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"Ren, Gang"
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Global potential distribution prediction of Xanthium italicum based on Maxent model
2021
Alien invasive plants pose a threat to global biodiversity and the cost of control continues to rise. Early detection and prediction of potential risk areas are essential to minimize ecological and socio-economic costs. In this study, the Maxent model was used to predict current and future climatic conditions to estimate the potential global distribution of the invasive plant
Xanthium italicum
. The model consists of 366 occurrence records (10 repeats, 75% for calibration and 25% for verification) and 10 climate prediction variables. According to the model forecast, the distribution of
X. italicum
was expected to shrink in future climate scenarios with human intervention, which may be mainly caused by the rise in global average annual temperature. The ROC curve showed that the AUC values of the training set and the test set are 0.965 and 0.906, respectively, indicating that the prediction result of this model was excellent. The contribution rates of annual mean temperature, monthly mean diurnal temperature range, standard deviation of temperature seasonal change and annual average precipitation to the geographical distribution of
X. italicum
were 65.3%, 11.2%, 9.0%, and 7.7%, respectively, and the total contribution rate was 93.2%. These four variables are the dominant environmental factors affecting the potential distribution of
X. italicum
, and the influence of temperature is greater than that of precipitation. Through our study on the potential distribution prediction of
X. italicum
under the future climatic conditions, it has contribution for all countries to strengthen its monitoring, prevention and control, including early warning.
Journal Article
Satellite-based entanglement distribution over 1200 kilometers
2017
Long-distance entanglement distribution is essential for both foundational tests of quantum physics and scalable quantum networks. Owing to channel loss, however, the previously achieved distance was limited to ~100 kilometers. Here we demonstrate satellite-based distribution of entangled photon pairs to two locations separated by 1203 kilometers on Earth, through two satellite-to-ground downlinks with a summed length varying from 1600 to 2400 kilometers. We observed a survival of two-photon entanglement and a violation of Bell inequality by 2.37 ± 0.09 under strict Einstein locality conditions. The obtained effective link efficiency is orders of magnitude higher than that of the direct bidirectional transmission of the two photons through telecommunication fibers.
Journal Article
Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot
2019
The Hengduan Mountains (HDM) biodiversity hotspot exhibits exceptional alpine plant diversity. Here, we investigate factors driving intraspecific divergence within a HDM alpine species
Salix brachista
(Cushion willow), a common component of subnival assemblages. We produce a high
-
quality genome assembly for this species and characterize its genetic diversity, population structure and pattern of evolution by resequencing individuals collected across its distribution. We detect population divergence that has been shaped by a landscape of isolated sky island-like habitats displaying strong environmental heterogeneity across elevational gradients, combined with population size fluctuations that have occurred since approximately the late Miocene. These factors are likely important drivers of intraspecific divergence within Cushion willow and possibly other alpine plants with a similar distribution. Since intraspecific divergence is often the first step toward speciation, the same factors can be important contributors to the high alpine species diversity in the HDM.
Exceptional alpine plant diversity exists in the Hengduan Mountains. Here, through genome assembly and population genomics studies, the authors find notable intraspecific divergence among Cushion willow populations isolated by the sky island-like habitats and consider it contributes to speciation and biodiversity.
Journal Article
Role of abscisic acid in strigolactone-induced salt stress tolerance in arbuscular mycorrhizal Sesbania cannabina seedlings
by
Xie, Zhi-Hong
,
Kong, Cun-Cui
,
Ren, Cheng-Gang
in
Abscisic acid
,
Abscisic Acid - physiology
,
Abscisic acid ·arbuscular mycorrhizal
2018
Background
Strigolactones (SLs) are considered to be a novel class of phytohormone involved in plant defense responses. Currently, their relationships with other plant hormones, such as abscisic acid (ABA), during responses to salinity stress are largely unknown.
Results
In this study, the relationship between SL and ABA during the induction of H
2
O
2
– mediated tolerance to salt stress were studied in arbuscular mycorrhizal (AM)
Sesbania cannabina
seedlings. The SL levels increased after ABA treatments and decreased when ABA biosynthesis was inhibited in AM plants. Additionally, the expression levels of SL-biosynthesis genes in AM plants increased following treatments with exogenous ABA and H
2
O
2
. Furthermore, ABA-induced SL production was blocked by a pre-treatment with dimethylthiourea, which scavenges H
2
O
2
. In contrast, ABA production was unaffected by dimethylthiourea. Abscisic acid induced only partial and transient increases in the salt tolerance of TIS108 (a SL synthesis inhibitor) treated AM plants, whereas SL induced considerable and prolonged increases in salt tolerance after a pre-treatment with tungstate.
Conclusions
These results strongly suggest that ABA is regulating the induction of salt tolerance by SL in AM
S. cannabina
seedlings.
Journal Article
Evolution of Sex-linked Genes and the Role of Pericentromeric Regions in Sex Chromosomes: Insights from Diploid Willows
2024
Abstract
The evolution of sex chromosomes can involve recombination suppression sometimes involving structural changes, such as inversions, allowing subsequent rearrangements, including inversions and gene transpositions. In the two major genus Salix clades, Salix and Vetrix, almost all species are dioecious, and sex-linked regions have evolved on chromosome 7 and 15, with either male or female heterogamety. We used chromosome conformation capture (Hi-C) and PacBio HiFi (high-fidelity) reads to assemble chromosome-level, gap-free X and Y chromosomes from both clades, S. triandra (15XY system), a basal species in the Vetrix clade, and the Salix clade species S. mesnyi (7XY system). Combining these with other available genome assemblies, we found inversions within the sex-linked regions, which are likely to be pericentromeric and probably recombined rarely in the ancestral species, before sex-linkage evolved. The Y-linked regions in all 15XY and 7XY species include partial duplicates containing exon 1 of an ARR17-like gene similar to male-determining factors in other Salicaceae species. We also found duplicates of a Y-specific gene, which we named MSF. The derived Salix clade 7XY chromosome systems appear to have evolved when these two genes transposed from the 15Y to the 7Y. Additionally, the 7Y chromosomes in S. dunnii and S. chaenomeloides probably evolved from the ancestral 7X of the Salix clade, involving a similar transposition, and loss of the ancestral 7Y. We suggest that pericentromeric regions that recombine infrequently may facilitate the evolution of sex linkage.
Journal Article
Cascading failure analysis and robustness optimization of metro networks based on coupled map lattices: a case study of Nanjing, China
2021
Cascading failure in metro networks is a dynamic chain process induced by the interaction of passenger flow and network topology. In this paper, a bi-directional coupled map lattice model is proposed to study the cascading failure of metro networks. The model considers the two-way traffic problem, and the results are closer to those of actual metro networks than the previous one-way coupling models. A η-based flow redistribution method is proposed, and different passenger flow redistribution strategies after station failure can be achieved by changing the flow redistribution coefficient η from 0 to 1. Moreover, the robustness of metro networks can be optimized by searching for the optimal η that can maximize the critical perturbation leading to global network failure. We study the actual case of Nanjing metro. The analysis results show that the network is more vulnerable to intentional attacks than to random failures, and global network failure is triggered more easily on the largest strength station than on the stations with the largest betweenness and largest degree. The influence of coupling strengths on the critical perturbation is also investigated. The results show that larger coupling strengths correspond to smaller critical perturbations, but a change in the coupling strengths has a small impact on the optimal η. Under the given traffic data, the optimal η for Nanjing metro is approximately in the range (0.3, 0.4). This study provides a reference for developing strategies for dynamic safety evaluation and emergency management of passenger flow in metro networks.
Journal Article
Chromosome-level genome assembly of a parent species of widely cultivated azaleas
2020
Azaleas (Ericaceae) comprise one of the most diverse ornamental plants, renowned for their cultural and economic importance. We present a chromosome-scale genome assembly for Rhododendron simsii, the primary ancestor of azalea cultivars. Genome analyses unveil the remnants of an ancient whole-genome duplication preceding the radiation of most Ericaceae, likely contributing to the genomic architecture of flowering time. Small-scale gene duplications contribute to the expansion of gene families involved in azalea pigment biosynthesis. We reconstruct entire metabolic pathways for anthocyanins and carotenoids and their potential regulatory networks by detailed analysis of time-ordered gene co-expression networks. MYB, bHLH, and WD40 transcription factors may collectively regulate anthocyanin accumulation in R. simsii, particularly at the initial stages of flower coloration, and with WRKY transcription factors controlling progressive flower coloring at later stages. This work provides a cornerstone for understanding the underlying genetics governing flower timing and coloration and could accelerate selective breeding in azalea.
Journal Article
Resilience-based optimization model for emergency bus bridging and dispatching in response to metro operational disruptions
2023
Bus-bridging evacuation services can significantly enhance metro resilience during operational disruptions. A resilience-based optimization model was proposed to generate a bus bridging and dispatching plan. The objective of the model is to maximize the resilience index of evacuated passengers while meeting pre-established restrictions on operational indicators and resources. The proposed approach consists of three steps: representing an integrated network based on a hyper-network, generating candidate bus-bridging routes using the K-shortest paths algorithm, and solving the optimization model using a genetic algorithm to determine the optimal vehicle allocation among the candidate routes. The Nanjing metro network was used to demonstrate the proposed model. The results show that the average waiting time is the main reason for travel delays, especially in short-distance travel. Furthermore, the cycling strategy is beneficial for reducing the average travel delay and improving evacuation efficiency with limited vehicles. In particular, when resources are very limited, the vehicle cycling strategy may have significant advantages over fixed vehicles for servicing fixed lines. The proposed model could be widely used in emergency response to quickly and efficiently evacuate passengers.
Journal Article
Association of low-carbohydrate-diet score and cognitive performance in older adults: National Health and Nutrition Examination Survey (NHANES)
2022
Background
To investigate the association between low-carbohydrate-diet (LCD) score and cognitive performance based on a nationally representative sample aged ≥ 60 years from National Health and Nutrition Examination Survey (NHANES) database.
Methods
This cross-sectional study included 2,537 eligible older adults from the NHANES database 2011–2014. The Consortium to Establish a Registry for Alzheimer’s Disease (CERAD) word learning subtest, Animal Fluency Test (AFT), and Digit Symbol Substitution Test (DSST) were used to assess the cognitive performance. All participants were categorized into the low and normal cognitive performance groups. The univariate and multivariate logistic regression analyses were utilized to evaluate the association of LCD score with cognitive performance. Stratified analyses based on age, body mass index (BMI), gender, marital status, education level was conducted.
Results
After adjusting age, education level, marital status, household income, history of diabetes, history of hypertension, history of congestive heart failure, history of coronary heart disease, history of heart disease, history of stroke, magnesium and the using of psychotropic medication, LCD score was correlated with the CERAD word learning subtest. The associations between LCD score and AFT, DSST were not statistically significant. Moreover, LCD score was also related to cognitive performance among individuals who were aged < 65 years or BMI 25–30 kg/m
2
or was married/separated, or had an education level of high school or above.
Conclusion
The adherences to LCD might be associated with the risk of cognitive performance among older adults. Further large-scale cohort studies are needed to test the causal relationship of LCD and cognitive performance.
Journal Article
Satellite-to-ground quantum key distribution
2017
Quantum key distribution (QKD) uses individual light quanta in quantum superposition states to guarantee unconditional communication security between distant parties. However, the distance over which QKD is achievable has been limited to a few hundred kilometres, owing to the channel loss that occurs when using optical fibres or terrestrial free space that exponentially reduces the photon transmission rate. Satellite-based QKD has the potential to help to establish a global-scale quantum network, owing to the negligible photon loss and decoherence experienced in empty space. Here we report the development and launch of a low-Earth-orbit satellite for implementing decoy-state QKD—a form of QKD that uses weak coherent pulses at high channel loss and is secure because photon-number-splitting eavesdropping can be detected. We achieve a kilohertz key rate from the satellite to the ground over a distance of up to 1,200 kilometres. This key rate is around 20 orders of magnitudes greater than that expected using an optical fibre of the same length. The establishment of a reliable and efficient space-to-ground link for quantum-state transmission paves the way to global-scale quantum networks.
Decoy-state quantum key distribution from a satellite to a ground station is achieved with much greater efficiency than is possible over the same distance using optical fibres.
Quantum security in orbit
The laws of quantum physics give rise to protocols for ultra-secure cryptography and quantum communications. However, to be useful in a global network, these protocols will have to function with satellites. Extending existing protocols to such long distances poses a tremendous experimental challenge. Researchers led by Jian-Wei Pan present a pair of papers in this issue that take steps toward a global quantum network, using the low-Earth-orbit satellite Micius. They demonstrate satellite-to-ground quantum key distribution, an integral part of quantum cryptosystems, at kilohertz rates over 1,200 kilometres, and report quantum teleportation of a single-photon qubit over 1,400 kilometres. Quantum teleportation is the transfer of the exact state of a quantum object from one place to another, without physical travelling of the object itself, and is a central process in many quantum communication protocols. These two experiments suggest that Micius could become the first component in a global quantum internet.
Journal Article