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Molecules with hydroperoxide functional groups are of extreme importance to both the atmospheric and biological chemistry fields. In this work, an analytical method is presented for the identification of organic hydroperoxides and peroxy acids (ROOH) by direct infusion of liquid samples into a positive-ion atmospheric pressure chemical ionization–tandem mass spectrometer ((+)-APCI-MS/MS). Under collisional dissociation conditions, a characteristic neutral loss of 51 Da (arising from loss of H2O2+NH3) from ammonium adducts of the molecular ions ([M + NH4]+) is observed for ROOH standards (i.e. cumene hydroperoxide, isoprene-4-hydroxy-3-hydroperoxide (ISOPOOH), tert-butyl hydroperoxide, 2-butanone peroxide and peracetic acid), as well as the ROOH formed from the reactions of H2O2 with aldehydes (i.e. acetaldehyde, hexanal, glyoxal and methylglyoxal). This new ROOH detection method was applied to methanol extracts of secondary organic aerosol (SOA) material generated from ozonolysis of α-pinene, indicating a number of ROOH molecules in the SOA material. While the full-scan mass spectrum of SOA demonstrates the presence of monomers (m∕z = 80–250), dimers (m∕z = 250–450) and trimers (m∕z = 450–600), the neutral loss scan shows that the ROOH products all have masses less than 300 Da, indicating that ROOH molecules may not contribute significantly to the SOA oligomeric content. We anticipate this method could also be applied to biological systems with considerable value.

Isoprene photooxidation is a major driver of atmospheric chemistry over forested regions. Isoprene reacts with hydroxyl radicals (OH) and molecular oxygen to produce isoprene peroxy radicals (ISOPOO). These radicals can react with hydroperoxyl radicals (HO₂) to dominantly produce hydroxyhydroperoxides (ISOPOOH). They can also react with nitric oxide (NO) to largely produce methyl vinyl ketone (MVK) and methacrolein (MACR). Unimolecular isomerization and bimolecular reactions with organic peroxy radicals are also possible. There is uncertainty about the relative importance of each of these pathways in the atmosphere and possible changes because of anthropogenic pollution. Herein, measurements of ISOPOOH and MVK + MACR concentrations are reported over the central region of the Amazon basin during the wet season. The research site, downwind of an urban region, intercepted both background and polluted air masses during the GoAmazon2014/5 Experiment. Under background conditions, the confidence interval for the ratio of the ISOPOOH concentration to that of MVK + MACR spanned 0.4–0.6. This result implies a ratio of the reaction rate of ISOPOO with HO₂ to that with NO of approximately unity. A value of unity is significantly smaller than simulated at present by global chemical transport models for this important, nominally low-NO, forested region of Earth. Under polluted conditions, when the concentrations of reactive nitrogen compounds were high (>1 ppb), ISOPOOH concentrations dropped below the instrumental detection limit (<60 ppt). This abrupt shift in isoprene photooxidation, sparked by human activities, speaks to ongoing and possible future changes in the photochemistry active over the Amazon rainforest.

The hydroxyl (OH), hydroperoxy (HO2), and organic peroxy (RO2) radicals play important roles in atmospheric chemistry. In the presence of nitrogen oxides (NOx), reactions between OH and volatile organic compounds (VOCs) can initiate a radical propagation cycle that leads to the production of ozone and secondary organic aerosols. Previous measurements of these radicals under low-NOx conditions in forested environments characterized by emissions of biogenic VOCs, including isoprene and monoterpenes, have shown discrepancies with modeled concentrations.During the summer of 2016, OH, HO2, and RO2 radical concentrations were measured as part of the Program for Research on Oxidants: Photochemistry, Emissions, and Transport – Atmospheric Measurements of Oxidants in Summer (PROPHET-AMOS) campaign in a midlatitude deciduous broadleaf forest. Measurements of OH and HO2 were made by laser-induced fluorescence–fluorescence assay by gas expansion (LIF-FAGE) techniques, and total peroxy radical (XO2) mixing ratios were measured by the Ethane CHemical AMPlifier (ECHAMP) instrument. Supporting measurements of photolysis frequencies, VOCs, NOx, O3, and meteorological data were used to constrain a zero-dimensional box model utilizing either the Regional Atmospheric Chemical Mechanism (RACM2) or the Master Chemical Mechanism (MCM). Model simulations tested the influence of HOx regeneration reactions within the isoprene oxidation scheme from the Leuven Isoprene Mechanism (LIM1). On average, the LIM1 models overestimated daytime maximum measurements by approximately 40 % for OH, 65 % for HO2, and more than a factor of 2 for XO2. Modeled XO2 mixing ratios were also significantly higher than measured at night. Addition of RO2 + RO2 accretion reactions for terpene-derived RO2 radicals to the model can partially explain the discrepancy between measurements and modeled peroxy radical concentrations at night but cannot explain the daytime discrepancies when OH reactivity is dominated by isoprene. The models also overestimated measured concentrations of isoprene-derived hydroxyhydroperoxides (ISOPOOH) by a factor of 10 during the daytime, consistent with the model overestimation of peroxy radical concentrations. Constraining the model to the measured concentration of peroxy radicals improves the agreement with the measured ISOPOOH concentrations, suggesting that the measured radical concentrations are more consistent with the measured ISOPOOH concentrations. These results suggest that the models may be missing an important daytime radical sink and could be overestimating the rate of ozone and secondary product formation in this forest.

In-cloud chemistry has important ramifications for atmospheric particulate matter formation and gas-phase chemistry. Recent work has shown that, like hydrogen peroxide (H2O2), the two main isomers of isoprene hydroxyl hydroperoxide (ISOPOOH) oxidize sulfur dioxide dissolved in cloud droplets (SO2,aq) to sulfate. The work revealed that the pathway of SO2,aq oxidation with ISOPOOH differs from that of H2O2. We investigate the chemical mechanisms of oxidation of SO2,aq with ISOPOOH in the cloud-relevant pH range of 3–6 and compare them with the previously reported mechanisms of oxidation of SO2,aq with H2O2, methyl hydroperoxide and peroxyacetic acid. The organic products of the reaction are identified, and two pathways are proposed. For 1,2-ISOPOOH, a higher yield pathway via proposed radical intermediates yields methyl vinyl ketone (MVK) and formaldehyde, which can react to hydroxymethanesulfonate (HMS) when SO2,aq is present. A lower yield non-fragmentation oxygen addition pathway is proposed that results in the formation of isoprene-derived diols (ISOPOH). Based on global simulations, this mechanism is not a significant pathway for formation of MVK and formaldehyde relative to their gas-phase formation but, as previously reported, it can be regionally important for sulfate production. The study adds to previous work that highlights similarities and differences between gas-phase and cloud-droplet processing of reactive organic carbon.

We present measurements of secondary organic aerosol (SOA) formation from isoprene photochemical oxidation in an environmental simulation chamber at a variety of oxidant conditions and using dry neutral seed particles to suppress acid-catalyzed multiphase chemistry. A high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) utilizing iodide-adduct ionization coupled to the Filter Inlet for Gases and Aerosols (FIGAERO) allowed for simultaneous online sampling of the gas and particle composition. Under high-HO2 and low-NO conditions, highly oxygenated (O:C ≥ 1) C5 compounds were major components (∼ 50%) of SOA. The SOA composition and effective volatility evolved both as a function of time and as a function of input NO concentrations. Organic nitrates increased in both the gas and particle phases as input NO increased, but the dominant non-nitrate particle-phase components monotonically decreased. We use comparisons of measured and predicted gas-particle partitioning of individual components to assess the validity of literature-based group-contribution methods for estimating saturation vapor concentrations. While there is evidence for equilibrium partitioning being achieved on the chamber residence timescale (5.2h) for some individual components, significant errors in group-contribution methods are revealed. In addition, >30% of the SOA mass, detected as low-molecular-weight semivolatile compounds, cannot be reconciled with equilibrium partitioning. These compounds desorb from the FIGAERO at unexpectedly high temperatures given their molecular composition, which is indicative of thermal decomposition of effectively lower-volatility components such as larger molecular weight oligomers.

Recent laboratory experiments have shown that a first generation isoprene oxidation product, ISOPOOH, can decompose to methyl vinyl ketone (MVK) and methacrolein (MACR) on instrument surfaces, leading to overestimates of MVK and MACR concentrations. Formaldehyde (HCHO) was suggested as a decomposition co-product, raising concern that in situ HCHO measurements may also be affected by an ISOPOOH interference. The HCHO measurement artifact from ISOPOOH for the NASA In Situ Airborne Formaldehyde instrument (ISAF) was investigated for the two major ISOPOOH isomers, (1,2)-ISOPOOH and (4,3)-ISOPOOH, under dry and humid conditions. The dry conversion of ISOPOOH to HCHO was 3 ± 2 % and 6 ± 4 % for (1,2)-ISOPOOH and (4,3)-ISOPOOH, respectively. Under humid (relative humidity of 40–60 %) conditions, conversion to HCHO was 6 ± 4 % for (1,2)-ISOPOOH and 10 ± 5 % for (4,3)-ISOPOOH. The measurement artifact caused by conversion of ISOPOOH to HCHO in the ISAF instrument was estimated for data obtained on the 6 September 2013 flight of the Studies of Emissions and Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC4RS) campaign. Prompt ISOPOOH conversion to HCHO was the source of < 4 % of the observed HCHO, including in the high-isoprene boundary layer. Time-delayed conversion, where previous exposure to ISOPOOH affects measured HCHO later in the flight, was conservatively estimated to be < 10 % of observed HCHO, and is significant only when high ISOPOOH sampling periods immediately precede periods of low HCHO.

The hydroxyl (OH), hydroperoxy (HO2), and organic peroxy (RO2) radicals play important roles in atmospheric chemistry. In the presence of nitrogen oxides (NOx), reactions between OH and volatile organic compounds (VOCs) can initiate a radical propagation cycle that leads to the production of ozone and secondary organic aerosols. Previous measurements of these radicals under low-NOx conditions in forested environments characterized by emissions of biogenic VOCs, including isoprene and monoterpenes, have shown discrepancies with modeled concentrations. During the summer of 2016, OH, HO2, and RO2 radical concentrations were measured as part of the Program for Research on Oxidants: Photochemistry, Emissions, and Transport – Atmospheric Measurements of Oxidants in Summer (PROPHET-AMOS) campaign in a midlatitude deciduous broadleaf forest. Measurements of OH and HO2 were made by laser-induced fluorescence–fluorescence assay by gas expansion (LIF-FAGE) techniques, and total peroxy radical (XO2) mixing ratios were measured by the Ethane CHemical AMPlifier (ECHAMP) instrument. Supporting measurements of photolysis frequencies, VOCs, NOx, O3, and meteorological data were used to constrain a zero-dimensional box model utilizing either the Regional Atmospheric Chemical Mechanism (RACM2) or the Master Chemical Mechanism (MCM). Model simulations tested the influence of HOx regeneration reactions within the isoprene oxidation scheme from the Leuven Isoprene Mechanism (LIM1). On average, the LIM1 models overestimated daytime maximum measurements by approximately 40 % for OH, 65 % for HO2, and more than a factor of 2 for XO2. Modeled XO2 mixing ratios were also significantly higher than measured at night. Addition of RO2 + RO2 accretion reactions for terpene-derived RO2 radicals to the model can partially explain the discrepancy between measurements and modeled peroxy radical concentrations at night but cannot explain the daytime discrepancies when OH reactivity is dominated by isoprene. The models also overestimated measured concentrations of isoprene-derived hydroxyhydroperoxides (ISOPOOH) by a factor of 10 during the daytime, consistent with the model overestimation of peroxy radical concentrations. Constraining the model to the measured concentration of peroxy radicals improves the agreement with the measured ISOPOOH concentrations, suggesting that the measured radical concentrations are more consistent with the measured ISOPOOH concentrations. These results suggest that the models may be missing an important daytime radical sink and could be overestimating the rate of ozone and secondary product formation in this forest.

The hydroxyl (OH), hydroperoxy (HO.sub.2 ), and organic peroxy (RO.sub.2) radicals play important roles in atmospheric chemistry. In the presence of nitrogen oxides (NO.sub.x ), reactions between OH and volatile organic compounds (VOCs) can initiate a radical propagation cycle that leads to the production of ozone and secondary organic aerosols. Previous measurements of these radicals under low-NO.sub.x conditions in forested environments characterized by emissions of biogenic VOCs, including isoprene and monoterpenes, have shown discrepancies with modeled concentrations.

We present measurements of secondary organic aerosol (SOA) formation from isoprene photochemical oxidation in an environmental simulation chamber at a variety of oxidant conditions and using dry neutral seed particles to suppress acid-catalyzed multiphase chemistry. A high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) utilizing iodide-adduct ionization coupled to the Filter Inlet for Gases and Aerosols (FIGAERO) allowed for simultaneous online sampling of the gas and particle composition. Under high-HO2 and low-NO conditions, highly oxygenated (O : C  ≥  1) C5 compounds were major components (∼ 50 %) of SOA. The SOA composition and effective volatility evolved both as a function of time and as a function of input NO concentrations. Organic nitrates increased in both the gas and particle phases as input NO increased, but the dominant non-nitrate particle-phase components monotonically decreased. We use comparisons of measured and predicted gas-particle partitioning of individual components to assess the validity of literature-based group-contribution methods for estimating saturation vapor concentrations. While there is evidence for equilibrium partitioning being achieved on the chamber residence timescale (5.2 h) for some individual components, significant errors in group-contribution methods are revealed. In addition, > 30 % of the SOA mass, detected as low-molecular-weight semivolatile compounds, cannot be reconciled with equilibrium partitioning. These compounds desorb from the FIGAERO at unexpectedly high temperatures given their molecular composition, which is indicative of thermal decomposition of effectively lower-volatility components such as larger molecular weight oligomers.

Atmospheric oxidation of volatile organic compounds (VOCs) leads to the formation of ozone (O3) and secondary organic aerosol (SOA), known atmospheric pollutants. These compounds have been shown to have negative health effects and in the case of SOA, have significant impacts on radiative forcing. Understanding the mechanisms of the atmospheric oxidation of VOCs helps improve models and allows us to predict their effects on air quality. VOCs are emitted by both anthropogenic and biogenic sources. Isoprene dominates biogenic emissions on a global scale making isoprene oxidation a significant topic in atmospheric chemistry. Despite considerable research efforts, the oxidation of isoprene in remote locations, which represents a large fraction of emitted isoprene, is not well understood.Oxidation of isoprene in remote environments leads to the formation of organic hydroperoxides known as isoprene hydroxyhydroperoxides (ISOPOOH). Due to a lack of synthetic standards, the atmospheric oxidation of organic hydroperoxides in general has only been studied indirectly, e.g., during oxidation experiments starting with isoprene. In this work, we synthetize standards of the most important ISOPOOH isomers and study their fate in the atmosphere.Our work covers three topics: 1) Characterization of instrumentation commonly used for ambient VOC measurements. We find that ISOPOOH can interfere with measurements of methyl vinyl ketone and methacrolein, products of isoprene oxidation in anthropogenically influenced environments. 2) We study the role of ISOPOOH during in-cloud oxidation and show that ISOPOOH oxidation in clouds leads to SOA formation with distinct characteristics. 3) We investigate the gas-phase isoprene oxidation mechanism and its products using a combination of chamber experiments and modeling using the Master Chemical Mechanism. We suggest changes that improve the representation of isoprene oxidation under a variety of atmospheric conditions.