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During our research on the diversity of diatoms and green microalgae from Egypt, four new-to-science, newly recorded, and poorly known species were retrieved from different Egyptian habitats. The new benthic diatom species Halamphora shaabanii A.A. Saber, El-Sheekh, Levkov, H. Saber et Cantonati sp. nov., which could not be identified using the currently available literature, was described from the high-conductivity, oasis lake Abu Nuss in the El-Farafra Oasis, located in the Western Desert of Egypt, employing both light (LM) and scanning electron (SEM) microscopy observations. A detailed comparison of the biometrically distinctive traits, and ecological preferences, of this new diatom species revealed sufficient differentiations from its morphologically most closely related species: H. atacamana, H. caribaea, H. ectorii, H. gasseae, H. halophila, H. mosensis, H. poianensis, and H. vantushpaensis. Ecologically, Halamphora shaabanii can tolerate relatively high nutrients (N and P) and prefers saline inland environments with NaCl water types. The araphid diatom Pseudostaurosiropsis geocollegarum was observed in the epilithic diatom assemblages of the River Nile Damietta Branch and identified on the basis of LM and SEM. From an ecological standpoint, P. geocollegarum seems to prefer elevated nutrient concentrations (meso-eutraphentic species), reflecting different human influences on the freshwater River Nile Damietta Branch. Based on the available literature, this is the first documentation of this freshwater diatom species for Egypt, and the second record for the African continent. Two green motile microalgae, Chlamydomonas proboscigera and Gonium pectorale, were isolated and identified from the terrestrial biomes of the arid habitat “Wadi El-Atshan” in the Eastern Desert of Egypt. C. proboscigera is reported herein for the first time in the Egyptian algal flora, while G. pectorale is poorly documented in the available literature. In light of our findings, the Egyptian habitats, particularly the isolated desert ecosystems, are interesting biodiversity hotspots and have a richer algal microflora than earlier anticipated. Furthermore, more in-depth taxonomic studies, using a combined polyphasic approach, are needed not only to foster our knowledge of the Egyptian and African algal and cyanobacterial diversity and biogeography, but also to be further used in applied environmental sciences.

Spirulina platensis has roles in biotechnological product advancement due to its safety for humans and animals. Analysis of S. platensis extract by high-performance liquid chromatography reflected the presence of 14 phenolic and flavonoid compounds with different concentrations such as ellagic acid (333 µg/g), gallic acid (294 µg/g), methyl gallate (147 µg/g), naringenin (144 µg/g), and chlorogenic acid (142 µg/g). The isolated Aspergillus flavus from silage of maize was tested to evaluate the effect of S. platensis extract on aflatoxins B1, B2, G1, and G2 production. The treated silage with S. platensis extract showed the presence of 37±0.33 ppb, 0.59±0.16 ppb, 0.26±0.22 ppb, and 0.21±0.18 ppb compared to un-treated silage that showed 3.14±0.15 ppb, 0.81±0.08 ppb, 0.46±0.05 ppb, and 0.26±0.23 ppb aflatoxins of B1, B2, G1, and G2. These results were shown on the 10th day of incubation. On the 15th day of incubation, the treated silage showed less mycotoxins than un-treated silage. At different incubation periods, glucosamine was estimated as a growth development biomarker. The content of glucosamine was inhibited as a result of the effect of S. platensis extract on fungus growth with 53.71%, 49.19%, 47.84%, 38.47%, and 35.72% inhibition on the 3rd, 6th, 9th, 12th, and 15th day.

Chitinolytic activity and antibiosis are gaining prominence in various biotechnological fields. Dead fungal biomass (DFB) was used as a mycostimulator of chitinase production and antibiosis by Aspergillus fumigatus. The presence of DFB stimulated the synthesis of various secondary metabolites by A. fumigatus that were detected by gas chromatography-mass spectrometry analysis such as 6,8-Di-C-á-glucosylluteolin; bistrimethylsilyl N-acetyl eicosasphinga-4,11-dienine; curan-17-oic acid, 19,20-dihydroxy-, methyl ester, (19S)-; spiro[5à-androstane-3,2′-thiazolidine; retinal; Androsta-1,4-dien-3-one; Panaxydol; Costunolide; Cyclo-(glycyl-L-tyrosyl); and 2-amino ethane thiolsulfuric acid. Chitinase activity was 42.9 Units/mL with the presence DFB, where it was 10.3 Units/mL without DFB. The maximum activity of chitinase was observed at 1.5 g of dead fungal biomass, at 4 h, 50 °C and pH 6. Thermodynamic properties showed ∆H° and ∆S° values of 126 KJ mol-1 and 432 J mol-1 K-1, respectively, indicating an endothermic reaction up to 60 °C. Deviation in ∆G° values confirmed that the reaction at 10 to 20 °C is a nonspontaneous reaction, and at 30 to 60 °C the reaction has a spontaneous nature. DFB encouraged the antimicrobial activity against Pseudomonas aeruginosa, Escherichia coli, Bacillus subtilis, Aspergillus fumigatus, Mucor circinelloides, and Candida albicans with 2.3, 2.2, 2.8, 0.8, 0.7, and 2.2 mm inhibition zones, respectively.

Algal blooms at the major water treatment plants in Egypt have been reported since 2006. While previous studies focused on algal types and their correlation with disinfection by-products, correlation between raw water quality and algal blooms were not explored. Therefore, a survey of Nile water quality parameters at a major water intake in the Greater Cairo Urban Region was conducted from December 2011 to November 2012. Bench-scale experiments were conducted to evaluate the effectiveness of the conventional chloride/alum treatment compared with combined Cl/permanganate pre-oxidation with Al and Fe coagulants during the outbreak period. Addition of permanganate (0.5 mg/L) significantly reduced the chlorine demand from 5.5 to 2.7 mg/L. The applied alum coagulant dose was slightly reduced while residual Al was reduced by 27% and the algal count by 50% in the final treated waters. Applying ferric chloride and ferric sulfate as coagulants to waters treated with the combined pre-oxidation procedure effectively reduced algal count by 60% and better the total organic carbon reduction and residual aluminum in the treated water. Multivariate statistical analysis was used to identify the relationship between water quality parameters and occurrence of algae and to explain the impact of coagulants on the final water quality.