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Environmental pollutants from different chemical families may reach the gut microbiome, where they can be metabolized and transformed. However, how our gut symbionts respond to the exposure to environmental pollution is still underexplored. In this observational, cohort study, we aim to investigate the influence of environmental pollution on the gut microbiome composition and potential activity by shotgun metagenomics. We select as a case study a population living in a highly polluted area in Campania region (Southern Italy), proposed as an ideal field for exposomic studies and we compare the fecal microbiome of 359 subjects living in areas with high, medium and low environmental pollution. We highlight changes in gut microbiome composition and functionality that were driven by pollution exposure. Subjects from highly polluted areas show higher blood concentrations of dioxin and heavy metals, as well as an increase in microbial genes related to degradation and/or resistance to these molecules. Here we demonstrate the dramatic effect that environmental xenobiotics have on gut microbial communities, shaping their composition and boosting the selection of strains with degrading capacity. The gut microbiome can be considered as a pivotal player in the environment-health interaction that may contribute to detoxifying toxic compounds and should be taken into account when developing risk assessment models. The study was registered at ClinicalTrials.gov with the identifier NCT05976126. In this study, the authors employ metagenomics to explore the impact of environmental pollution on the human gut microbiome using samples from a cohort living in a very polluted area in Southern Italy, showing that pollutants degradation genes are more abundant in subjects with higher blood levels of those specific xenobiotics.

Otitis externa is a common multifactorial disease in dogs, characterized by broad and complex modifications of the ear microbiota. The goal of our study was to describe the ear cerumen microbiota of healthy dogs, within the same animal and between different animals, and to compare the cerumen microbiota of otitis affected dogs with that of healthy animals. The present study included 26 healthy dogs, 16 animals affected by bilateral otitis externa and 4 animals affected by monolateral otitis externa. For each animal cerumen samples from the right and left ear were separately collected with sterile swabs, and processed for DNA extraction and PCR amplification of the 16S rRNA gene. Amplicon libraries were sequenced using an Ion Torrent Personal Genome Machine (PGM), and taxonomical assignment and clustering were performed using QIIME 2 software. Our results indicate that the bacterial community of the cerumen in healthy dogs was characterized by extensive variability, with the most abundant phyla represented by Proteobacteria, Actinobacteria, Firmicutes, Bacteroidetes and Fusobacteria. The analysis of both alpha and beta diversity between pairs of left and right ear samples from the same dog within the group of affected animals displayed higher differences than between paired samples across healthy dogs. Moreover we observed reduced bacterial richness in the affected group as compared with controls and increased variability in population structure within otitis affected animals, often associated with the proliferation of a single bacterial taxon over the others. Moreover, Staphylococcus and Pseudomonas resulted to be the bacterial genera responsible for most distances between the two groups, in association with differences in the bacterial community structure. The cerumen microbiota in healthy dogs exhibits a complex bacterial population which undergoes significant modifications in otitis affected animals.

An outbreak of winter dysentery, complicated by severe respiratory syndrome, occurred in January 2020 in a high production dairy cow herd located in a hilly area of the Calabria region. Of the 52 animals belonging to the farm, 5 (9.6%) died with severe respiratory distress, death occurring 3–4 days after the appearance of the respiratory signs (caught and gasping breath). Microbiological analysis revealed absence of pathogenic bacteria whilst Real-time PCR identified the presence of RNA from Bovine Coronavirus (BCoV) in several organs: lungs, small intestine (jejunum), mediastinal lymph nodes, liver and placenta. BCoV was therefore hypothesized to play a role in the lethal pulmonary infection. Like the other CoVs, BCoV is able to cause different syndromes. Its role in calf diarrhea and in mild respiratory disease is well known: we report instead the involvement of this virus in a severe and fatal respiratory disorder, with symptoms and disease evolution resembling those of Severe Acute Respiratory Syndromes (SARS).

Usutu virus (USUV) is an emerging mosquito-borne flavivirus closely related to West Nile virus (WNV), sharing ecological niches and transmission cycles involving Culex mosquitoes and wild birds. In Italy, USUV was first detected in 1996 and has become endemic in northern regions, whereas, to date, no cases have been reported in southern Italy. In August 2025, a yellow-legged gull ( Larus michahellis ) from the provinces of Salerno for passive surveillance and a Eurasian jay ( Garrulus glandarius ) during active surveillance from Caserta (southern Italy), were examined. Heart, spleen, kidney, and brain tissues were collected for virological investigation. Real-time RT-PCR assays targeting West Nile virus and Usutu virus were performed and USUV RNA was detected in both avian specimens, while samples tested negative for WNV. Next, entomological surveillance was conducted on both sites and a mosquito pool collected near the yellow-legged gull carcass tested positive. Positive samples were subjected to Sanger sequencing of the NS5 gene. BLAST and phylogenetic analyses revealed strain belonged to lineage Europe 2, sub-group 2-A showing 99.6% nucleotide identity with northern Italian strains circulating between 2018 and 2023 and 99.8% identity with northern European strains circulating between 2016 and 2024. These findings suggest two possible scenarios: local southward spread of an autochthonous Italian strain or a recent introduction from other European countries mediated by migratory wild birds. This study provides the first molecular evidence of USUV circulation in southern Italy and underscores the critical role of molecular epidemiology and phylogenetic analysis in tracing routes of pathogen introduction and spread.

Toxoplasma gondii is an emerging cause of neurologic disease in cetaceans. In the present study, we combined molecular detection, microsatellite genotyping, and neuropathology in stranded striped dolphins along the coasts of Campania and Calabria (Southern Italy). During the years 2018–2023, 93 cetaceans were necropsied. Brain tissues were screened for T. gondii DNA by Real-Time PCR targeting the 529-bp repeat element; positive samples (Ct range 21–30) were genotyped using eight microsatellite markers (TUB2, W35, TgM-A, B18, B17, M33, IV.1 and XI.1) and compared with reference strains by hierarchical clustering. Histology and immunohistochemistry (IHC) for T. gondii were performed on available brains. T. gondii DNA in the brain was detected in 12/93 cetaceans; all positive cases were striped dolphins ( Stenella coeruleoalba ). Genotyping revealed two genotypes, with GII in 10/12 dolphins and GIII in 2/12. In 10 evaluable cases, lesions ranged from mild non-suppurative meningitis/meningoencephalitis to severe necrotizing encephalitis. IHC was positive in 7/10 positive cases; tissue cysts were observed in proximity to lesions in the more severely affected brains. These findings document the circulation of multiple T. gondii genotypes in pelagic dolphins from Southern Italy, supporting the land-to-sea transmission hypothesis and confirming the value of striped dolphins as sentinels of terrestrial pathogens from a One Health perspective.

In this study, a historically significant journal subject to fungal colonization was used as a case study for experimenting with a fumigation treatment using essential oils. The experiments were carried out both in vitro and in vivo directly on the artifact. Post-treatment monitoring showed that the succession of two fumigation treatments (alternately using rosemary and lavender oil) resulted in the complete disinfection of the first and second populations detected on the substrate. The latter was identified as Trichoderma longibrachiatum, a human pathogenic species, which was found to be sensitive to various concentrations of rosemary essential oil (1.2% v/v) and lavender essential oil (0.4% v/v), while it was not contained by the standard biocide based on benzalkonium chloride. The results obtained allowed the proposal of an application protocol for the fumigation of paper items that need to undergo biocidal treatment, which consists of alternating essential oils to increase the action spectrum of the natural substances and implementing a rotation principle to prevent the development of bio-resistances.

Toxoplasmosis is caused by the protozoal parasite and can be acquired through the consumption of food and water contaminated with sporulated oocysts and tissue cysts. The parasite is characterized by high host flexibility, being able to infect all warm-blooded animals, including birds and mammals. Wild birds are considered important reservoirs of infectious agents, some of which possess zoonotic potential. To date, few data are available on the role of these animals in the transmission of , especially in the Italian Peninsula. To address this gap, the present study investigated the circulation and genetic diversity of this parasite in various wild bird species, with the aim to assess the role of avian hosts in the epidemiology of the parasite. In 2023-2024, 256 carcasses belonging to 39 different wild bird species were collected in Campania and Calabria Regions and analyzed to assess the presence of in the animal tissues. Out of 256 birds, 15 (5.9%) resulted positive for parasite DNA: 6 (40.0%) belonged to genotype GII and 1 (6.6%) to genotype GIII. Interestingly, 11/15 (73.3%) infected animals were non-migratory species and 10/15 (66.7%) were classified as omnivore/scavenger wild birds. Monitoring and genotyping in birds could help to understand the environmental spread of oocysts. What's more, given the remarkable ecological diversity of wild avian species (different feeding habits and migratory behavior), surveillance of avian populations could deepen our understanding of transmission dynamics and implement public health interventions and environmental management strategies.

Salmonella enterica subsp. enterica Serovar Enteritidis is one of the major pathogens associated with enteric diseases in animals and humans. Thus, due to the importance of Salmonella spp. infections for animal production and public health, the aim of the present study was to describe the first detection of S. enteritidis in an aborted water buffalo fetus in southern Italy by characterizing the phylogroup profile and the antimicrobial susceptibility of the isolated pathogenic strains. The different clinical manifestations of salmonellosis in animals include diarrhea, abortion, pneumonia, septic arthritis, meningitis, and others, depending on the virulence of the serovars, infectious dose, and host immunity. This study reports the first case of abortion caused by Salmonella enterica subsp enterica serovar Enteritidis in water buffalo ( Bubalus bubalis ) in the Campania region, southern Italy. Complete necropsy was performed on the aborted water buffalo fetus under study, and samples and swabs from different organs were collected. Samples were processed by microbiological and molecular analyses to detect bacterial, viral, and protozoarian pathogens possibly responsible for abortion. Whole genome sequencing (WGS) was carried out to further characterize the isolated S . Enteritidis strain. Our findings highlight the crucial role of S . Enteritidis as a potential abortive agent in water buffalo and its presence should therefore be investigated in cases of bubaline abortion.

Impaired fertility associated with disorders of sex development (DSDs) due to genetic causes in dogs are more and more frequently reported. Affected dogs are usually of specific breeds thus representing a cause of economic losses for breeders. The aim of this research is to report the clinical, cytogenetic and molecular genetic findings of four XX SRY-negative DSD dog cases. All the subjects showed a female aspect and the presence of an enlarged clitoris with a penis bone. Morphopathological analyses performed in three of the four cases showed the presence of testes in two cases and ovotestis in another. Conventional and R-banded cytogenetic techniques were applied showing that no chromosome abnormalities were involved in these DSDs. CGH arrays show the presence of 11 copy number variations (CNVs), one of which is a duplication of 458 Kb comprising the genomic region between base 17,503,928 and base 17,962,221 of chromosome 9 (CanFam3 genome assembly). This CNV, confirmed also by qPCR, includes the promoter region of SOX9 gene and could explain the observed phenotype.

IntroductionFollowing the increase of wild boar ( Sus scrofa ) populations in Europe, a potential risk of emerging infections by vector-borne pathogens may occur. Despite this, the circulation of piroplasmid species in these ungulates is still a neglected topic, particularly in the Mediterranean basin. Therefore, this study aimed to investigate the presence of Babesia / Theileria spp. in wild boars from southern Italy to assess the epidemiological role of these ungulates in the circulation of piroplasmids.MethodsBy using a citizen science approach among hunters and veterinarians, wild boar spleen samples were collected in the Campania region (southern Italy) between 2016 and 2022. A combined semi-nested PCR/sequencing analysis targeting the V4 hyper-variable region of 18S rRNA was run to detect Babesia / Theileria spp. DNA.ResultsOut of 243 boars, 15 (i.e., 6.2, 95% CI: 3.4–9.9) tested positive to Babesia / Theileria spp., Babesia vulpes ( n = 13, 5.3, 95% CI: 3.1–8.9) the most prevalent, followed by Babesia capreoli ( n = 2, 0.8, 95% CI: 0.2–2.9). Three different B. vulpes sequence types were identified (i.e., ST1, ST2, ST3), with the most representative as ST1 (60%), and a single B. capreoli sequence type. No statistically significant difference ( p > 0.05) were found between the presence of the pathogens and boar age, sex, province and sample collection year.DiscussionData demonstrate for the first time the occurrence of B. vulpes and B. capreoli in wild boars, which may play a role in the biological cycle of piroplasmids. We emphasize the importance of monitoring these ungulates to prevent potential foci of infection . The engagement of hunters in epidemiological scientifically based surveys can constitute a technically sound control strategy of piroplasmids in a One Health perspective.