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Periphyton blooms may be increasing in oligotrophic lakes due to warming water temperatures and increased nutrient loads associated with climate change. Such blooms decrease both water quality and the aesthetic value of nearshore areas, but identifying the mechanisms driving periphyton blooms in situ is complex. We conducted laboratory experiments using periphyton‐covered rocks collected from the nearshore of oligotrophic Lake Tahoe, CA, to examine (a) baseline seasonal variability in periphyton biomass and metabolism, (b) effects of warming, nutrients, and their interaction on periphyton metabolism, and (c) seasonal variability in these effects on periphyton metabolism. We quantified rates of gross primary production (GPP), ecosystem respiration (ER), and net ecosystem production (NEP) under 2 nutrient treatments (ambient and enriched) and 4 warming treatments (ambient, +3°C, +6°C, and +9°C above ambient). Overall, warming stimulated GPP, NEP, and ER (Q10 temperature coefficients of 1.6, 1.4, and 2 respectively), with stronger effects during colder months. Warming also stimulated metabolic rates in the absence of nutrient additions. Short‐term nutrient effects were more variable across seasons and alternated between depressing or stimulating metabolic rates (ranged from a 9%–11% decrease in rates to a 13%–27% increase across seasons). The relative importance of warming and nutrient effects were seasonally dependent as nutrients stimulated metabolic rates more than warming in October, and warming more so than nutrients in February and November. These results indicate that climate‐driven alterations to temperature and nutrient regimes will have important and seasonally explicit consequences for the ecosystem energetics and periphyton community structure of oligotrophic lakes.

Wildfire smoke often covers areas larger than the burned area, yet the impacts of smoke on nearby aquatic ecosystems are understudied. In the summer of 2018, wildfire smoke covered Castle Lake (California, USA) for 55 days. We quantified the influence of smoke on the lake by comparing the physics, chemistry, productivity, and animal ecology in the prior four years (2014–2017) to the smoke year (2018). Smoke reduced incident ultraviolet-B (UV-B) radiation by 31% and photosynthetically active radiation (PAR) by 11%. Similarly, underwater UV-B and PAR decreased by 65 and 44%, respectively, and lake heat content decreased by 7%. While the nutrient limitation of primary production did not change, shallow production in the offshore habitat increased by 109%, likely due to a release from photoinhibition. In contrast, deep-water, primary production decreased and the deep-water peak in chlorophyll a did not develop, likely due to reduced PAR. Despite the structural changes in primary production, light, and temperature, we observed little significant change in zooplankton biomass, community composition, or migration pattern. Trout were absent from the littoral-benthic habitat during the smoke period. The duration and intensity of smoke influences light regimes, heat content, and productivity, with differing responses to consumers.

Lake ecosystems and the services that they provide to people are profoundly influenced by dissolved organic matter derived from terrestrial plant tissues. These terrestrial dissolved organic matter (tDOM) inputs to lakes have changed substantially in recent decades, and will likely continue to change. In this paper, we first briefly review the substantial literature describing tDOM effects on lakes and ongoing changes in tDOM inputs. We then identify and provide examples of four major challenges which limit predictions about the implications of tDOM change for lakes, as follows: First, it is currently difficult to forecast future tDOM inputs for particular lakes or lake regions. Second, tDOM influences ecosystems via complex, interacting, physical-chemical-biological effects and our holistic understanding of those effects is still rudimentary. Third, non-linearities and thresholds in relationships between tDOM inputs and ecosystem processes have not been well described. Fourth, much understanding of tDOM effects is built on comparative studies across space that may not capture likely responses through time. We conclude by identifying research approaches that may be important for overcoming those challenges in order to provide policy- and management-relevant predictions about the implications of changing tDOM inputs for lakes.

The goals of our study were to (1) quantify production of CO2 during winter ice‐cover in arctic lakes, (2) develop methodologies which would enable prediction of CO2 production from readily measured variables, and (3) improve understanding of under‐ice circulation as it influences the distribution of dissolved gases under the ice. To that end, we combined in situ measurements with profile data. CO2 production averaged 20 mg C m−2 d−1 in a 3 m deep lake and ∼ 45 mg C m−2 d−1 in four larger lakes, similar to experimental observations at temperatures below 4°C. CO2 production was predicted by the initial rate of loss of oxygen near the sediments at ice‐on and by the full water column loss of oxygen throughout the winter. The time series data also showed the lake‐size and time dependent contribution of sediment respiration to under‐ice circulation and the decreased near‐bottom flows enabling anoxia and CH4 accumulation.

Mountain lakes experience extreme interannual climate variation as well as rapidly warming air temperatures, making them ideal systems to understand lake‐climate responses. Snowpack and water temperature are highly correlated in mountain lakes, but we lack a complete understanding of underlying mechanisms. Motivated by predicted declines in snowfall with future temperature increases, we investigated how surface heat fluxes and lake warming responded to variation in snowpack, ice‐off, and summer weather patterns in a high elevation lake in the Sierra Nevada, California. Ice‐off timing determined the phenology of lake exposure to solar radiation, and was the dominant mechanism linking snowpack to lake temperature. The relative importance of heat loss fluxes (longwave radiation, latent and sensible heat exchange) varied among wet and dry years. Declines in snowpack and ice cover in mountain systems will reduce variability in lake thermal responses and increase the responsiveness of lake warming to atmospheric forcing.

Our objectives were to determine how temperatures in mountain lakes respond to changes in climate and to characterize how their responses are mediated by landscape or lake morphometric factors. Our analysis combines the use of high‐frequency climate and lake temperature data from 1983 to 2016 in a high‐elevation catchment in the Sierra Nevada of California with summer water temperature data from a set of 18 additional lakes scattered throughout the range. Average annual air temperatures warmed at 0.63°C decade−1, but variation in lake temperature was driven primarily by amount of precipitation as snow. By regulating the duration of ice cover and volume of inflowing spring snowmelt, variation in snowpack size accounted for 93% of variation in summer epilimnetic temperatures. The effect of snow on lake temperatures was mediated by variation in elevation and lake depth at landscape scales, creating a predictable mosaic of lake sensitivities to climate warming.

Environmental drivers such as climate change are responsible for extreme events that are critically altering freshwater resources across the planet. In the continental US, these events range from increases in the frequency and duration of droughts and wildfires in the West, to increasing precipitation and floods that are turning lakes and reservoirs brown in the East. Such events transform and transport organic carbon in ways that affect the exposure of ecosystems to ultraviolet (UV) radiation and visible light, with important implications for ecosystem services. Organic matter dissolved in storm runoff or released as black carbon in smoke selectively reduces UV radiation exposure. In contrast, droughts generally increase water transparency, so that UV radiation and visible light penetrate to greater depths. These shifts in water transparency alter the potential for solar disinfection of waterborne parasites, the production of carcinogenic disinfection byproducts in drinking water, and the vertical distribution of zooplankton that are a critical link in aquatic food webs.

A series of vertical profiles of dissolved oxygen (DO) collected periodically over two consecutive ice-free seasons in an oligotrophic high-elevation lake (Emerald Lake, California) were used to investigate volumetric and areal rates of gross primary production (GPP), community respiration (CR), and net ecosystem production (NEP). Diel patterns in DO did not weaken with depth in this lake, where the entire 10-m water column was within the euphotic zone and where a deep chlorophyll a (Chl a) maximum was common during periods of thermal stratification. During stratification, both GPP and CR increased with depth, and heterotrophy (NEP < 0) tended to occur below the thermocline in association with higher Chl a and particulate matter concentrations. With the onset of autumn mixing each year, vertical gradients in metabolism weakened or disappeared and the entire water column was autotrophic. Net autotrophy over the growing season was confirmed using three methods of estimating whole-lake metabolism. During periods of stratification, flux across the thermocline, where eddy diffusivities were near molecular, was small (4% of total epilimnetic fluxes), while within the hypolimnion, where stratification was weaker and eddy diffusivities larger, fluxes between strata were more substantial (12% of total fluxes). For this lake and other small lakes with low wind speeds and Lake numbers near 10, mixing due to turbulence should be included in computations of metabolism within the hypolimnion. However, single-station measurements from within the epilimnion provide a reasonable estimate of seasonal metabolism, especially in the autumn when the lake is mixing on a diel basis.

Scientific Significance Statement Metabolic stoichiometry predicts that dissolved oxygen (O2) and carbon dioxide (CO2) in aquatic ecosystems should covary inversely; however, field observations often diverge from theoretical expectations. Here, we propose a suite of metrics describing this O2 and CO2 decoupling and introduce a conceptual framework for interpreting these metrics within aquatic ecosystems. Within this framework, we interpret cross‐system patterns of high‐frequency O2 and CO2 measurements in 11 northern lakes and extract emergent insights into the metabolic behavior and the simultaneous roles of chemical and physical forcing in shaping ecosystem processes. This approach leverages the power of high‐frequency paired O2–CO2 measurements, and yields a novel, integrative aquatic system typology which can also be applicable more broadly to streams and rivers, wetlands and marine systems.

Many marine invertebrates with complex life cycles produce planktonic larvae that experience environmental conditions different from those encountered by adults. Factors such as temperature and food, known to impact the larval period, can also affect larval size and consequently the size of newly settled juveniles. After documenting natural variation in the size of cyprids (the final larval stage) of the barnacle Balanus glandula, we experimentally manipulated temperature and food given to larvae to produce cyprids of differing sizes but within the size range of cyprids found in the field. In a set of trials in which larvae of B. glandula were raised on full or reduced rations in the laboratory and subsequently outplanted into the field as newly metamorphosed juveniles, we explored the effects of larval nutrition and size on juvenile performance. Larvae that received full rations throughout their feeding period produced larger cyprids (with more lipid and protein). These larger cyprids grew faster as juveniles and sometimes survived better in the field than juveniles from larvae that had their food ration reduced in the last feeding instar. For naturally settling barnacles brought into the laboratory within 2 days of settlement and fed, we found that initial juvenile size was a good predictor of juvenile size even after 2 weeks of growth. By manipulating food given to juveniles that were derived from larvae fed either full or reduced rations, we found that larval nutritional effects persisted in juveniles for 2–3 times the period that larvae experienced altered food rations.