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result(s) for
"Ricciuto, Dan"
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Impact of hydrological variations on modeling of peatland CO2 fluxes: Results from the North American Carbon Program site synthesis
2012
Northern peatlands are likely to be important in future carbon cycle‐climate feedbacks due to their large carbon pools and vulnerability to hydrological change. Use of non‐peatland‐specific models could lead to bias in modeling studies of peatland‐rich regions. Here, seven ecosystem models were used to simulate CO2fluxes at three wetland sites in Canada and the northern United States, including two nutrient‐rich fens and one nutrient‐poor,sphagnum‐dominated bog, over periods between 1999 and 2007. Models consistently overestimated mean annual gross ecosystem production (GEP) and ecosystem respiration (ER) at all three sites. Monthly flux residuals (simulated – observed) were correlated with measured water table for GEP and ER at the two fen sites, but were not consistently correlated with water table at the bog site. Models that inhibited soil respiration under saturated conditions had less mean bias than models that did not. Modeled diurnal cycles agreed well with eddy covariance measurements at fen sites, but overestimated fluxes at the bog site. Eddy covariance GEP and ER at fens were higher during dry periods than during wet periods, while models predicted either the opposite relationship or no significant difference. At the bog site, eddy covariance GEP did not depend on water table, while simulated GEP was higher during wet periods. Carbon cycle modeling in peatland‐rich regions could be improved by incorporating wetland‐specific hydrology and by inhibiting GEP and ER under saturated conditions. Bogs and fens likely require distinct plant and soil parameterizations in ecosystem models due to differences in nutrients, peat properties, and plant communities. Key Points Models overestimated photosynthesis and respiration at all sites Simulated CO2 fluxes were more accurate at fen sites than at the bog site CO2 flux residuals were positively correlated with water table height
Journal Article
PHASE: Physics-Integrated, Heterogeneity-Aware Surrogates for Scientific Simulations
2025
Large-scale numerical simulations underpin modern scientific discovery but remain constrained by prohibitive computational costs. AI surrogates offer acceleration, yet adoption in mission-critical settings is limited by concerns over physical plausibility, trustworthiness, and the fusion of heterogeneous data. We introduce PHASE, a modular deep-learning framework for physics-integrated, heterogeneity-aware surrogates in scientific simulations. PHASE combines data-type-aware encoders for heterogeneous inputs with multi-level physics-based constraints that promote consistency from local dynamics to global system behavior. We validate PHASE on the biogeochemical (BGC) spin-up workflow of the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) Land Model (ELM), presenting-to our knowledge-the first scientifically validated AI-accelerated solution for this task. Using only the first 20 simulation years, PHASE infers a near-equilibrium state that otherwise requires more than 1,200 years of integration, yielding an effective reduction in required integration length by at least 60x. The framework is enabled by a pipeline for fusing heterogeneous scientific data and demonstrates strong generalization to higher spatial resolutions with minimal fine-tuning. These results indicate that PHASE captures governing physical regularities rather than surface correlations, enabling practical, physically consistent acceleration of land-surface modeling and other complex scientific workflows.
Efficient surrogate modeling methods for large-scale Earth system models based on machine-learning techniques
2019
Improving predictive understanding of Earth system variability and change requires data–model integration. Efficient data–model integration for complex models requires surrogate modeling to reduce model evaluation time. However, building a surrogate of a large-scale Earth system model (ESM) with many output variables is computationally intensive because it involves a large number of expensive ESM simulations. In this effort, we propose an efficient surrogate method capable of using a few ESM runs to build an accurate and fast-to-evaluate surrogate system of model outputs over large spatial and temporal domains. We first use singular value decomposition to reduce the output dimensions and then use Bayesian optimization techniques to generate an accurate neural network surrogate model based on limited ESM simulation samples. Our machine-learning-based surrogate methods can build and evaluate a large surrogate system of many variables quickly. Thus, whenever the quantities of interest change, such as a different objective function, a new site, and a longer simulation time, we can simply extract the information of interest from the surrogate system without rebuilding new surrogates, which significantly reduces computational efforts. We apply the proposed method to a regional ecosystem model to approximate the relationship between eight model parameters and 42 660 carbon flux outputs. Results indicate that using only 20 model simulations, we can build an accurate surrogate system of the 42 660 variables, wherein the consistency between the surrogate prediction and actual model simulation is 0.93 and the mean squared error is 0.02. This highly accurate and fast-to-evaluate surrogate system will greatly enhance the computational efficiency of data–model integration to improve predictions and advance our understanding of the Earth system.
Journal Article
Charges shock hockey league
2004
Two Fort Erie brothers, one of whom owns the Fort Erie Meteors junior B hockey team, have been charged with trafficking cocaine. Charged with possession for the purpose of trafficking are Meteors owner Antonio ([Tony Passero]) Passero, 48, and Gino Passero, 55. Passero has owned the team for more than 20 years and played in the junior B loop before that. He was the Meteors' head coach until three years ago when Wayne Groulx took over and Passero became an assistant coach.
Newspaper Article
Meteors team owner faces drug charges
2004
NIAGARA FALLS - Two Fort Erie brothers, one of whom owns the Fort Erie Meteors junior hockey team, have been charged with trafficking cocaine. Charged with possession for the purpose of trafficking are Gino Passero, 55, and Antonio ([Tony Passero]) Passero, 48.
Newspaper Article
Improving E3SM Land Model Photosynthesis Parameterization via Satellite SIF, Machine Learning, and Surrogate Modeling
2023
The parameterization of key photosynthesis parameters is one of the key uncertain sources in modeling ecosystem gross primary productivity (GPP). Solar‐induced chlorophyll fluorescence (SIF) offers a good proxy for GPP since it marks the actual process of photosynthesis; while machine learning (ML) provides a robust approach to model the GPP‐SIF relationship. Here, we trained the boosted regressing tree (BRT) and the Random Forest ML models with Greenhouse Gases Observing Satellite SIF data and in situ GPP observations from 49 eddy covariance towers. These trained ML GPP‐SIF models were fed into the Energy Exascale Earth System Model (E3SM) Land Model (ELM) to generate ELM‐simulated global SIF estimates, which were then benchmarked against satellite SIF observations with a surrogate modeling approach. Our results indicated good modeling performance of the ML‐based GPP‐SIF relationship. The ELM model when fed with the ML GPP‐SIF models also can well predict the spatial‐temporal variations in SIF. We also found high model accuracy for the surrogate modeling. Model parameter sensitivity analysis suggested that the fraction of leaf nitrogen in RuBisCO (flnr) is the most sensitive parameter to the SIF; other sensitive parameters include the Ball‐Berry stomatal conductance slope (mbbopt) and the vcmax entropy (vcmaxse). The posterior uncertainty in simulated GPP was greatly reduced after benchmarking, and the model produced improved spatial patterns of mean GPP relative to FLUXCOM GPP. Our integrated approach provides a new avenue for improving land models and using remote‐sensing SIF, which can be further improved in the future with more ground‐ and satellite‐based observations. Plain Language Summary Model estimation of photosynthesis product, that is, gross primary productivity (GPP), is a challenging but vital task. One of the keys is to find better values for key parameters. This parameter searching process requires good proxies for GPP that can be widely available across space and time, good statistical methods to relate proxies to GPP and to make best estimations that reduce the gaps between modeled results and observations. Here, we designed a new method that use solar‐induced chlorophyll fluorescence (SIF, a good proxy for photosynthesis) as a key input, and employ machine learning (a robust way to relate SIF and GPP) and surrogate modeling (a good method for finding the best parameters), to improve the photosynthesis parameterization in the Energy Exascale Earth System Model (E3SM) Land Model (ELM), a state‐of‐the‐art terrestrial biosphere model. Our results demonstrate that this new integrated approach has great potential for improving the parameterization of key photosynthesis parameters in land models. Key Points We built a unique method to improve gross primary productivity (GPP) modeling in land models This method integrates solar‐induced chlorophyll fluorescence observations, machine learning, and surrogate modeling The method reduced posterior uncertainties in simulated GPP and improved the modeling of its spatial patterns
Journal Article
Bayesian calibration of terrestrial ecosystem models: a study of advanced Markov chain Monte Carlo methods
2017
Calibration of terrestrial ecosystem models is important but challenging. Bayesian inference implemented by Markov chain Monte Carlo (MCMC) sampling provides a comprehensive framework to estimate model parameters and associated uncertainties using their posterior distributions. The effectiveness and efficiency of the method strongly depend on the MCMC algorithm used. In this work, a differential evolution adaptive Metropolis (DREAM) algorithm is used to estimate posterior distributions of 21 parameters for the data assimilation linked ecosystem carbon (DALEC) model using 14 years of daily net ecosystem exchange data collected at the Harvard Forest Environmental Measurement Site eddy-flux tower. The calibration of DREAM results in a better model fit and predictive performance compared to the popular adaptive Metropolis (AM) scheme. Moreover, DREAM indicates that two parameters controlling autumn phenology have multiple modes in their posterior distributions while AM only identifies one mode. The application suggests that DREAM is very suitable to calibrate complex terrestrial ecosystem models, where the uncertain parameter size is usually large and existence of local optima is always a concern. In addition, this effort justifies the assumptions of the error model used in Bayesian calibration according to the residual analysis. The result indicates that a heteroscedastic, correlated, Gaussian error model is appropriate for the problem, and the consequent constructed likelihood function can alleviate the underestimation of parameter uncertainty that is usually caused by using uncorrelated error models.
Journal Article
A model-independent data assimilation (MIDA) module and its applications in ecology
2021
Models are an important tool to predict Earth system dynamics. An accurate prediction of future states of ecosystems depends on not only model structures but also parameterizations. Model parameters can be constrained by data assimilation. However, applications of data assimilation to ecology are restricted by highly technical requirements such as model-dependent coding. To alleviate this technical burden, we developed a model-independent data assimilation (MIDA) module. MIDA works in three steps including data preparation, execution of data assimilation, and visualization. The first step prepares prior ranges of parameter values, a defined number of iterations, and directory paths to access files of observations and models. The execution step calibrates parameter values to best fit the observations and estimates the parameter posterior distributions. The final step automatically visualizes the calibration performance and posterior distributions. MIDA is model independent, and modelers can use MIDA for an accurate and efficient data assimilation in a simple and interactive way without modification of their original models. We applied MIDA to four types of ecological models: the data assimilation linked ecosystem carbon (DALEC) model, a surrogate-based energy exascale earth system model: the land component (ELM), nine phenological models and a stand-alone biome ecological strategy simulator (BiomeE). The applications indicate that MIDA can effectively solve data assimilation problems for different ecological models. Additionally, the easy implementation and model-independent feature of MIDA breaks the technical barrier of applications of data–model fusion in ecology. MIDA facilitates the assimilation of various observations into models for uncertainty reduction in ecological modeling and forecasting.
Journal Article
Calibration of the E3SM Land Model Using Surrogate‐Based Global Optimization
2018
Calibration of the Energy Exascale Earth System Model (E3SM), land model (ELMv0) is challenging because of its model complexity, strong model nonlinearity, and significant computational requirements. Therefore, only a limited number of simulations can be allowed in any attempt to find a near‐optimal solution within an affordable time. The goal of this study is to calibrate some of the ELMv0 parameters to improve model projection of carbon fluxes. We propose a computationally efficient global optimization procedure using sparse‐grid based surrogates. We first use advanced sparse grid (SG) interpolation to construct a surrogate system of the ELMv0, and then calibrate the surrogate model in the optimization process. As the surrogate model is a polynomial whose evaluation is fast, it can be efficiently evaluated a sufficiently large number of times in the optimization, which facilitates the global search. We calibrate eight parameters against five years of net ecosystem exchange, total leaf area index, and latent heat flux data from the U.S. Missouri Ozark flux tower. The calibrated model is then used for predicting the three variables in the following 4 years. The results indicate that an accurate surrogate model can be created for the ELMv0 with a relatively small number of SG points, i.e., a few ELMv0 simulations that can be fully parallel. And, the application of the optimized parameters leads to a better model performance and a higher predictive capability than the default parameter values in the ELMv0. Key Points Propose a surrogate‐based global optimization method Apply the method to the E3SM land model for parameter optimization The optimization improves the model performance and prediction capability
Journal Article
Efficient surrogate modeling methods for large-scale Earth system models based on machine learning techniques
2019
Improving predictive understanding of Earth system variability and change requires data-model integration. Efficient data-model integration for complex models requires surrogate modeling to reduce model evaluation time. However, building a surrogate of a large-scale Earth system model (ESM) with many output variables is computationally intensive because it involves a large number of expensive ESM simulations. In this effort, we propose an efficient surrogate method capable of using a few ESM runs to build an accurate and fast-to-evaluate surrogate system of model outputs over large spatial and temporal domains. We first use singular value decomposition to reduce the output dimensions, and then use Bayesian optimization techniques to generate an accurate neural network surrogate model based on limited ESM simulation samples. Our machine learning based surrogate methods can build and evaluate a large surrogate system of many variables quickly. Thus, whenever the quantities of interest change such as a different objective function, a new site, and a longer simulation time, we can simply extract the information of interest from the surrogate system without rebuilding new surrogates, which significantly saves computational efforts. We apply the proposed method to a regional ecosystem model to approximate the relationship between 8 model parameters and 42660 carbon flux outputs. Results indicate that using only 20 model simulations, we can build an accurate surrogate system of the 42660 variables, where the consistency between the surrogate prediction and actual model simulation is 0.93 and the mean squared error is 0.02. This highly-accurate and fast-to-evaluate surrogate system will greatly enhance the computational efficiency in data-model integration to improve predictions and advance our understanding of the Earth system.