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"Santos, Inês"
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Improving clinical diagnosis of early-stage cutaneous melanoma based on Raman spectroscopy
by
Caspers, Peter J
,
Vincent Noordhoek Hegt
,
Koljenović, Senada
in
Diagnosis
,
Medical diagnosis
,
Melanoma
2018
BackgroundClinical diagnosis of early melanoma (Breslow thickness less than 0.8 mm) is crucial to disease-free survival. However, it is subjective and can be exceedingly difficult, leading to missed melanomas, or unnecessary excision of benign pigmented skin lesions. An objective technique is needed to improve the diagnosis of early melanoma.MethodsWe have developed a method to improve diagnosis of (thin) melanoma, based on Raman spectroscopy. In an ex vivo study in a tertiary referral (pigmented lesions) centre, high-wavenumber Raman spectra were collected from 174 freshly excised melanocytic lesions suspicious for melanoma. Measurements were performed on multiple locations within the lesions. A diagnostic model was developed and validated on an independent data set of 96 lesions.ResultsApproximately 60% of the melanomas included in this study were melanomas in situ. The invasive melanomas had an average Breslow thickness of 0.89 mm. The diagnostic model correctly classified all melanomas (including in situ) with a specificity of 43.8%, and showed a potential improvement of the number needed to treat from 6.0 to 2.7, at a sensitivity of 100%.ConclusionThis work signifies an important step towards accurate and objective clinical diagnosis of melanoma and in particular melanoma with Breslow thickness <0.8 mm.
Journal Article
Effects of intermittent fasting on specific exercise performance outcomes: a systematic review including meta-analysis
by
Santos, Inês
,
Vilhena De Mendonca, Goncalo
,
Minderico, Cláudia
in
adiposity
,
Adolescent
,
Adult
2020
© 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
Journal Article
Exploring the relationship between the Mediterranean diet and weight loss maintenance: the MedWeight study
2020
Weight loss maintenance is crucial for obesity management, yet optimal dietary patterns for this period are not established. We aimed to explore the relationship between adherence to the Mediterranean diet and weight loss maintenance. Sample includes 565 adults (62 % women) of the MedWeight study. Eligible volunteers were those reporting intentional weight loss of ≥10 %, starting from a BMI ≥ 25 kg/m2, over 12 months prior to enrolment. Based on current weight, participants were characterised as maintainers (≤90 % maximum weight) or regainers (>95 % maximum weight). Socio-demographics and weight history were recorded. Dietary intake was assessed by two non-consecutive 24-h recalls within 10 d and analysed in energy, macronutrient and food group intakes. Adherence to the Mediterranean diet was assessed with the Mediterranean Diet Score (MedDietScore) (range 0–55, greater scores showing higher adherence). Protein intake was higher in maintainers than in regainers (P < 0·001). When MedDietScore quartiles were considered, a linear trend for weight loss maintenance was revealed (P < 0·05). After adjustment for basic demographic characteristics, being in the third or fourth quartile of the MedDietScore (v. first) was associated with 2·30 (95 % CI 1·29, 4·09) and 1·88 (95 % CI 1·10, 3·22) increased odds of maintenance. Regarding individual MedDietScore components, only fruit intake is associated with increased odds for maintenance (1·03 (95 % CI 1·01, 1·06)). The leave-one-out approach revealed that at least six MedDietScore components were essential for the observed relationship. Higher adherence to the Mediterranean diet was associated with 2-fold increased likelihood of weight loss maintenance. Future studies should replicate these findings in non-Mediterranean populations as well.
Journal Article
Theory-based physical activity and/or nutrition behavior change interventions for cancer survivors: a systematic review
2024
PurposeTheory-based interventions aimed at promoting health behavior change in cancer survivors seem to be effective but remain scarce. More information on intervention features is also needed. This review aimed to synthesize the evidence from randomized controlled trials evaluating the efficacy of theory-based interventions (and its features) on physical activity (PA) and/or diet behaviors in cancer survivors.MethodsA systematic search in three databases (PubMed, PsycInfo, and Web of Science) identified studies that (i) targeted adult cancer survivors and (ii) included theory-based randomized controlled trials designed to influence PA, diet, or weight management. A qualitative synthesis of interventions’ effectiveness, extensiveness of theory use, and applied intervention techniques was conducted.ResultsTwenty-six studies were included. Socio-Cognitive Theory was the most used theory, showing promising results in PA-only trials and mixed findings in multiple-behavior interventions. Mixed findings were observed for interventions based on the Theory of Planned Behavior and Transtheoretical Model. Limited findings were found in diet-only interventions. A large variability in the extensiveness of theory use, and in intervention techniques was found. Further research is required to understand how and why these interventions offer promise for improving behavior.ConclusionsTheory-based interventions seem to improve PA and diet behaviors in cancer survivors. Further studies, including thorough intervention descriptions, are needed to confirm these findings and identify the optimal features and content of lifestyle theory-based interventions for cancer survivors.Implications for Cancer SurvivorsThis systematic review can contribute to the development of more effective interventions to promote long-term adherence to healthy lifestyle behaviors.
Journal Article
Systematic development and refinement of a user-centered evidence-based digital toolkit for supporting self-care in gestational diabetes mellitus
2025
Gestational diabetes mellitus (GDM) is a pregnancy complication affecting many women, requiring changes in behaviours, which command them to learn self-care practices shortly. Digital interventions have been developed to support women with GDM. However, they have often overlooked women’s needs and characteristics and failed to frame self-care theories into their design. To address this issue, we adopted a mixed methods approach to develop and refine a user-centred, evidence-based digital Toolkit for supporting self-care in GDM, providing behavioural and educational content, particularly about nutrition. To inform the development and refinement of the Toolkit, we conducted a literature review, observed sixty-six nutrition appointments, interviewed eleven dietitians and seventeen patients, and held co-creation sessions with two dietitians, all of which were analysed using a deductive Thematic Analysis. To validate the Toolkit, we conducted a survey with seventeen healthcare professionals, which was analysed using descriptive statistics. The final version of the NUTRIA Toolkit consists of four main modules with thirty-eight artefacts, including behavioural tools to assist women in GDM management. Despite some limitations, this study robustly endorsed the development and refinement of a user-centred, evidence-based Toolkit for supporting self-care in GDM, aiming for future feasibility and trial testing.
Journal Article
Improving extinction projections across scales and habitats using the countryside species-area relationship
2017
The species-area relationship (SAR) has been often used to project species extinctions as a consequence of habitat loss. However, recent studies have suggested that the SAR may overestimate species extinctions, at least in the short-term. We argue that the main reason for this overestimation is that the classic SAR ignores the persistence of species in human-modified habitats. We use data collected worldwide to analyse what is the fraction of bird and plant species that remain in different human-modified habitats at the local scale after full habitat conversion. We observe that both taxa have consistent responses to the different land-use types, with strongest reductions in species richness in cropland across the globe, and in pasture in the tropics. We show that the results from these studies cannot be linearly scaled from plots to large regions, as this again overestimates the impacts of land-use change on biodiversity. The countryside SAR provides a unifying framework to incorporate both the effect of species persistence in the landscape matrix and the non-linear response of the proportion of species extinctions to sampling area, generating more realistic projections of biodiversity loss.
Journal Article
The Ozone–Climate Penalty Over South America and Africa By 2100
by
Sitch, Stephen
,
Mercado, Lina M
,
Cheesman, Alexander W
in
Air pollution
,
Atmospheric chemistry
,
Atmospheric models
2022
Climate change has the potential to increase surface ozone (O3) concentrations, known as the “ozone–climate penalty”, through changes to atmospheric chemistry, transport and dry deposition. In the tropics, the response of surface O3 to changing climate is relatively understudied but has important consequences for air pollution and human and ecosystem health. In this study, we evaluate the change in surface O3 due to climate change over South America and Africa using three state-of-the-art Earth system models that follow the Shared Socioeconomic Pathway 3-7.0 emission scenario from CMIP6. In order to quantify changes due to climate change alone, we evaluate the difference between simulations including climate change and simulations with a fixed present-day climate. We find that by 2100, models predict an ozone–climate penalty in areas where O3 is already predicted to be high due to the impacts of precursor emissions, namely urban and biomass burning areas, although on average, models predict a decrease in surface O3 due to climate change. We identify a small but robust positive trend in annual mean surface O3 over polluted areas. Additionally, during biomass burning seasons, seasonal mean O3 concentrations increase by 15 ppb (model range 12 to 18 ppb) in areas with substantial biomass burning such as the arc of deforestation in the Amazon. The ozone–climate penalty in polluted areas is shown to be driven by an increased rate of O3 chemical production, which is strongly influenced by NOx concentrations and is therefore specific to the emission pathway chosen. Multiple linear regression finds the change in NOx concentration to be a strong predictor of the change in O3 production, whereas increased isoprene emission rate is positively correlated with increased O3 destruction, suggesting NOx-limited conditions over the majority of tropical Africa and South America. However, models disagree on the role of climate change in remote, low-NOx regions, partly because of significant differences in NOx concentrations produced by each model. We also find that the magnitude and location of the ozone–climate penalty in the Congo Basin has greater inter-model variation than that in the Amazon, so further model development and validation are needed to constrain the response in central Africa. We conclude that if the climate were to change according to the emission scenario used here, models predict that forested areas in biomass burning locations and urban populations will be at increasing risk of high O3 exposure, irrespective of any direct impacts on O3 via the prescribed emission scenario.
Journal Article
Structural basis for assembly of non-canonical small subunits into type I-C Cascade
2020
Bacteria and archaea employ CRISPR (clustered, regularly, interspaced, short palindromic repeats)-Cas (CRISPR-associated) systems as a type of adaptive immunity to target and degrade foreign nucleic acids. While a myriad of CRISPR-Cas systems have been identified to date, type I-C is one of the most commonly found subtypes in nature. Interestingly, the type I-C system employs a minimal Cascade effector complex, which encodes only three unique subunits in its operon. Here, we present a 3.1 Å resolution cryo-EM structure of the
Desulfovibrio vulgaris
type I-C Cascade, revealing the molecular mechanisms that underlie RNA-directed complex assembly. We demonstrate how this minimal Cascade utilizes previously overlooked, non-canonical small subunits to stabilize R-loop formation. Furthermore, we describe putative PAM and Cas3 binding sites. These findings provide the structural basis for harnessing the type I-C Cascade as a genome-engineering tool.
Type I-C Cascade (the CRISPR-associated complex for antiviral defense) is a minimal system, comprising only three unique Cas proteins. Cryo-EM structure of the
Desulfovibrio vulgaris
type I-C Cascade reveals the molecular mechanisms that underlie RNA-directed complex assembly.
Journal Article
Environmental Risk Assessment of Glyphosate and Aminomethylphosphonic Acid (AMPA) in Portuguese Groundwater Ecosystems
2024
The aim of the present study was to assess the risk related to the exposure of groundwater ecosystems to herbicide glyphosate and its non-relevant metabolite aminomethylphosphonic acid (AMPA) based on the quotient between measured concentrations gathered from the Water Resources Information System of Portugal, and groundwater quality standards set in legislation and estimated from environmental quality standards in surface waters. Glyphosate was analyzed in 103 groundwater samples collected from 80 wells located in 21 aquifer systems from the four hydrogeological units of mainland Portugal, between 2019 and 2021. It was detected in 14% of the total samples; however, only 10% presented concentration levels above 0.1 µg/L, the groundwater quality standard, and none of these values exceeded the value of 8.67 μg/L estimated from the annual average environmental quality standard proposed for glyphosate in surface waters. In comparison, AMPA was detected in only 5% of 63 groundwater samples, in four dug wells. In both compounds, the maximum concentration level was quantified in a dug well located in the O25-Torres Vedras aquifer system, from the Western unit, with 4.69 and 4.24 μg/L for glyphosate and AMPA, respectively. The results of this study demonstrate that it is extremely important to raise awareness and offer training to farmers on the sustainable use of plant protection products and good agricultural practices, in order to prevent groundwater contamination and improve its quality. There is also an urgent need to carry out ecotoxicological tests with further groundwater species from different functional groups in order to obtain a quality standard that accurately represents the groundwater communities.
Journal Article
Accuracy measurement of different marker based motion analysis systems for biomechanical applications: A round robin study
2022
Multiple camera systems are widely used for 3D-motion analysis. Due to increasing accuracies these camera systems gained interest in biomechanical research areas, where high precision measurements are desirable. In the current study different measurement systems were compared regarding their measurement accuracy. Translational and rotational accuracy measurements as well as the zero offset measurements of seven different measurement systems were performed using two reference devices and two different evaluation algorithms. All measurements were performed in the same room with constant temperature at the same laboratory. Equal positions were measured with the systems according to a standardized protocol. Measurement errors were determined and compared. The highest measurement errors were seen for a measurement system using active ultrasonic markers, followed by another active marker measurement system (infrared) having measurement errors up to several hundred micrometers. The highest accuracies were achieved by three stereo camera systems, using passive 2D marker points having errors typically below 20 [mu]m. This study can help to better assess the results obtained with different measurement systems. With the focus on the measurement accuracy, only one aspect in the selection of a system was considered. Depending on the requirements of the user, other factors like measurement frequency, the maximum analyzable volume, the marker type or the costs are important factors as well.
Journal Article