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The thymus plays a pivotal role in generating a highly-diverse repertoire of T lymphocytes while preventing autoimmunity. Thymus seeding progenitors (TSPs) are a heterogeneous group of multipotent progenitors that migrate to the thymus via CCR7 and CCR9 receptors. While NOTCH guides thymus progenitors toward T cell fate, the absence or disruption of NOTCH signaling renders the thymus microenvironment permissive to other cell fates. Following T cell commitment, developing T cells undergo multiple selection checkpoints by engaging with the extracellular matrix, and interacting with thymic epithelial cells (TECs) and other immune subsets across the different compartments of the thymus. The different selection checkpoints assess the T cell receptor (TCR) performance, with failure resulting in either repurposing (agonist selection), or cell death. Additionally, environmental cues such as inflammation and endocrine signaling induce acute thymus atrophy, contributing to the demise of most developing T cells during thymic selection. We discuss the occurrence of acute thymus atrophy in response to systemic inflammation. The thymus demonstrates high plasticity, shaping inflammation by abrogating T cell development and undergoing profound structural changes, and facilitating regeneration and restoration of T cell development once inflammation is resolved. Despite the challenges, thymic selection ensures a highly diverse T cell repertoire capable of discerning between self and non-self antigens, ultimately egressing to secondary lymphoid organs where they complete their maturation and exert their functions.

   

Utilizing assays that assess specific T-cell-mediated immunity against cytomegalovirus (CMV) holds the potential to enhance personalized strategies aimed at preventing and treating CMV in organ transplantation. This includes improved risk stratification during transplantation compared to relying solely on CMV serostatus, as well as determining the optimal duration of antiviral prophylaxis, deciding on antiviral therapy when asymptomatic replication occurs, and estimating the risk of recurrence. In this review, we initially provide an overlook of the current concepts into the immune control of CMV after transplantation. We then summarize the existent literature on the clinical experience of the use of immune monitoring in organ transplantation, with a particular interest on the outcomes of interventional trials. Current evidence indicates that cell-mediated immune assays are helpful in identifying patients at low risk for replication for whom preventive measures against CMV can be safely withheld. As more data accumulates from these and other clinical scenarios, it is foreseeable that these assays will likely become part of the routine clinical practice in organ transplantation.

Seaweed extracts are used as nutrient supplements, biostimulants, or biofertilizers in agriculture and horticulture to increase plant growth and yield. In this study, we examined the effect of liquid seaweed extracts (LSEs) made from Ulva lactuca, Caulerpa sertularioides, Padina gymnospora, and Sargassum liebmannii as biostimulants on the germination and growth of tomato (Solanum lycopersicum) under laboratory and greenhouse conditions using foliar and soil drench applications of LSEs. We assessed LSEs at different concentrations (0.2, 0.4, and 1.0 %) on germination parameters (percentage, index, mean time, energy, and seedling vigor index) and growth parameters (plumule length, radical length, shoot length, root length, fresh weight, and dry weight) of tomato seedlings. Our results indicate that seeds treated with LSEs of U. lactuca and P. gymnospora at lower concentrations (0.2 %) showed enhanced germination (better response in germination rate associated with lower mean germination time, high germination index and germination energy, and consequently greater seedling vigor and greater plumule and radicle length). Application as a soil drench was found to be more effective in influencing the height of the plant (up to 79 cm) than the foliar spray application (75 cm). Plants receiving LSEs of U. lactuca and P. gymnospora showed increased shoot length, root length, and weight. Furthermore, U. lactuca and P. gymnospora were found to be more successful and better candidates for developing effective biostimulants to improve the growth of tomato plants. This study provides important information on the identification and utilization of Mexican seaweed resources for agriculture and is the first study to report on the uses of these seaweeds as a source of liquid extracts as biostimulants in agriculture.

The SOS (salt overly sensitive) hypersensitivity pathway is a key mechanism for maintaining ion homeostasis at the cellular level and conferring plant resistance and tolerance to salt stress. Its components interact directly and indirectly with various proteins and regulatory mechanisms. We conducted the first coevolutionary analysis of two key proteins of the SOS interaction network (SOS1 and NHX1) across a broad taxonomic range of plant species, including halophytes and glycophytes. Due to sequence availability, our analyses primarily support intramolecular coevolutionary patterns, with preliminary indications of possible intermolecular associations. We assessed the functional and topological relevance of coevolving sites. Six coevolving amino acid pairs were identified in SOS1, and two in NHX1. Except for two residues in SOS1, all sites were associated with functionally and topologically conserved positions. In SOS1, the most relevant coevolving pairs were located in the cytoplasmic domain, which controls the activity of the Na+/H+ antiporter and plays a critical role in maintaining cellular Na+ homeostasis, whereas in NHX1, they were in the transmembrane domain. Our findings reveal previously unexplored molecular relationships in these critical ion homeostasis proteins. Understanding these interactions, which have significant implications for biotechnology and sustainable agriculture, can aid crop improvement and enhance agricultural sustainability under saline conditions.

Background High-density Lipoprotein (HDL) attenuates endothelial cell apoptosis induced by different cell-death stimuli such as oxidation or growth factor deprivation. HDL is the main plasma carrier of the bioactive lipid sphingosine 1-phosphate (S1P), which it is a signaling molecule that promotes cell survival in response to several apoptotic stimuli. In HDL, S1P is bound to Apolipoprotein M (ApoM), a Lipocalin that is only present in around 5% of the HDL particles. The goal of this study is to characterize ApoM-bound S1P role in endothelial apoptosis protection and the signaling pathways involved. Methods Human umbilical vein endothelial cells (HUVEC) cultures were switched to serum/grow factor deprivation medium to induce apoptosis and the effect caused by the addition of ApoM and S1P analyzed. Results The addition of HDL +ApoM or recombinant ApoM-bound S1P promoted cell viability and blocked apoptosis, whereas HDL -ApoM had no protective effect. Remarkably, S1P exerted a more potent anti-apoptotic effect when carried by ApoM as compared to albumin, or when added as free molecule. Mechanistically, cooperation between S1P1 and S1P3 was required for the HDL/ApoM/S1P-mediated anti-apoptotic ability. Furthermore, AKT and ERK phosphorylation was also necessary to achieve the anti-apoptotic effect of the HDL/ApoM/S1P complex. Conclusions Altogether, our results indicate that ApoM and S1P are key elements of the anti-apoptotic activity of HDL and promote optimal endothelial function.

Infectious complications remain a leading cause of morbidity and mortality after solid organ transplantation (SOT), and largely depend on the net state of immunosuppression achieved with current regimens. Cytomegalovirus (CMV) is a major opportunistic viral pathogen in this setting. The application of strategies of immunological monitoring in SOT recipients would allow tailoring of immunosuppression and prophylaxis practices according to the individual's actual risk of infection. Immune monitoring may be pathogen‐specific or nonspecific. Nonspecific immune monitoring may rely on either the quantification of peripheral blood biomarkers that reflect the status of a given arm of the immune response (serum immunoglobulins and complement factors, lymphocyte sub‐populations, soluble form of CD30), or on the functional assessment of T‐cell responsiveness (release of intracellular adenosine triphosphate following a mitogenic stimulus). In addition, various methods are currently available for monitoring pathogen‐specific responses, such as CMV‐specific T‐cell‐mediated immune response, based on interferon‐γ release assays, intracellular cytokine staining or main histocompatibility complex‐tetramer technology. This review summarizes the clinical evidence to date supporting the use of these approaches to the post‐transplant immune status, as well as their potential limitations. Intervention studies based on validated strategies for immune monitoring still need to be performed.

We launched an array of nine freely floating submarine seismometers near the Galápagos islands, which remained operational for about two years. P and PKP waves from regional and teleseismic earthquakes were observed for a range of magnitudes. The signal-to-noise ratio is strongly influenced by the weather conditions and this determines the lowest magnitudes that can be observed. Waves from deep earthquakes are easier to pick, but the S/N ratio can be enhanced through filtering and the data cover earthquakes from all depths. We measured 580 arrival times for different raypaths. We show that even such a limited number of data gives a significant increase in resolution for the oceanic upper mantle. This is the first time an array of floating seismometers is used in seismic tomography to improve the resolution significantly where otherwise no seismic information is available. We show that the Galápagos Archipelago is underlain by a deep (about 1900 km) 200–300 km wide plume of high temperature, with a heat flux very much larger than predicted from its swell bathymetry. The decrease of the plume temperature anomaly towards the surface indicates that the Earth’s mantle has a subadiabatic temperature gradient.

Urban seismology has become an active research field in the recent years, both with seismological objectives, as obtaining better microzonation maps in highly populated areas, and with engineering objectives, as the monitoring of traffic or the surveying of historical buildings. We analyze here the seismic records obtained by a broad-band seismic station installed in the ICTJA-CSIC institute, located near the center of Barcelona city. Although this station was installed to introduce visitors to earth science during science fairs and other dissemination events, the analysis of the data has allowed to infer results of interest for the scientific community. The main results include the evidence that urban seismometers can be used as a easy-to-use, robust monitoring tool for road traffic and subway activity inside the city. Seismic signals generated by different cultural activities, including rock concerts, fireworks or football games, can be detected and discriminated from its seismic properties. Beside the interest to understand the propagation of seismic waves generated by those rather particular sources, those earth shaking records provide a powerful tool to gain visibility in the mass media and hence have the opportunity to present earth sciences to a wider audience.