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Despite often being conceptualized as a thin layer of soil around roots, the rhizosphere is actually a dynamic system of interacting processes. Hiltner originally defined the rhizosphere as the soil influenced by plant roots. However, soil physicists, chemists, microbiologists, and plant physiologists have studied the rhizosphere independently, and therefore conceptualized the rhizosphere in different ways and using contrasting terminology. Rather than research-specific conceptions of the rhizosphere, the authors propose a holistic rhizosphere encapsulating the following components: microbial community gradients, macroorganisms, mucigel, volumes of soil structure modification, and depletion or accumulation zones of nutrients, water, root exudates, volatiles, and gases. These rhizosphere components are the result of dynamic processes and understanding the integration of these processes will be necessary for future contributions to rhizosphere science based upon interdisciplinary collaborations. In this review, current knowledge of the rhizosphere is synthesized using this holistic perspective with a focus on integrating traditionally separated rhizosphere studies. The temporal dynamics of rhizosphere activities will also be considered, from annual fine root turnover to diurnal fluctuations of water and nutrient uptake. The latest empirical and computational methods are discussed in the context of rhizosphere integration. Clarification of rhizosphere semantics, a holistic model of the rhizosphere, examples of integration of rhizosphere studies across disciplines, and review of the latest rhizosphere methods will empower rhizosphere scientists from different disciplines to engage in the interdisciplinary collaborations needed to break new ground in truly understanding the rhizosphere and to apply this knowledge for practical guidance.

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure.

Nanosized zero-valent iron (nZVI) is an effective land remediation tool, but there remains little information regarding its impact upon and interactions with the soil microbial community. nZVI stabilised with sodium carboxymethyl cellulose was applied to soils of three contrasting textures and organic matter contents to determine impacts on soil microbial biomass, phenotypic (phospholipid fatty acid (PLFA)), and functional (multiple substrate-induced respiration (MSIR)) profiles. The nZVI significantly reduced microbial biomass by 29 % but only where soil was amended with 5 % straw. Effects of nZVI on MSIR profiles were only evident in the clay soils and were independent of organic matter content. PLFA profiling indicated that the soil microbial community structure in sandy soils were apparently the most, and clay soils the least, vulnerable to nZVI suggesting a protective effect imparted by clays. Evidence of nZVI bactericidal effects on Gram-negative bacteria and a potential reduction of arbuscular mycorrhizal fungi are presented. Data imply that the impact of nZVI on soil microbial communities is dependent on organic matter content and soil mineral type. Thereby, evaluations of nZVI toxicity on soil microbial communities should consider context. The reduction of AM fungi following nZVI application may have implications for land remediation.

Soil salinity may damage crop production. Besides proper management of irrigation water, salinity reduction can be achieved through soil amendment. The objectives of this study were to evaluate the effects of rice husk biochar and compost amendments on alleviation of salinity and rice growth. Field experiments were conducted at two salt-affected paddy rice fields located in distinct sites for five continuous crops. Treatments, with four replicates, consisted of continuous three rice crops per year (RRR), two rice crops rotated with fallow in spring–summer crop (FRR), FRR plus compost at 3 Mg ha−1 crop−1 (FRR + Comp), and biochar at 10 Mg ha−1 crop−1 (FRR + BC). Salt contents and hydraulic properties of soils, plant biomass, and plant uptake of cations were investigated. Soil bulk density (BD), exchangeable sodium (Na+), and exchangeable sodium percentage (ESP) were reduced remarkably by biochar application. Biochar application significantly increased other soil properties including total porosity, saturated hydraulic conductivity (Ksat), soluble and exchangeable potassium (K+), K+/Na+ ratio, available P, and total C. Compost application also improved BD, total porosity, and available P, but not exchangeable Na+ and ESP. Total aboveground biomass of rice showed a trend of FRR + BC > FRR + Comp > FRR > RRR. Relatively higher K+ uptake and lower Na+ uptake in rice straw in FRR + BC resulted in a significant two times higher K+/Na+ ratio over other treatments. Our results highlight that biochar amendment is a beneficial option for reducing ESP and providing available K+ and P under salinity-affected P-deficient conditions, hence improving straw biomass.

Acid sulfate soil (ASS) has major problems related to phosphorus deficiency and high potential for N2O emissions, as well as strong acidity. The objective of this study was to evaluate the effects of rice husk biochar and compost on P availability and greenhouse gas (GHG) emissions in ASS in in vitro incubation studies. An ASS was amended with two types of rice husk biochar (at rates of 0 g kg−1, 20 g kg−1, and 50 g kg−1, equivalent to 0 Mg ha−1, 20 Mg ha−1, and 50 Mg ha−1, assuming that bulk density was 1 g cm−3 and evenly applied for 10 cm in depth) and compost (at rates of 0 g kg−1, 10 g kg−1, and 20 g kg−1, equivalent to 0 Mg ha−1, 10 Mg ha−1, and 20 Mg ha−1) and incubated. Application of compost increased labile P by 100% and 200% at rates of 10 g kg−1 and 20 g kg−1, respectively. Both biochars showed an increase in NaHCO3-soluble inorganic P by 16% to 30%, decreases in NaOH-soluble inorganic P and NaHCO3-soluble organic P. N2O emissions were significantly decreased by 80% by a biochar with a higher surface area and higher NH4+ adsorption capacity at a rate of 50 g kg−1 as compared with those in un-amended soil. In contrast, compost amendment at a rate of 10 g kg−1 significantly increased N2O emission by 150%. These results suggest that in ASS, whilst compost is more effective in improving P availability, biochar is more effective in mitigating GHG emissions, emphasizing that fundamental characteristics of organic amendments influenced the outcomes in terms of desirable effects.

Tropical peatlands in Southeast Asia are important ecosystems that play a crucial role in global biogeochemical cycles, with a potential for strong climate feedback loops. The degradation of tropical peatlands due to the expansion of oil palm plantations and their impact on biodiversity and the carbon balance is a global concern. The majority of conversion of Southeast Asian peatlands to agriculture has been by smallholder oil palm farmers, who follow more varied cropping systems compared to industrial plantations, and have better scope for expansion of other alternative varied cropping systems if supported and encouraged. Using previously-published data on peat physicochemical properties, biodiversity and greenhouse gas emissions from small-holder oil palm plantations, we determined that prolonged oil palm monocropping for two generations would result in loss of carbon and peat functional properties that may lead to potential declassification of peatlands. We propose intercropping during the early stages of oil palm as a wise alternative for already-existing plantations in tropical peatlands to ameliorate some of the negative environmental impacts of oil palm on the physio-chemical properties of peat. However, we emphasize the need to more fully explore the sustainability of intercropping systems throughout the life cycle of palm plantations on peatlands, and integrate with current management practices. We also emphasize the further need for research to fully assess the impacts of oil palm intercropping compared to widely-practiced oil palm monocropping. Finally, we suggest changes in government certification policies to encourage intercropping practices by smallholders.

Purpose A method to control soybean cyst nematode (SCN) is to grow green manure which releases hatching stimulants in the absence of host plants. We hypothesized that biochar may improve the efficacy of this control strategy. Methods We evaluated the effects of two hatch-stimulating plants ( Vigna radiata and Crotalaria spectabilis ) in combination with rice husk biochar on the plant growth, SCN density, and soil nematode community. Plants were cultivated in biochar-amended and unamended soils for one month and then incorporated. Soils were collected periodically for chemical properties, SCN, and nematode community assessment. Results Biochar increased total biomass of V. radiata and C. spectabilis significantly. For V. radiata alone, the number of SCN juveniles (J2) increased at three weeks and then decreased, but in biochar-amended soil J2 prevailed for three to seven weeks after residue incorporation. In soil incorporated with C. spectabilis , J2 were sustained consistently in biochar-amended soil. Nine weeks after residue incorporation, real-time PCR assays revealed that V. radiata reduced the SCN density by 96% and 91%, and that C. spectabilis reduced the SCN density by 72% and 48% with and without biochar, respectively. Incorporation of green manure in biochar-amended soil increased microbial activity and abundance of omnivorous nematodes, notably Ecumenicus and Aporcelaimellus species which were negatively correlated with the SCN density. Specifically, V. radiata increased the composite and enrichment footprints of nematodes, and omnivore and structure footprints were further increased by combination with biochar. Conclusion Biochar may improve the efficacy of a green manure-based strategy to control SCN.

Mung bean residues stimulate the hatching of soybean cyst nematode (SCN). In our previous study, combined incorporation of mung bean residues and biochar into soil can be effective in suppression of the soybean cyst nematode (SCN), Heterodera glycines, in the upper layer soil. However, there are no data available as to whether such effects are transmissible, and could for example be manifest in subsoil zones where such incorporation is confined to topsoils, via water-based pathways. We evaluated the effects of leachate passage from a biochar-amended soil in an upper soil zone to a lower zone in a microcosm-based system, upon a range of physicochemical properties and density of SCN. Disturbed soil was filled in a total of 9 cylindrical cores with two layers. The upper layer (0–15 cm) was amended with biochar at rates equivalent to 0, 0.3% or 1.8%, with bulk density set at of 1.1 g cm−3. The lower layer (15–25 cm) without biochar amendment was compacted to 1.2 g cm−3. Mung beans were grown for two weeks and incorporated into the upper layer. Water was surface-applied to the cores 4, 6, and 8 weeks after mung bean incorporation. After 16 weeks, the upper and lower layer soils were separately collected and assayed. The presence of biochar in the upper layer reduced the abundance of free-living nematodes, mainly bacterivorous, but increased that of a predator genus Ecumenicus in this zone. In the lower layer of soil under a biochar-amended upper layer, available P and soluble cations were increased as were abundances of total nematodes including Ecumenicus, resulting in greater maturity index, basal and structure indices. Notably, SCN density was decreased in lower zones by more than 90% compared to zero-biochar controls. This demonstrates that the effects of biochar upon soil properties, including impacts on biota and plant pathogens, are transmissible.

Given that rice husk biochar has been shown to modulate salinity in salt-affected acid soils, the objective of this study was to investigate the effects of organic amendment of salinized acid soils on P fractions, enzyme activities, and associated rice yield. Four treatments, viz. Rice–Rice–Rice, [RRR]; Fallow–Rice–Rice, [FRR]; Fallow–Rice–Rice + 3 Mg ha−1 of compost [FRR + Comp]; and Fallow–Rice–Rice + 10 Mg ha−1 of biochar [FRR + BC] were established at Ben Tre and Kien Giang sites, Viet Nam, over six consecutive crops. Soil properties at harvest of the sixth crop showed that there were diverse patterns of fractionation between P forms with respect to treatment. Overarchingly, biochar increased labile and moderately labile inorganic P and organic P by 30% to 70%, respectively, whilst compost had a relatively modest effect on these pools. Soil phosphatase activities at crop tillering increased following the FRR + Comp and FRR + BC treatments compared with those in RRR, except for acid phosphatase at Ben Tre. At harvest, there were no significant differences between the enzyme activities among the treatments. Rice yield was positively correlated with the more labile forms of P, soil C, and acid phosphatase activity. In the absence of organic amendments, there was no effect of triple versus double rice crops being grown in one-year cycle. Repeated application of biochar (10 Mg ha−1 × 5 times) showed potential to increase grain yields and total soil C in salt-affected acid soils, via modulation of P transformations to more plant-available forms.

BACKGROUND AND SCOPE: Multi-cropping approaches in production systems, where more than one crop cultivar or species are grown simultaneously, are gaining increased attention and application. Benefits can include increased production, effective pest, disease and weed control, and improved soil health. The effects of such practices on the range of interactions within the plant-soil system are manifest via plant interspecific competition, pest and disease attenuation, soil community composition and structure, nutrient cycling, and soil structural dynamics. Interplant diversity and competition effectively increases the nature and extent of root networks, tending to lead to more efficient resource use in time and space. Increased competitive ability at a system level, and allelopathic interactions, can reduce weed, pest and disease severity. Soil biotic communities are affected by plant diversity, which can increase abundance, diversity and activity of functional groups. Attendant rhizosphere-located processes can facilitate nutrient uptake between component crops. Whilst there are few studies into multi-cropping effects on soil structure, it is hypothesised that such processes are manifest particularly via the role which the belowground biota play in soil structural dynamics. A deeper understanding of eco-physiological processes affecting weed, pest and disease dynamics in the context of multiple cropping scenarios, and breeding cultivars to optimise mutualistic and allelopathic traits of crop mixtures could significantly increase productivity and adoption of more sustainable farming practices. CONCLUSIONS: Wider consideration needs to be given to plant: soil interactions when crop plants are grown in the context of mixtures, i.e. as communities as opposed to monotonous populations. In particular, a better understanding is required of how root systems develop in the context of mixtures and the extent to which resultant interactions with the soil biota are context-dependent. A significant challenge is that crop cultivars or production systems optimised for monocultural circumstances should not be assumed to be most suited for multi-cropping scenarios, and hence alternative strategies for developing new production systems need to take this into account.