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result(s) for
"Rohrsen, Christian"
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MARGO (Massively Automated Real-time GUI for Object-tracking), a platform for high-throughput ethology
by
Brembs, Björn
,
Werkhoven, Zach
,
Qin, Chuan
in
Algorithms
,
Animal behavior
,
Animal experimentation
2019
Fast object tracking in real time allows convenient tracking of very large numbers of animals and closed-loop experiments that control stimuli for many animals in parallel. We developed MARGO, a MATLAB-based, real-time animal tracking suite for custom behavioral experiments. We demonstrated that MARGO can rapidly and accurately track large numbers of animals in parallel over very long timescales, typically when spatially separated such as in multiwell plates. We incorporated control of peripheral hardware, and implemented a flexible software architecture for defining new experimental routines. These features enable closed-loop delivery of stimuli to many individuals simultaneously. We highlight MARGO's ability to coordinate tracking and hardware control with two custom behavioral assays (measuring phototaxis and optomotor response) and one optogenetic operant conditioning assay. There are currently several open source animal trackers. MARGO's strengths are 1) fast and accurate tracking, 2) high throughput, 3) an accessible interface and data output and 4) real-time closed-loop hardware control for for sensory and optogenetic stimuli, all of which are optimized for large-scale experiments.
Journal Article
MARGO
by
Brembs, Björn
,
de Bivort, Benjamin
,
Gilestro, Giorgio F
in
Animal behavior
,
Animal experimentation
,
Animal tracking
2019
Journal Article
MARGO
by
Gilestro, Giorgio F
,
Brembs, Björn
,
Werkhoven, Zach
in
Animal behavior
,
Animal experimentation
,
Animal tracking
2019
Fast object tracking in real time allows convenient tracking of very large numbers of animals and closed-loop experiments that control stimuli for many animals in parallel. We developed MARGO, a MATLAB-based, real-time animal tracking suite for custom behavioral experiments. We demonstrated that MARGO can rapidly and accurately track large numbers of animals in parallel over very long timescales, typically when spatially separated such as in multiwell plates. We incorporated control of peripheral hardware, and implemented a flexible software architecture for defining new experimental routines. These features enable closed-loop delivery of stimuli to many individuals simultaneously. We highlight MARGO's ability to coordinate tracking and hardware control with two custom behavioral assays (measuring phototaxis and optomotor response) and one optogenetic operant conditioning assay. There are currently several open source animal trackers. MARGO's strengths are 1) fast and accurate tracking, 2) high throughput, 3) an accessible interface and data output and 4) real-time closed-loop hardware control for for sensory and optogenetic stimuli, all of which are optimized for large-scale experiments.
Journal Article
MARGO
by
Brembs, Björn
,
de Bivort, Benjamin
,
Gilestro, Giorgio F
in
Animal behavior
,
Animal experimentation
,
Animal tracking
2019
Journal Article
Pain is so close to pleasure: the same dopamine neurons can mediate approach and avoidance in Drosophila
by
Kumpf, Aida
,
Brembs, Bjoern
,
Aydin, Ferruh
in
Avoidance behavior
,
Dopamine
,
Dopamine receptors
2021
In mammals, dopamine is considered a central neuromodulator involved in all kinds of rewarding experiences ('common currency' hypothesis). In insects, the role of dopaminergic neurons in aversive stimuli was discovered before dopaminergic neurons were found to also be involved in processing appetitive stimuli. Here, we screened about 50 transgenic Drosophila lines, representing different subpopulations of dopaminergic neurons for their ability to sustain approach or avoidance behavior, when activated optogenetically in four different operant self-stimulation paradigms. None of the lines sustain consistent behavioral valence in all experiments. Individual lines sustain approach in one experiment and avoidance in another. One line mediated strong avoidance early in the experiment and weak approach in later stages. The evidence presented here appears to contradict a 'common currency' dopamine function in flies. Instead, different dopaminergic neurons convey valence in a context-dependent and flexible manner, reflecting the genetic heterogeneity of the dopaminergic neuronal population. Competing Interest Statement The authors have declared no competing interest. Footnotes * Some references in introduction and discussion. * https://doi.org/10.6084/m9.figshare.16635841
MARGO (Massively Automated Real-time GUI for Object-tracking), a platform for high-throughput ethology
by
Brembs, Bjoern
,
Werkhoven, Zachary
,
Qin, Chuan
in
Animals
,
Neuroscience
,
Operant conditioning
2019
Fast object tracking in real time allows convenient tracking of very large numbers of animals and closed-loop experiments that control stimuli for multiple animals in parallel. We developed MARGO, a real-time animal tracking suite for custom behavioral experiments. We demonstrated that MARGO can rapidly and accurately track large numbers of animals in parallel over very long timescales. We incorporated control of peripheral hardware, and implemented a flexible software architecture for defining new experimental routines. These features enable closed-loop delivery of stimuli to many individuals simultaneously. We highlight MARGO's ability to coordinate tracking and hardware control with two custom behavioral assays (measuring phototaxis and optomotor response) and one optogenetic operant conditioning assay. There are currently several open source animal trackers. MARGO's strengths are 1) robustness, 2) high throughput, 3) flexible control of hardware and 4) real-time closed-loop control of sensory and optogenetic stimuli, all of which are optimized for large-scale experimentation. Footnotes * https://github.com/de-Bivort-Lab/margo * https://zenodo.org/record/2596143#.XJ3UmOtKiRd * https://github.com/de-Bivort-Lab/dblab-schematics