. 3. We describe patterns of sex allocation in Pinus albicaulis (whitebark pine), using data on pollen and seed cone counts over 5 years for 29 trees across 7 sites in Montana, U.S.A. 4. Whitebark pine seed cone maturation increased with site pollen cone production, indicating pollen limitation, and pollen and seed cone production were positively correlated across years. 5. Simulating mature seed cone production from these empirical relationships resulted in greater average mature seed cone production than alternative scenarios of (i) no synchrony between pollen cone production and pollen cone initiation, (ii) negative correlation (trade-off) between seed cone initiation and pollen cone production or (iii) no masting. 6. Synthesis. Our data support a role for pollination efficiency in both increasing long-term seed production and as a proximate mechanism for synchronizing masting in Pinus albicaulis. Increased pollination efficiency joins greater seed dispersal and survival in mast years seen in other studies, as an additional positive density-dependent benefit of masting. Positive density-dependent fitness benefits may therefore influence patterns of sex allocation in relation to total resources invested in reproduction. The pollen limitation found here combined with stand isolation and reduced tree density due to mortality from forest pests and other environmental Stressors may lead to reduced seed cone maturation and changes in masting patterns.
Journal Article
Intra- and interspecific tree growth across a long altitudinal gradient in the Peruvian Andes
2012
Tree growth response across environmental gradients is fundamental to understanding species distributional ecology and forest ecosystem ecology and to predict future ecosystem services. Cross-sectional patterns of ecosystem properties with respect to climatic gradients are often used to predict ecosystem responses to global change. Across sites in the tropics, primary productivity increases with temperature, suggesting that forest ecosystems will become more productive as temperature rises. However, this trend is confounded with a shift in species composition and so may not reflect the response of in situ forests to warming. In this study, we simultaneously studied tree diameter growth across the altitudinal ranges of species within a single genus across a geographically compact temperature gradient, to separate the direct effect of temperature on tree growth from that of species compositional turnover. Using a Bayesian state space modeling framework we combined data from repeated diameter censuses and dendrometer measurements from across a 1700-m altitudinal gradient collected over six years on over 2400 trees in
Weinmannia
, a dominant and widespread genus of cloud forest trees in the Andes. Within species, growth showed no consistent trend with altitude, but higher-elevation species had lower growth rates than lower-elevation species, suggesting that species turnover is largely responsible for the positive correlation between productivity and temperature in tropical forests. Our results may indicate a significant difference in how low- and high-latitude forests will respond to climate change, since temperate and boreal tree species are consistently observed to have a positive relationship between growth and temperature. If our results hold for other tropical species, a positive response in ecosystem productivity to increasing temperatures in the Andes will depend on the altitudinal migration of tree species. The rapid pace of climate change, and slow observed rates of migration, suggest a slow, or even initially negative response of ecosystem productivity to warming. Finally, this study shows how the observed scale of biological organization can affect conclusions drawn from studies of ecological phenomena across environmental gradients, and calls into question the common practice in tropical ecology of lumping species at higher taxonomic levels.
Journal Article
Ungulate browsers promote herbaceous layer diversity in logged temperate forests
2016
Ungulates are leading drivers of plant communities worldwide, with impacts linked to animal density, disturbance and vegetation structure, and site productivity. Many ecosystems have more than one ungulate species; however, few studies have specifically examined the combined effects of two or more species on plant communities. We examined the extent to which two ungulate browsers (moose [Alces americanus]) and white‐tailed deer [Odocoileus virginianus]) have additive (compounding) or compensatory (opposing) effects on herbaceous layer composition and diversity, 5–6 years after timber harvest in Massachusetts, USA. We established three combinations of ungulates using two types of fenced exclosures – none (full exclosure), deer (partial exclosure), and deer + moose (control) in six replicated blocks. Species composition diverged among browser treatments, and changes were generally additive. Plant assemblages characteristic of closed canopy forests were less abundant and assemblages characteristic of open/disturbed habitats were more abundant in deer + moose plots compared with ungulate excluded areas. Browsing by deer + moose resulted in greater herbaceous species richness at the plot scale (169 m2) and greater woody species richness at the subplot scale (1 m2) than ungulate exclusion and deer alone. Browsing by deer + moose resulted in strong changes to the composition, structure, and diversity of forest herbaceous layers, relative to areas free of ungulates and areas browed by white‐tailed deer alone. Our results provide evidence that moderate browsing in forest openings can promote both herbaceous and woody plant diversity. These results are consistent with the classic grazing‐species richness curve, but have rarely been documented in forests. Ungulates are leading drivers of plant communities worldwide, with impacts linked to animal density, disturbance and vegetation structure, and site productivity. We examined the effects of (1) white‐tailed deer and (2) moose + white‐tailed deer on the herbaceous layers of regenerating temperate forests 5–6 years after canopy removal by logging. Increased numbers of browser species (and browsing intensity) resulted in greater richness of herbs and shrubs and a greater abundance of plant species associated with open and disturbed habitats.
Journal Article
Climate change and maple syrup: Producer observations, perceptions, knowledge, and adaptation strategies
2023
Introduction: Climate change is impacting forest-based agricultural systems with implications for producer decision-making and livelihoods. This article presents a case study on the observations, perceptions, knowledge, and adaptation strategies of maple syrup producers in the United States to climate change.Methods: We carried out two semi-structured surveys with maple producers on: (1) climate change and its impacts on the maple system (n = 106 participants); and (2) responses to climate adaptation scenarios (n = 98 participants). Additionally, we carried out two focus groups and key informant interviews (n = 70+) to understand barriers and opportunities for climate adaptation. One of these focus groups and follow up key informant interviews was with tribally affiliated community members with the intention to acknowledge Indigenous Peoples’ voices, history, and relationships to the land.Results: Findings highlight that most of the surveyed producers (89%) have experienced the negative impacts of climate on maple syrup production. While 40% of participants feel concerned regarding the future of the maple system, 39% feel hopeful, with significant differences based on the age of the surveyed producers. The majority of producers have adapted their harvesting practices to climate effects. Producers shared knowledge of multiple adaptation strategies in response to climate scenarios comprised of: (1) stand management practices such as diversification of sap species tapped; (2) harvesting practices such as changing the type and number of taps; (3) sap processing practices focused on the integration of technology such as the use of an evaporator and reverse osmosis; and (4) marketing practices such as innovation of products and marketing different maple syrup characteristics. Responses shared by tribally affiliated producers highlight knowledge of multiple adaptation strategies that focus on long-term ecological management of forests rather than technological solutions.Discussion: Overall, findings emphasize the importance of cooperation and diversification at every level and dimension of the maple system for its long-term resilience.
Journal Article