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"Sander, Rolf"
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Compilation of Henry's law constants (version 5.0.0) for water as solvent
2023
Many atmospheric chemicals occur in the gas phase as well as in liquid cloud droplets and aerosol particles. Therefore, it is necessary to understand their distribution between the phases. According to Henry’s law, the equilibrium ratio between the abundances in the gas phase and in the aqueous phase is constant for a dilute solution. Henry’s law constants of trace gases of potential importance in environmental chemistry have been collected and converted into a uniform format. The compilation contains 46 434 values of Henry’s law constants for 10 173 species, collected from 995 references. It is also available on the internet at https://www.henrys-law.org (last access: October 2023). This article is a living review that supersedes the now obsolete publication by Sander (2015).
Journal Article
The community atmospheric chemistry box model CAABA/MECCA-4.0
by
Cabrera-Perez, David
,
Huijnen, Vincent
,
Niemeyer, Kyle E
in
Atmospheric chemistry
,
Chemical reactions
,
Chemistry
2019
We present version 4.0 of the atmospheric chemistry box model CAABA/MECCA that now includes a number of new features: (i) skeletal mechanism reduction, (ii) the Mainz Organic Mechanism (MOM) chemical mechanism for volatile organic compounds, (iii) an option to include reactions from the Master Chemical Mechanism (MCM) and other chemical mechanisms, (iv) updated isotope tagging, and (v) improved and new photolysis modules (JVAL, RADJIMT, DISSOC). Further, when MECCA is connected to a global model, the new feature of coexisting multiple chemistry mechanisms (PolyMECCA/CHEMGLUE) can be used. Additional changes have been implemented to make the code more user-friendly and to facilitate the analysis of the model results. Like earlier versions, CAABA/MECCA-4.0 is a community model published under the GNU General Public License.
Journal Article
An Adaptive Auto‐Reduction Solver for Speeding Up Integration of Chemical Kinetics in Atmospheric Chemistry Models: Implementation and Evaluation in the Kinetic Pre‐Processor (KPP) Version 3.0.0
by
Yantosca, Robert M.
,
Jacob, Daniel J.
,
Sander, Rolf
in
adaptive mechanism reduction
,
atmospheric chemical mechanism
,
Atmospheric chemistry
2023
Kinetic integration of large and stiff chemical mechanisms is a computational bottleneck in models of atmospheric chemistry. It requires implicit solution of the coupled system of kinetic differential equations with time‐consuming construction and inversion of the Jacobian matrix. We present here a new version of the Kinetic Pre‐Processor (KPP 3.0.0) for fast integration of chemical kinetics featuring a range of improvements over previous versions in performance, diagnostics, versatility, and community openness. KPP 3.0.0 includes a new adaptive auto‐reduction solver to decrease the size of any mechanism locally and on the fly under conditions where full complexity is not needed, by partitioning species as “fast” or “slow” based on their local production and loss rates. Previous implementations of this adaptive solver suffered from excessive overhead in the repeated construction of the local Jacobian matrix or were hard‐wired to specific mechanisms. Here we retain the general applicability of the method to any mechanism and avoid overhead by using pre‐computed Jacobian matrix terms for the full mechanism and cropping the matrix locally to remove the slow species with no change in memory allocation. We apply this adaptive solver within KPP 3.0.0 to the GEOS‐Chem global 3‐D model of atmospheric chemistry and demonstrate a 32% reduction in solver time while maintaining a mean error lower than 1% for key species in the troposphere. Plain Language Summary Calculating chemical evolution in global atmospheric chemistry models is computationally expensive because the chemical mechanisms typically include hundreds of species to account for all conditions from urban to remote. However, the full chemical complexity is not needed under most conditions. Here we have developed an adaptive auto‐reduction chemical solver that reduces any mechanism on the fly depending on local conditions and without significant computational overhead. We apply this adaptive solver as an option in a new version 3.0.0 of the Kinetic Pre‐Processor (KPP) chemical solver software package that also includes a number of updates relative to previous versions. The adaptive solver achieves a 32% reduction in solver time in a global model simulation while incurring less than 1% average errors for key species. Key Points An updated version 3.0.0 of the Kinetic Pre‐Processor (KPP) integrator of chemical kinetics for atmospheric models has been developed KPP 3.0.0 features an adaptive solver option for reducing chemical mechanisms locally and on the fly where full complexity is not needed The adaptive solver implemented in the global GEOS‐Chem model shows a 32% speedup with errors less than 1% for key tropospheric species
Journal Article
MEXPLORER 1.0.0 – a mechanism explorer for analysis and visualization of chemical reaction pathways based on graph theory
2024
The open-source software MEXPLORER 1.0.0 is presented here. The program can be used to analyze, reduce, and visualize complex chemical reaction mechanisms. The mathematics behind the tool is based on graph theory: chemical species are represented as vertices, and each reaction is described as a set of edges. MEXPLORER is a community tool published under the GNU General Public License.
Journal Article
Atmospheric chemistry, sources and sinks of carbon suboxide, C3O2
by
Lelieveld, Jos
,
Cabrera-Perez, David
,
Horowitz, Abraham
in
Absorption spectra
,
Air sampling
,
Atmosphere
2017
Carbon suboxide, O = C = C = C = O, has been detected in ambient air samples and has the potential to be a noxious pollutant and oxidant precursor; however, its lifetime and fate in the atmosphere are largely unknown. In this work, we collect an extensive set of studies on the atmospheric chemistry of C3O2. Rate coefficients for the reactions of C3O2 with OH radicals and ozone were determined as kOH = (2.6 ± 0.5) × 10−12 cm3 molecule−1 s−1 at 295 K (independent of pressure between ∼ 25 and 1000 mbar) and kO3 < 1.5 × 10−21 cm3 molecule−1 s−1 at 295 K. A theoretical study on the mechanisms of these reactions indicates that the sole products are CO and CO2, as observed experimentally. The UV absorption spectrum and the interaction of C3O2 with water (Henry's law solubility and hydrolysis rate constant) were also investigated, enabling its photodissociation lifetime and hydrolysis rates, respectively, to be assessed. The role of C3O2 in the atmosphere was examined using in situ measurements, an analysis of the atmospheric sources and sinks and simulation with the EMAC atmospheric chemistry–general circulation model. The results indicate sub-pptv levels at the Earth's surface, up to about 10 pptv in regions with relatively strong sources, e.g. influenced by biomass burning, and a mean lifetime of ∼ 3.2 days. These predictions carry considerable uncertainty, as more measurement data are needed to determine ambient concentrations and constrain the source strengths.
Journal Article
A mechanism for halogen release from sea-salt aerosol in the remote marine boundary layer
1996
RECENT measurements of inorganic chlorine gases
1
and hydrocarbons
2
indicate the presence of reactive chlorine in the remote marine boundary layer; reactions involving chlorine and bromine can affect the concentrations of ozone, hydrocarbons and cloud condensation nuclei. The known formation mechanisms of reactive halogens require significant concentrations of nitrogen oxides
3–5
, which are not present in the unpolluted air of the remote marine boundary layer
6
. Here we propose an autocatalytic mechanism for halogen release from sea-salt aerosol: gaseous HOBr is scavenged by the aerosol and converted to only slightly soluble BrCl and Br
2
, which are released into the gas phase. Depending on the sea-salt concentration and given a boundary layer that is stable for a few days, gaseous HOCl and HOBr may reach molar mixing ratios of up to 35 pmol mol
−1
. We calculate that HOBr and HOCl are responsible for 20% and 40%, respectively, of the sulphur (IV) oxidation
7,8
that occurs in the aerosol phase. The additional S(IV) oxidation reduces the formation of cloud-condensation nuclei, and hence the feedback between greenhouse warming, oceanic DMS emission and cloud albedo. We also calculate significant bromine-catalysed ozone loss.
Journal Article
Modeling Atmospheric Chemistry: Interactions between Gas-Phase Species and Liquid Cloud/Aerosol Particles
by
Sander, Rolf
in
Aerosols
,
Atmospheric chemistry
,
Chemical composition and interactions. Ionic interactions and processes
1999
For detailed modeling of atmospheric chemistry it is necessary to consider aqueous-phase reactions in cloud droplets and deliquesced aerosol particles. Often, the gas-phase concentration is in equilibrium with the aqueous phase. Then Henry's law can be used to describe the distribution between the phases provided that the Henry's law coefficient is known. In some cases, thermodynamic equilibrium will not be reached and it is necessary to use kinetic expressions of the rates involved. These rates depend on diffusion constants, accommodation coefficients, Henry's law coefficients, particle size distributions, and several other parameters. This review describes how these processes can be treated in computer modeling and how the necessary data can be obtained. Even though it is written primarily for use in modeling atmospheric chemistry, some parts will also be useful for waste water and pesticide control and in other areas where the distribution of chemicals between the aqueous and the gas phase is important.[PUBLICATION ABSTRACT]
Journal Article
Iodine Chemistry and its Role in Halogen Activation and Ozone Loss in the Marine Boundary Layer: A Model Study
by
von Glasow, Roland
,
Sander, Rolf
,
Vogt, Rainer
in
Aerosols
,
Atmosphere
,
Atmospheric chemistry
1999
A detailed set of reactions treating the gas and aqueous phase chemistry of the most important iodine species in the marine boundary layer (MBL) has been added to a box model which describes Br and Cl chemistry in the MBL. While Br and Cl originate from seasalt, the I compounds are largely derived photochemically from several biogenic alkyl iodides, in particular CH2I2, CH2ClI, C2H5I, C3H7I, or CH3I which are released from the sea. Their photodissociation produces some inorganic iodine gases which can rapidly react in the gas and aqueous phase with other halogen compounds. Scavenging of the iodine species HI, HOI, INO2, and IONO2 by aerosol particles is not a permanent sink as assumed in previous modeling studies. Aqueous-phase chemical reactions can produce the compounds IBr, ICl, and I2, which will be released back into the gas phase due to their low solubility. Our study, although highly theoretical, suggests that almost all particulate iodine is in the chemical form of IO-3. Other aqueous-phase species are only temporary reservoirs and can be re-activated to yield gas phase iodine. Assuming release rates of the organic iodine compounds which yield atmospheric concentrations similar to some measurements, we calculate significant concentrations of reactive halogen gases. The addition of iodine chemistry to our reaction scheme has the effect of accelerating photochemical Br and Cl release from the seasalt. This causes an enhancement in ozone destruction rates in the MBL over that arising from the well established reactions O(1D) + H2O [arrow right] 2OH, HO2 + O3 [arrow right] OH + 2O2, and OH + O3 [arrow right] HO2 + O2. The given reaction scheme accounts for the formation of particulate iodine which is preferably accumulated in the smaller sulfate aerosol particles.[PUBLICATION ABSTRACT]
Journal Article
Chemical Mechanism Solvers in Air Quality Models
by
Zhang, Hong
,
Sander, Rolf
,
Linford, John C.
in
acceleratorarchitectures
,
Air quality
,
Algorithms
2011
The solution of chemical kinetics is one of the most computationally intensivetasks in atmospheric chemical transport simulations. Due to the stiff nature of the system,implicit time stepping algorithms which repeatedly solve linear systems of equations arenecessary. This paper reviews the issues and challenges associated with the construction ofefficient chemical solvers, discusses several families of algorithms, presents strategies forincreasing computational efficiency, and gives insight into implementing chemical solverson accelerated computer architectures.
Journal Article
Global atmospheric budget of simple monocyclic aromatic compounds
by
Taraborrelli, Domenico
,
Sander, Rolf
,
Cabrera-Perez, David
in
Airborne observation
,
Aircraft
,
Aircraft observations
2016
The global atmospheric budget and distribution of monocyclic aromatic compounds is estimated, using an atmospheric chemistry general circulation model. Simulation results are evaluated with an ensemble of surface and aircraft observations with the goal of understanding emission, production and removal of these compounds.Anthropogenic emissions provided by the RCP database represent the largest source of aromatics in the model (≃ 23 TgC year−1) and biomass burning from the GFAS inventory the second largest (≃ 5 TgC year−1). The simulated chemical production of aromatics accounts for ≃ 5 TgC year−1. The atmospheric burden of aromatics sums up to 0.3 TgC. The main removal process of aromatics is photochemical decomposition (≃ 27 TgC year−1), while wet and dry deposition are responsible for a removal of ≃ 4 TgC year−1.Simulated mixing ratios at the surface and elsewhere in the troposphere show good spatial and temporal agreement with the observations for benzene, although the model generally underestimates mixing ratios. Toluene is generally well reproduced by the model at the surface, but mixing ratios in the free troposphere are underestimated. Finally, larger discrepancies are found for xylenes: surface mixing ratios are not only overestimated but also a low temporal correlation is found with respect to in situ observations.
Journal Article