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result(s) for
"Razzaq, Rehan"
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A glutamate concentration‐biased allosteric modulator potentiates NMDA‐induced ion influx in neurons
by
Bledsoe, Douglas N.
,
Johnston, Tullia V.
,
Mehrkens, Brittney
in
Allosteric Regulation
,
Animals
,
anti‐NMDA receptor encephalopathy
2021
Precisely controlled synaptic glutamate concentration is essential for the normal function of the N‐methyl D‐aspartate (NMDA) receptors. Atypical fluctuations in synaptic glutamate homeostasis lead to aberrant NMDA receptor activity that results in the pathogenesis of neurological and psychiatric disorders. Therefore, glutamate concentration‐dependent NMDA receptor modulators would be clinically useful agents with fewer on‐target adverse effects. In the present study, we have characterized a novel compound (CNS4) that potentiates NMDA receptor currents based on glutamate concentration. This compound alters glutamate potency and exhibits no voltage‐dependent effect. Patch‐clamp electrophysiology recordings confirmed agonist concentration‐dependent changes in maximum inducible currents. Dynamic Ca2+ and Na+ imaging assays using rat brain cortical, striatal and cerebellar neurons revealed CNS4 potentiated ion influx through native NMDA receptor activity. Overall, CNS4 is novel in chemical structure, mechanism of action and agonist concentration‐biased allosteric modulatory effect. This compound or its future analogs will serve as useful candidates to develop drug‐like compounds for the treatment of treatment‐resistant schizophrenia and major depression disorders associated with hypoglutamatergic neurotransmission. Novel NMDA receptor modulator selectively potentiates whole‐cell current response based on glutamate concentration.
Journal Article
Burden of Portal Hypertension Complications Is Greater in Liver Transplant Wait-Listed Registrants with End-Stage Liver Disease and Type 2 Diabetes
by
Siddiqui, Mohammad Shadab
,
Khan, Hiba
,
Nguyen, Madison
in
Ascites
,
Clinical outcomes
,
Diabetes
2024
Background and AimsImpact of type 2 diabetes mellitus (T2DM) in patients with end-stage liver disease (ESLD) awaiting liver transplantation (LT) remains poorly defined. The objective of the present study is to evaluate the relationship between T2DM and clinical outcomes among patients with LT waitlist registrants. We hypothesize that the presence of T2DM will be associated with worse clinical outcomes.Methods593 patients adult (age 18 years or older) who were registered for LT between 1/2010 and 1/2017 were included in this retrospective analysis. The impact of T2DM on liver-associated clinical events (LACE), survival, hospitalizations, need for renal replacement therapy, and likelihood of receiving LT were evaluated over a 12-month period. LACE was defined as variceal hemorrhage, hepatic encephalopathy, and ascites. Kaplan–Meier and Cox regression analysis were used to determine the association between T2DM and clinical outcomes.ResultsThe baseline prevalence of T2DM was 32% (n = 191) and patients with T2DM were more likely to have esophageal varices (61% vs. 47%, p = 0.002) and history of variceal hemorrhage (23% vs. 16%, p = 0.03). The presence of T2DM was associated with increased risk of incident ascites (HR 1.91, 95% CI 1.11, 3.28, p = 0.019). Patients with T2DM were more likely to require hospitalizations (56% vs. 49%, p = 0.06), hospitalized with portal hypertension-related complications (22% vs. 14%; p = 0.026), and require renal replacement therapy during their hospitalization. Patients with T2DM were less likely to receive a LT (37% vs. 45%; p = 0.03). Regarding MELD labs, patients with T2DM had significantly lower bilirubin at each follow-up; however, no differences in INR and creatinine were noted.ConclusionPatients with T2DM are at increased risk of clinical outcomes. This risk is not captured in MELD score, which may potentially negatively affect their likelihood of receiving LT.
Journal Article
Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following stem cell transplantation
2017
Quantitative relationship between the magnitude of variation in minor histocompatibility antigens (mHA) and graft versus host disease (GVHD) pathophysiology in stem cell transplant (SCT) donor-recipient pairs (DRP) is not established. In order to elucidate this relationship, whole exome sequencing (WES) was performed on 27 HLA matched related (MRD), & 50 unrelated donors (URD), to identify nonsynonymous single nucleotide polymorphisms (SNPs). An average 2,463 SNPs were identified in MRD, and 4,287 in URD DRP (p<0.01); resulting peptide antigens that may be presented on HLA class I molecules in each DRP were derived in silico (NetMHCpan ver2.0) and the tissue expression of proteins these were derived from determined (GTex). MRD DRP had an average 3,670 HLA-binding-alloreactive peptides, putative mHA (pmHA) with an IC50 of <500 nM, and URD, had 5,386 (p<0.01). To simulate an alloreactive donor cytotoxic T cell response, the array of pmHA in each patient was considered as an operator matrix modifying a hypothetical cytotoxic T cell clonal vector matrix; each responding T cell clone's proliferation was determined by the logistic equation of growth, accounting for HLA binding affinity and tissue expression of each alloreactive peptide. The resulting simulated organ-specific alloreactive T cell clonal growth revealed marked variability, with the T cell count differences spanning orders of magnitude between different DRP. Despite an estimated, uniform set of constants used in the model for all DRP, and a heterogeneously treated group of patients, higher total and organ-specific T cell counts were associated with cumulative incidence of moderate to severe GVHD in recipients. In conclusion, exome wide sequence differences and the variable alloreactive peptide binding to HLA in each DRP yields a large range of possible alloreactive donor T cell responses. Our findings also help understand the apparent randomness observed in the development of alloimmune responses.
Journal Article
Development of Consumer Perception Index for assessing greywater reuse potential in arid environments
by
Haider, Husnain
,
AlSaleem, Saleem Saleh
,
Ghumman, Abdul Razzaq
in
Arid environment
,
Arid environments
,
Arid zones
2018
Arab countries are primarily situated in arid environments and face serious water scarcity challenges due to growing populations, urbanization, and climate change impacts. Reusing greywater, if adequately treated at the point of generation, poses less human health risk as compared to blackwater reuse. Consumers have several reasons for being unwilling to reuse greywater, including potential health risk, religious and cultural concerns, and feeling uncomfortable. There are several possible reuse applications of treated greywater, such as watering plants, floor cleaning, landscaping, toilet flushing, etc. Therefore, it is important to assess consumer perceptions about greywater reuse before its implementation in any region. In this research, a framework based on greywater reuse indicators (GWRI) was developed to assess consumer perceptions before and after introducing low-cost treatment (LCT). Later the framework was implemented for Muscat, Oman. A questionnaire survey was carried out with 110 households located in diverse socioeconomic settings to collect data about general demographics, existing water uses, water sources, greywater applications (after LCT), and in-house plumbing systems. Seven key GWRI were estimated and aggregated to develop an overall consumer perception index (CPI). The study results revealed that CPI improved significantly from ‘very low’ to ‘high’ after introducing LCT. However, governments should provide financial assistance to consumers for improving in-house plumbing systems, based on detailed investigations. The study revealed that the CPI can be applied across the globe and can save time and effort for municipal managers, engineers, and policy makers by providing information that will enable effective decision-making.
Journal Article
Performance Evaluation of Compost of Windrow Turner Machine Using Agriculture Waste Materials
2024
Composting is the decomposition of organic matter in an aerobic environment. The windrow turner machine is used to turn the compost piles for efficient composting. It effectively addresses important issues such as managing crop leftovers and disposing of animal waste. This paper evaluates a comparison between mechanized (pile 1) and conventional (pile 2) compost-turning processes and the need for windrow turner machines to manage waste effectively and turn it into nutrient-dense material. This approach not only delivers a practical solution, it also points out the potential for a significant increase in soil fertility and agricultural sustainability. Five samples were taken from each pile at 10 feet intervals for chemical analysis. A total 13,768 kg of the compost yield was collected from pile one and 11,512 kg from pile 2. The study’s findings show that the machine turned a greater cation exchange capacity (CEC) value than the compost manually turned. Pile 1 was turned using a compost windrow turner machine, and pile 2 was turned manually. The CEC values in pile 1 varied from 21.23 meq/100 g dry weight to 68.87 meq/100 g dry weight after eight weeks, while the CEC values in pile 2 increased from 21.23 meq/100 g dry weight to 33.28 meq/100 g dry weight. The value of electrical conductivity (EC) in pile 1 increased from 1.98 ds/m to 11.34 ds/m, whereas in pile 2 it climbed from 1.98 ds/m to 7.86 ds/m after 8 weeks. The C/N ratio of pile 1 dropped to approximately 15 and the concentration of micronutrients increased during the composting process, which indicate mature composted material. The outcomes of this research contribute that mechanical composting emerges as a highly suitable method for efficiently managing the composting process, ensuring uniform decomposition, enhanced aeration, and the production of high-quality compost.
Journal Article
The Effects of Water Friction Loss Calculation on the Thermal Field of the Canned Motor
by
Razzaq, Samia
,
Waleed Adnan, Ahmad
,
Lu, Yiping
in
Coils (windings)
,
Computational fluid dynamics
,
Cooling
2019
The thermal behavior of a canned motor also depends on the losses and the cooling capability, and these losses cause an increase in the temperature of the stator winding. This paper focuses on the modeling and simulation of the thermal fields of the large canned induction motor by different calculation methods of water friction loss. The values of water friction losses are set as heat sources in the corresponding clearance of water at different positions along the duct and are calculated by the analytical method, loss separation test method, and by assuming the values that may be larger than the experimental results and at zero. Based on Finite volume method (FVM), 3D turbulent flow and heat transfer equations of the canned motor are solve numerically to obtain the temperature distributions of different parts of the motor. The analysis results of water friction loss are compared with the measurements, obtained from the total losses using the loss separation method. The results show that the magnitude of water friction loss within various parts of the motor does not affect the position of peak temperature and the tendency of the temperature distribution of windings. This paper is highly significant for the design of cooling structures of electrical machines.
Journal Article
Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides: Understanding Randomness in Clinical Outcomes Following Stem Cell Transplantation
by
Scalora, Allison
,
Sampson, Juliana
,
Toor, Amir
in
Antigens
,
Cytotoxicity
,
Graft-versus-host reaction
2017
The quantitative relationship between the magnitude of variation in minor histocompatibility antigens (mHA) and graft versus host disease (GVHD) pathophysiology in stem cell transplant (SCT) donor-recipient pairs (DRP) is not established. In order to elucidate this relationship, whole exome sequencing (WES) was performed on 27 HLA matched related (MRD), & 50 unrelated donors (URD), to identify nonsynonymous single nucleotide polymorphisms (SNPs). An average 2,463 SNPs were identified in MRD, and 4,287 in URD DRP (p<0.01); resulting peptide antigens that may be presented on HLA class I molecules in each DRP were derived in silico (NetMHCpan ver2.0) and the tissue expression of proteins these were derived from determined (GTex). MRD DRP had an average 3,670 HLA-binding-alloreactive peptides, putative mHA (pmHA) with an IC50 of <500 nM, and URD, had 5,386 (p<0.01). To simulate an alloreactive donor cytotoxic T cell response, the array of pmHA in each patient was considered as an operator matrix modifying a hypothetical cytotoxic T cell clonal vector matrix; responding T cell clonal proliferation was determined by the logistic equation of growth, accounting for HLA binding affinity and tissue expression of each alloreactive peptide. The resulting simulated organ-specific alloreactive T cell clonal growth revealed marked variability, with the T cell count differences spanning orders of magnitude between different DRP. Despite an estimated, uniform set of constants used in the model for all DRP, and a heterogeneously treated group of patients higher total and organ-specific T cell counts were associated with cumulative incidence of GVHD in recipients in Cox proportional hazard models. In conclusion, exome wide sequence differences and the variable alloreactive peptide binding to HLA in each DRP yields a large range of possible alloreactive donor T cell responses. Our findings also help understand the apparent randomness observed in the development of alloimmune responses.