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Indonesia, located in Southeast Asia, is the world’s largest tropical island country. It is globally recognized as a unique center of biodiversity in the Asian–Australian transitional zone. To date, however, no national plant checklist of Indonesia has been published. Here, we collected botanical information on the flora of Indonesia and presented for the first time a checklist of known native species of vascular plants in the country. Our checklist included 30,466 species belonging to 2968 genera and 317 families, representing 8.7% of the 351,180 vascular plant species worldwide. Among the seven regions, Sumatra had the highest number of species at 10,902, followed by Indonesian New Guinea (9935), Java (9289), Kalimantan (9191), Sulawesi (7048), Maluku (5294), and Lesser Sunda Islands (4514). In contrast, Indonesian New Guinea had a much higher proportion of locally endemic species than other regions (59%). The seven regions were divided into three phytogeographical areas: the Sunda Shelf, the Sahul Shelf, and the Wallacea, based on similarities in floristic composition. Our checklist for Indonesia provides basic information for biodiversity conservation and associated research.

Indonesia is one of the most biodiverse countries in the world, with a rich variety of plant species present. Bergera koenigii is a plant with significant ethnobotanical potential. Bergera koenigii in Peusangan, Bireuen Regency, Aceh Province, is known as temurui. This study aimed to identify the use of temurui in the daily lives of the Peusangan community. The Peusangan people traditionally use temurui as a culinary ingredient, food flavoring, traditional medicine, and room fragrance. This study was conducted in the Peusangan sub-district of the Bireuen Regency in the Aceh Province. The method used in this research is exploration and observation using the Participatory Rural Appraisal (PRA) technique, which is an assessment oriented towards the process of involvement and participation of the community in the research. Respondents were selected by purposive sampling, and the sample size was 55. The results showed that the local community uses temurui for culinary ingredients (3,63%), food flavoring (100%), traditional medicine (9,09%), and room fragrance (3,63%). The leaf is the plant part most commonly utilized by the community. These findings highlight the cultural importance and practical versatility of temurui ( Bergera koenigii ) in daily life, supporting its role in ethnobotanical conservation.

Societal Impact Statement We found evidence that larger fruited plant species are more likely to be found in aseasonal wet areas of Malesia. These areas are likely to be impacted by increasing human encroachment, which threatens both large‐fruited species and the large fauna that are most likely responsible for their dispersal. This synergistic threat could drive the loss of fruit‐crop relatives that potentially have key traits for resilient fruit crops of the future. Summary It is unclear how fruit size determines distributions of megadiverse tropical flora. Energetic constraints of ecosystems suggest plant species with larger fruit should be found in the higher productivity, aseasonal wet tropics. However, the probability of seed dispersal over large scales should be increased by fruits being smaller, due to being available to a greater number of dispersal agents. We use a Bayesian phylogenetic model of species occurrence for >3400 species in Malesia to test how fruit size and environment interact to determine species distributions across the archipelago. We show that larger fruited species are more likely to occur in aseasonal wet areas. We also found that smaller fruit size was associated with species occurrence in more mountainous areas. Fruit size interacts with environmental variables to shape plant distributions across the megadiverse Malesian islands. The evolutionary processes that influence the patterns we have observed require further examination. We found evidence that larger fruited plant species are more likely to be found in aseasonal wet areas of Malesia. These areas are likely to be impacted by increasing human encroachment, which threatens both large‐fruited species and the large fauna that are most likely responsible for their dispersal. This synergistic threat could drive the loss of fruit‐crop relatives that potentially have key traits for resilient crops of the future.

Species radiations, despite immense phenotypic variation, can be difficult to resolve phylogenetically when genetic change poorly matches the rapidity of diversification. Genomic potential furnished by palaeopolyploidy, and relative roles for adaptation, random drift and hybridisation in the apportionment of genetic variation, remain poorly understood factors. Here, we study these aspects in a model radiation, Syzygium , the most species-rich tree genus worldwide. Genomes of 182 distinct species and 58 unidentified taxa are compared against a chromosome-level reference genome of the sea apple, Syzygium grande . We show that while Syzygium shares an ancient genome doubling event with other Myrtales, little evidence exists for recent polyploidy events. Phylogenomics confirms that Syzygium originated in Australia-New Guinea and diversified in multiple migrations, eastward to the Pacific and westward to India and Africa, in bursts of speciation visible as poorly resolved branches on phylogenies. Furthermore, some sublineages demonstrate genomic clines that recapitulate cladogenetic events, suggesting that stepwise geographic speciation, a neutral process, has been important in Syzygium diversification. The relative importance of the mechanisms underlying species radiation remains unclear. Here, the authors combine reference genome assembly and population genetics analyses to show that neutral forces have contributed to the radiation of the most species-rich tree genus Syzygium .

Daemonorops siberutensis (Arecaceae), belonging to section Piptospatha is described as new from Siberut Island.

Tropical forests occupy small coral atolls to the vast Amazon basin. They occur across bioregions with different geological and climatic history. Differences in area and bioregional history shape species immigration, extinction and diversification. How this effects local diversity is unclear. The Indonesian archipelago hosts thousands of tree species whose coexistence should depend upon these factors. Using a novel dataset of 215 Indonesian forest plots, across fifteen islands ranging in area from 120 to 785 000 km2, we apply Gaussian mixed effects models to examine the simultaneous effects of environment, earthquake proximity, island area and bioregion upon tree diversity for trees ≥ 10 cm diameter at breast height. We find that tree diversity declines with precipitation seasonality and increases with island area. Accounting for the effects of environment and island area we show that the westernmost bioregion Sunda has greater local diversity than Wallacea, which in turn has greater local diversity than easternmost Sahul. However, when the model includes geological activity (here proximity to major earthquakes), bioregion differences are reduced. Overall, results indicate that multi‐scale, current and historic effects dictate tree diversity. These multi‐scale drivers should not be ignored when studying biodiversity gradients and their impacts upon ecosystem function.

A new species of the rattan genus Daemonorops is recorded for Java, Daemonorops sedisspirituum. D. sedisspirituum is closely allied to D. hirsuta and D. oblonga but differs in stem size, sheath armature, and seed surface.

Societal Impact Statement: Collections of dried plant specimens (herbaria) provide an invaluable resource for the study of many areas of scientific interest and conservation globally. Digitisation increases access to specimens and metadata, enabling efficient use across a broad spectrum of research. The value of physical specimens is enhanced by digitisation, but these specimens remain fundamental for the study of traits not yet captured digitally. We investigate the requirements for physical access and the curation and facilities needed to maximise specimen use and value. We present recommendations to ensure that specimens and data are both fully accessible to support research into global challenges. Summary: Herbarium management has traditionally focused on providing direct access to the physical specimens, but this scope must now expand to also embrace digital collections. Advances in technologies such as artificial intelligence and high-throughput genomics are increasing the amount of information that can be extracted from specimens, and it is becoming commonplace to provide digital access to specimen images and collection metadata. These developments are facilitating the use of herbarium collections to inform conservation planning and in studies plant and fungal taxonomy, distribution and evolution. This paper examines how herbaria are transitioning from physical specimen-centric collection management practices to increasingly digitised curation, and the effects that digital availability of data are having on demands for physical access. We provide a set of recommendations to institutions holding herbarium collections. We emphasise the critical importance of further digitising herbaria of all sizes; the need to ensure that historical inequalities in deposition of specimens are not perpetuated; and that the capacity to utilise new technologies must be further developed, especially in biodiverse regions from which most herbarium collections are derived. To improve access to collection data, herbarium managers need to more rigorously adopt community-agreed data standards, and more strongly support open access platforms such as the Global Biodiversity Information Facility either directly or through regional coalitions. As digitisation and open data access increase, herbaria will need to offer users with seamless hybrid access to physical and digital records while continuing to develop their collections to advance research and conservation.

Effective implementation of the Global Biodiversity Framework and Global Strategy for Plant Conservation depends on accurate species distribution data. Current vascular plant distribution data, while crucial for understanding terrestrial ecosystems, is often sparse and biased and requires significant expansion. This study developed a scalable approach to prioritize areas for plant occurrence data acquisition, adaptable to national priorities and providing a framework for botanical institutions to coordinate efforts and allocate resources. Global. Using a Technique for Order Preference by Similarity to Ideal Solution (TOPSIS) analysis, we prioritized areas based on: (a) ecosystem service value; (b) floristic value threatened by climate or land-use change; and (c) uncertainty in species richness estimates, stratified by biome and region. Regional prioritization maps for Africa & Madagascar; East, South and Southeast Asia; Siberia and the Russian Far East; South America; and North & Central America were reviewed by botanical experts for validation. Scalability was assessed by comparing regional and global analyses. Data-driven priority maps, divided into tree-dominated and grassland/deforested areas, largely received expert support. High similarity between global and regional maps demonstrated scalability. Our approach provides a framework for supporting national implementation of the Global Biodiversity Framework. Variables and their weights can be tailored to national or local needs. The method’s flexibility and adaptability extend to other taxonomic groups and objectives, such as protected area selection By prioritizing data acquisition, whether field-based or digital, this research promotes the efficient use of resources. A key advantage of this approach is its capacity to systematically translate expert opinion into explicit and quantitative criteria, which in turn facilitates clear communication with policymakers and funders.

Herbarium collections shape our understanding of the world’s flora and are crucial for addressing global change and biodiversity conservation. The formation of such natural history collections, however, are not free from sociopolitical issues of immediate relevance. Despite increasing efforts addressing issues of representation and colonialism in natural history collections, herbaria have received comparatively less attention. While it has been noted that the majority of plant specimens are housed in the global North, the extent of this disparity has not been rigorously quantified to date. Here, by analyzing over 85 million specimen records and surveying herbaria across the globe, we assess the colonial legacy of botanical collections and how we may move towards a more inclusive future. We demonstrate that colonial exploitation has contributed to an inverse relationship between where plant biodiversity exists in nature and where it is housed in herbaria. Such disparities persist in herbaria across physical and digital realms despite overt colonialism having ended over half a century ago, suggesting ongoing digitization and decolonization efforts have yet to alleviate colonial-era discrepancies. We emphasize the need for acknowledging the inconvenient history of herbarium collections and the implementation of a more equitable, global paradigm for their collection, curation, and use.