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186 result(s) for "Read, Justin"
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Observational constraints on stellar feedback in dwarf galaxies
Feedback to the interstellar medium from ionizing radiation, stellar winds and supernovae is central to regulating star formation in galaxies. Owing to their low mass (<10 9 solar masses), dwarf galaxies are particularly susceptible to such processes, making them ideal sites for studying the detailed physics of feedback. In this Perspective, we summarize the latest observational evidence for feedback from star-forming regions and how this feedback drives the formation of ‘superbubbles’ and galaxy-wide winds. We discuss the important role of external ionizing radiation—reionization—for the smallest galaxies, and the observational evidence that this feedback directly impacts galaxy properties such as their star formation histories, metal contents, colours, sizes, morphologies and even their inner dark matter densities. We conclude with a look to the future, summarizing the key questions that remain to be answered and listing some of the outstanding challenges for galaxy formation theories. This Perspective summarizes the latest observational evidence for star formation feedback and the important role of external ionizing radiation for the smallest galaxies, showing how this feedback directly impacts their properties, including their dark matter distribution.
Identification of a BACE1 Binding Peptide Candidate for the Prevention of Amyloid Beta in Alzheimer’s Disease
Amyloid plaques, generated during the progression of Alzheimer's disease, cause major neurological deficits due to substantial cell toxicity and death. The underlying cause of plaque generation stems from cleavage of the amyloid precursor protein (APP) by β-secretase (BACE1). A resulting amyloid-β (Aβ) fragment forms aggregates to produce the main constituent of a plaque. Phage display and biopanning techniques were used to identify a 12-mer peptide that had a natural affinity for the BACE1 enzyme. The peptide was translated from phage DNA and synthetically produced. The peptide, at concentrations of 1nM, 10nM and 100nM, was used to confirm binding by direct assay. Non-specific binding to BACE2, renin and cathepsin D was tested by direct binding assay. A BACE1 activity assay was used to determine the peptide effect on cleavage of an APP substrate. Treatment of SY5Y cells with the peptide was used to determine toxicity and prevention of Aβ40 and Aβ42 production. After identification and synthetic production, the peptide exhibited a strong affinity for BACE1 at nanomolar concentrations in the direct assay. In case of non-specific binding to homologous BACE2, renin and cathepsin D, the peptide showed minor binding but was nullified when in solution with BACE1. The peptide addition to a BACE1 activity assay was able to significantly reduce the amount of substrate cleavage. SY5Y cells, when treated with the peptide, did not show any detrimental morphological changes while being able to reduce the production of natural Aβ40 and Aβ42. Even under stressed conditions (H O treatment) where the Aβ production was higher, the peptide was still able to significantly reduce the effect of BACE1 while not effecting cell viability. The identified peptide exhibited strong binding to BACE1 in vitro and was able to reduce production of Aβ, suggesting a favourable BACE1 inhibitor for future refining and characterisation.
A low pre-infall mass for the Carina dwarf galaxy from disequilibrium modelling
Dark matter-only simulations of galaxy formation predict many more subhalos around a Milky Way-like galaxy than the number of observed satellites. Proposed solutions require the satellites to inhabit dark matter halos with masses 10 9 –10 10 Msun at the time they fell into the Milky Way. Here we use a modelling approach, independent of cosmological simulations, to obtain a pre-infall mass of Msun for one of the Milky Way’s satellites: Carina. This determination of a low halo mass for Carina can be accommodated within the standard model only if galaxy formation becomes stochastic in halos below ∼10 10 Msun. Otherwise Carina, the eighth most luminous Milky Way dwarf, would be expected to inhabit a significantly more massive halo. The implication of this is that a population of ‘dark dwarfs’ should orbit the Milky Way: halos devoid of stars and yet more massive than many of their visible counterparts. The cold dark matter paradigm predicts that Milky Way-like galaxies should have dwarf galaxies with dark matter halos as satellites. Ural et al. present a new model, independent of cosmological simulations, that constrains the pre-infall mass of the Milky Way satellite Carina to a value lower than expected.
A CCG expansion in ABCD3 causes oculopharyngodistal myopathy in individuals of European ancestry
Oculopharyngodistal myopathy (OPDM) is an inherited myopathy manifesting with ptosis, dysphagia and distal weakness. Pathologically it is characterised by rimmed vacuoles and intranuclear inclusions on muscle biopsy. In recent years CGG • CCG repeat expansion in four different genes were identified in OPDM individuals in Asian populations. None of these have been found in affected individuals of non-Asian ancestry. In this study we describe the identification of CCG expansions in ABCD3 , ranging from 118 to 694 repeats, in 35 affected individuals across eight unrelated OPDM families of European ancestry. ABCD3 transcript appears upregulated in fibroblasts and skeletal muscle from OPDM individuals, suggesting a potential role of over-expression of CCG repeat containing ABCD3 transcript in progressive skeletal muscle degeneration. The study provides further evidence of the role of non-coding repeat expansions in unsolved neuromuscular diseases and strengthens the association between the CGG • CCG repeat motif and a specific pattern of muscle weakness. A significant proportion of individuals with inherited neuromuscular disease do not receive a genetic diagnosis. Here, the authors establish CCG expansions in the 5’ untranslated region of ABCD3 as a cause of oculopharyngodistal myopathy (OPDM) in individuals of European ancestry and identify increased expression of expansion-containing ABCD3 transcripts as a possible disease mechanism underlying muscle degeneration.
Novel Insights into Changes in Gene Expression within the Hypothalamus in Two Asthma Mouse Models: A Transcriptomic Lung–Brain Axis Study
Patients with asthma experience elevated rates of mental illness. However, the molecular links underlying such lung–brain crosstalk remain ambiguous. Hypothalamic dysfunction is observed in many psychiatric disorders, particularly those with an inflammatory component due to many hypothalamic regions being unprotected by the blood–brain barrier. To gain a better insight into such neuropsychiatric sequelae, this study investigated gene expression differences in the hypothalamus following lung inflammation (asthma) induction in mice, using RNA transcriptome profiling. BALB/c mice were challenged with either bacterial lipopolysaccharide (LPS, E. coli) or ovalbumin (OVA) allergens or saline control (n = 7 per group), and lung inflammation was confirmed via histological examination of postmortem lung tissue. The majority of the hypothalamus was micro-dissected, and total RNA was extracted for sequencing. Differential expression analysis identified 31 statistically significant single genes (false discovery rate FDR5%) altered in expression following LPS exposure compared to controls; however, none were significantly changed following OVA treatment, suggesting a milder hypothalamic response. When gene sets were examined, 48 were upregulated and 8 were downregulated in both asthma groups relative to controls. REACTOME enrichment analysis suggests these gene sets are involved in signal transduction metabolism, immune response and neuroplasticity. Interestingly, we identified five altered gene sets directly associated with neurotransmitter signaling. Intriguingly, many of these altered gene sets can influence mental health and or/neuroinflammation in humans. These findings help characterize the links between asthma-induced lung inflammation and the brain and may assist in identifying relevant pathways and therapeutic targets for future intervention.
Characterization of microglial transcriptomes in the brain and spinal cord of mice in early and late experimental autoimmune encephalomyelitis using a RiboTag strategy
Microglia play an important role in the pathogenesis of multiple sclerosis and the mouse model of MS, experimental autoimmune encephalomyelitis (EAE). To more fully understand the role of microglia in EAE we characterized microglial transcriptomes before the onset of motor symptoms (pre-onset) and during symptomatic EAE. We compared the transcriptome in brain, where behavioral changes are initiated, and spinal cord, where damage is revealed as motor and sensory deficits. We used a RiboTag strategy to characterize ribosome-bound mRNA only in microglia without incurring possible transcriptional changes after cell isolation. Brain and spinal cord samples clustered separately at both stages of EAE, indicating regional heterogeneity. Differences in gene expression were observed in the brain and spinal cord of pre-onset and symptomatic animals with most profound effects in the spinal cord of symptomatic animals. Canonical pathway analysis revealed changes in neuroinflammatory pathways, immune functions and enhanced cell division in both pre-onset and symptomatic brain and spinal cord. We also observed a continuum of many pathways at pre-onset stage that continue into the symptomatic stage of EAE. Our results provide additional evidence of regional and temporal heterogeneity in microglial gene expression patterns that may help in understanding mechanisms underlying various symptomology in MS.
The Dark Matter Density Profiles of Antlia B
We use spectroscopic observations of Antlia B, a distant ( d ∼ 1.35 Mpc) faint dwarf galaxy ( M V = −9.7, M * =10 5 M ⊙ ), from MUSE-Faint, to explore alternative dark matter (DM) models to Λ CDM, which are one possible explanation for the small-scale problems in the standard model. We measure line-of-sight velocities of 127 stars, and combine these with GravSphere, a Jeans modelling code, to place constraints on DM models and derive the first DM density profiles for this object. We present constraints on the nature of self-interacting DM, in which DM particles can interact with one another in the form of annihilation (we find a core radius of r c ≲ 69 pc) and on scalar field DM, comprised of ultralight bosons that form a Bose-Einstein Condensate (we find a characteristic length scale of the self-interaction of R TF ≲ 180 pc). These results suggest that we can rule out these models as an explanation for the cores in the larger dwarf galaxies in the Local Group.
Differential Level of RXFP3 Expression in Dopaminergic Neurons Within the Arcuate Nucleus, Dorsomedial Hypothalamus and Ventral Tegmental Area of RXFP3-Cre/tdTomato Mice
RXFP3 (relaxin-family peptide 3 receptor) is the cognate G-protein-coupled receptor for the neuropeptide, relaxin-3. RXFP3 is expressed widely throughout the brain, including the hypothalamus, where it has been shown to modulate feeding behavior and neuroendocrine activity in rodents. In order to better characterize its potential mechanisms of action, this study determined whether RXFP3 is expressed by dopaminergic neurons within the arcuate nucleus (ARC) and dorsomedial hypothalamus (DMH), in addition to the ventral tegmental area (VTA). Neurons that express RXFP3 were visualized in coronal brain sections from RXFP3-Cre/tdTomato mice, which express the tdTomato fluorophore within RXFP3-positive cells, and dopaminergic neurons in these areas were visualized by simultaneous immunohistochemical detection of tyrosine hydroxylase-immunoreactivity (TH-IR). Approximately 20% of ARC neurons containing TH-IR coexpressed tdTomato fluorescence, suggesting that RXFP3 can influence the dopamine pathway from the ARC to the pituitary gland that controls prolactin release. The ability of prolactin to reduce leptin sensitivity and increase food consumption therefore represents a potential mechanism by which RXFP3 activation influences feeding. A similar proportion of DMH neurons containing TH-IR expressed RXFP3-related tdTomato fluorescence, consistent with a possible RXFP3-mediated regulation of stress and neuroendocrine circuits. In contrast, RXFP3 was barely detected within the VTA. TdTomato signal was absent from the ARC and DMH in sections from Rosa26-tdTomato mice, suggesting that the cells identified in RXFP3-Cre/tdTomato mice expressed authentic RXFP3-related tdTomato fluorescence. Together, these findings identify potential hypothalamic mechanisms through which RXFP3 influences neuroendocrine control of metabolism, and further highlight the therapeutic potential of targeting RXFP3 in feeding-related disorders.
Perceptions and Misconceptions about the Undergraduate Laboratory from Chemistry, Physics and Biology Academics
The undergraduate laboratory occupies a large fraction of science students' time. Over 3000 students were asked to rate their laboratory learning experience using 12 metrics. 362 academics were asked to predict which of these 12 aspects of the student experience would correlate with the overall laboratory learning experience. Responses from academics in biology, chemistry and physics departments, and from the USA and Australia, are statistically the same. However, the correlation between these staff predictions and student results is poor. The student results are consistent with extant educational research, but it appears that these findings are not reaching those who are responsible for developing undergraduate laboratory courses. There is a great need for educational research to be made more accessible for academics who are trained in scientific, but not in educational research. [Author abstract]