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"Rose, Julie"
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Development and application of an online tool to quantify nitrogen removal associated with harvest of cultivated eastern oysters
Shellfish aquaculture can provide important ecosystem services to coastal communities, yet these benefits are not typically considered within the aquaculture permit review process. Resource managers have expressed interest in easy-to-use tools, based on robust science, that produce location and operation-appropriate values for beneficial services. These values need to be produced in a format that aligns with existing regulatory processes to facilitate seamless integration with permit review. The removal of excess nitrogen from coastal waters by shellfish farms is well documented in the literature and has been incorporated into nutrient management in the USA. Shellfish assimilate nitrogen into their tissue and shell as they grow, and this nitrogen is removed from the environment upon harvest. We have assembled a dataset of nitrogen concentration and morphometric measurements from farmed eastern oysters across the US Northeast, and adapted methodology used by existing nutrient management programs to quantify harvest-associated removal of nitrogen. Variability in oyster tissue and shell nutrient concentration was low within the dataset, and an assessment of farm location, ploidy, and three common cultivation practices (floating gear, bottom gear, no gear) suggested that a simple regression-based calculation could be applied across all farms within the region. We designed the new, publicly available online Aquaculture Nutrient Removal Calculator tool https://connect.fisheries.noaa.gov/ANRC/ based on this analysis, which uses inputs related to oyster size and harvest number to predict harvest-based nitrogen removal from an eastern oyster farm located within the geographic range of North Carolina to Maine, USA. The tool also produces a report that has been designed to integrate with the US Army Corps of Engineers public interest review process, and similar state-level permitting processes, and provides a succinct summary of the ecological services associated with nutrient removal in eutrophic locations, project-specific values, and citations supporting the calculation of those values.
Journal Article
Pathways between Primary Production and Fisheries Yields of Large Marine Ecosystems
The shift in marine resource management from a compartmentalized approach of dealing with resources on a species basis to an approach based on management of spatially defined ecosystems requires an accurate accounting of energy flow. The flow of energy from primary production through the food web will ultimately limit upper trophic-level fishery yields. In this work, we examine the relationship between yield and several metrics including net primary production, chlorophyll concentration, particle-export ratio, and the ratio of secondary to primary production. We also evaluate the relationship between yield and two additional rate measures that describe the export of energy from the pelagic food web, particle export flux and mesozooplankton productivity. We found primary production is a poor predictor of global fishery yields for a sample of 52 large marine ecosystems. However, chlorophyll concentration, particle-export ratio, and the ratio of secondary to primary production were positively associated with yields. The latter two measures provide greater mechanistic insight into factors controlling fishery production than chlorophyll concentration alone. Particle export flux and mesozooplankton productivity were also significantly related to yield on a global basis. Collectively, our analyses suggest that factors related to the export of energy from pelagic food webs are critical to defining patterns of fishery yields. Such trophic patterns are associated with temperature and latitude and hence greater yields are associated with colder, high latitude ecosystems.
Journal Article
Does Low Temperature Constrain the Growth Rates of Heterotrophic Protists? Evidence and Implications for Algal Blooms in Cold Waters
Literature review and synthesis of growth rates of aquatic protists focused on the role of temperature in the formation of massive annual algal blooms in high-latitude ecosystems. Maximal growth rates of herbivorous protists equaled or exceeded maximal growth rates of phototrophic protists at temperatures above 15°C. Maximal growth rates of herbivorous protists declined more rapidly with decreasing temperature than did those of phototrophic protists, and at the very low temperatures common to high-latitude ecosystems, the maximal growth rates of herbivorous protists were less than half the maximal growth rates of phototrophic protists. Growth rates of herbivorous protists were consistently lower than those of bacterivorous protists and were unrelated to differences in cell volume between the two groups. Linear equations describing the relationship of the natural log of maximal growth rates of bacterivorous and herbivorous protists to temperature were generated and compared to published information for maximal growth rates of phototrophic protists and copepods. The three heterotrophic groups had similar slopes (0.12 for bacterivorous protists, 0.10 for herbivorous protists, and 0.13 for copepods) that were approximately double that of phototrophic protists (0.06). The massive annual algal blooms observed in high latitudes are due in part to a fundamental difference in the relationship between growth and temperature for phototrophic protists and their grazers.
Journal Article
Rationing with time: time-cost ordeals’ burdens and distributive effects
Individuals often face administrative hurdles in attempting to access health care, public programmes, and other legal statuses and entitlements. These ordeals are the products, directly or indirectly, of institutional and policy design choices. I argue that evaluating whether such ordeals are justifiable or desirable instruments of social policy depends on assessing, beyond their targeting effects, the process-related burdens they impose on those attempting to navigate them and these burdens’ distributive effects. I here examine specifically how ordeals that levy time costs reduce and constrain individuals’ free time, and how such time-cost ordeals may thereby create, deepen and compound disadvantages.
Journal Article
Marine bacterial, archaeal and protistan association networks reveal ecological linkages
Microbes have central roles in ocean food webs and global biogeochemical processes, yet specific ecological relationships among these taxa are largely unknown. This is in part due to the dilute, microscopic nature of the planktonic microbial community, which prevents direct observation of their interactions. Here, we use a holistic (that is, microbial system-wide) approach to investigate time-dependent variations among taxa from all three domains of life in a marine microbial community. We investigated the community composition of bacteria, archaea and protists through cultivation-independent methods, along with total bacterial and viral abundance, and physico-chemical observations. Samples and observations were collected monthly over 3 years at a well-described ocean time-series site of southern California. To find associations among these organisms, we calculated time-dependent rank correlations (that is, local similarity correlations) among relative abundances of bacteria, archaea, protists, total abundance of bacteria and viruses and physico-chemical parameters. We used a network generated from these statistical correlations to visualize and identify time-dependent associations among ecologically important taxa, for example, the SAR11 cluster, stramenopiles, alveolates, cyanobacteria and ammonia-oxidizing archaea. Negative correlations, perhaps suggesting competition or predation, were also common. The analysis revealed a progression of microbial communities through time, and also a group of unknown eukaryotes that were highly correlated with dinoflagellates, indicating possible symbioses or parasitism. Possible ‘keystone’ species were evident. The network has statistical features similar to previously described ecological networks, and in network parlance has non-random, small world properties (that is, highly interconnected nodes). This approach provides new insights into the natural history of microbes.
Journal Article
Seasonal Feeding Behavior of Aquaculture Eastern Oysters (Crassostrea virginica) in the Mid-Atlantic
The Eastern Oyster (Crassostrea virginica) is a commercially important aquaculture species and food resource along the Atlantic and Gulf coasts of the USA. In addition to its economic value, oyster aquaculture provides ecological value such as water quality improvement. Oyster filtration is highly variable as filtration behavior is influenced by environmental conditions, oyster size, and oyster energetic demands. However, average rates generated in laboratory experiments are often used to estimate the ecological impact of oyster filtration, and there is a need for field-based, farm-specific estimates of filtration that account for this variation. In this study, field experiments were conducted between September 2020 and September 2021 to estimate seasonal oyster filtration physiology at oyster farms in three different bays in the Mid-Atlantic (Barnegat Bay and Delaware Bay in New Jersey and Rehoboth Bay in Delaware). The physiological activity of oysters at each farm varied such that oysters at Barnegat Bay were the most active and oysters at Rehoboth Bay were the least active. Seasonal physiological trends were observed such that filtration behavior generally increased in warmer months. An increase in physiological activity across all farms was associated with an increase in salinity and temperature, but physiological activity at each farm was associated with a different suite of environmental variables including total particulate matter and the organic content of seston. This study provides a robust dataset which can be incorporated into models estimating ecological filtration rates in the Mid-Atlantic and adds to the growing body of evidence supporting bivalve aquaculture as a nutrient reduction strategy.
Journal Article
Development of a floxed Gabbr2 gene allows for widespread conditional disruption of GABBR2 and recapitulates the phenotype of germline Gabbr2 knockout mice
GABBR1 and GABBR2 are widely expressed in the brain and genetic inhibition of their function leads to neurologic dysfunction and premature death in mice. Given that GABBR1 and GABBR2 heterodimerize to form a functional receptor, global knockout of GABBR1 or GABBR2 results in a similar phenotype, characterized by spontaneous epileptiform activity, hyperlocomotor activity, hyperalgesia, impaired memory and premature death. Both GABBR1 and GABBR2 are expressed in a variety of tissues outside the nervous system and GABA-B receptors have been shown to heterodimerize with other class C GPCRs. However, the neurologic consequences of global GABBR1 or GABBR2 knockout mice have made it difficult to study the effects of loss of GABBR function in other organs. While a conditional knockout for GABBR1 is available, the Gabbr2 gene had not been “floxed”. Therefore, we used CRISPR to insert loxP sites into the Gabbr2 locus in mice. These mice are normal at baseline but when bred with mice expressing Cre-recombinase under the control of the ubiquitously expressed Actin gene promoter, Gabbr2 lox/lox mice recapitulate the phenotype of global GABBR2 knockout mice demonstrating alterations throughout the brain, including the cortex, hippocampus and cerebellum. We document abnormal neurological function, increased neuronal cell death, changes in neuronal architecture, and premature death. These mice should be useful tools to study cell type-specific loss of GABBR2 function in the brain and other organs.
Journal Article