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The emergence of technology has been suggested to coincide with scarcity of staple resources that led to innovations in the form of tool-assisted strategies to diversify or augment typical diets. We examined seasonal patterns of several types of tool use exhibited by a chimpanzee (Pan troglodytes) population residing in central Africa, to determine whether their technical skills provided access to fallback resources when preferred food items were scarce. Chimpanzees in the Goualougo Triangle exhibit a diverse repertoire of tool behaviours, many of which are exhibited throughout the year. Further, they have developed specific tool sets to overcome the issues of accessibility to particular food items. Our conclusion is that these chimpanzees use a sophisticated tool technology to cope with seasonal changes in relative food abundance and gain access to high-quality foods. Subgroup sizes were smaller in tool using contexts than other foraging contexts, suggesting that the size of the social group may not be as important in promoting complex tool traditions as the frequency and type of social interactions. Further, reports from other populations and species showed that tool use may occur more often in response to ecological opportunities and relative profitability of foraging techniques than scarcity of resources.

The human parasite Plasmodium malariae has relatives infecting African apes ( Plasmodium rodhaini ) and New World monkeys ( Plasmodium brasilianum ), but its origins remain unknown. Using a novel approach to characterise P. malariae -related sequences in wild and captive African apes, we found that this group comprises three distinct lineages, one of which represents a previously unknown, highly divergent species infecting chimpanzees, bonobos and gorillas across central Africa. A second ape-derived lineage is much more closely related to the third, human-infective lineage P. malariae , but exhibits little evidence of genetic exchange with it, and so likely represents a separate species. Moreover, the levels and nature of genetic polymorphisms in P. malariae indicate that it resulted from the zoonotic transmission of an African ape parasite, reminiscent of the origin of P. falciparum . In contrast, P. brasilianum falls within the radiation of human P. malariae , and thus reflects a recent anthroponosis. Plasmodium malariae is a cause of malaria in humans and related species have been identified in non-human primates. Here, the authors use genomic analyses to establish that human P. malariae arose from a host switch of an ape parasite whilst a species infecting New World monkeys can be traced to a reverse zoonosis.

Earth’s environments harbor complex consortia of microbes that affect processes ranging from host health to biogeochemical cycles. Understanding their evolution and function is limited by an inability to isolate genomes in a high-throughput manner. Here, we present a workflow for bacterial whole-genome sequencing using open-source labware and the OpenTrons robotics platform, reducing costs to approximately $10 per genome. We assess genomic diversity within 45 gut bacterial species from wild-living chimpanzees and bonobos. We quantify intraspecific genomic diversity and reveal divergence of homologous plasmids between hosts. This enables population genetic analyses of bacterial strains not currently possible with metagenomic data alone.

The malaria parasite Plasmodium falciparum causes substantial human mortality, primarily in equatorial Africa. Enriched in affected African populations, the B*53 variant of HLA-B, a cell surface protein that presents peptide antigens to cytotoxic lymphocytes, confers protection against severe malaria. Gorilla, chimpanzee, and bonobo are humans’ closest living relatives. These African apes have HLA-B orthologs and are infected by parasites in the same subgenus ( Laverania ) as P. falciparum , but the consequences of these infections are unclear. Laverania parasites infect bonobos ( Pan paniscus ) at only one (TL2) of many sites sampled across their range. TL2 spans the Lomami River and has genetically divergent subpopulations of bonobos on each side. Papa-B, the bonobo ortholog of HLA-B, includes variants having a B*53-like (B07) peptide-binding supertype profile. Here we show that B07 Papa-B occur at high frequency in TL2 bonobos and that malaria appears to have independently selected for different B07 alleles in the two subpopulations. A variant of MHC class I is protective against severe malaria disease and enriched in affected African populations. Here, Wroblewski et al., characterise the consequences of malaria infection in wild bonobo populations showing that the presence of malaria drives a similar evolution in immune genes.

Documentaries are the primary means by which many people observe the behavior of wild primates. By influencing layperson perceptions of wild primates, documentaries could impact viewer conservation-related beliefs and behaviors and, therefore, the well-being of wild primates. To investigate such portrayals, we examined documentaries depicting the four species that were most represented in documentaries: rhesus macaque, chimpanzee, ring-tailed lemur, and mountain gorilla. For each documentary, we continuously coded behavior, conducted scan samples of age-sex classes at 3-min intervals, and made ad libitum observations of inaccuracies and misleading content. We expected that representation of age-sex classes and activity budgets in documentaries would differ from those reported in the primary literature for the same species in the wild. In addition, we expected inaccurate depictions for every species. For ring-tailed lemurs, adult males were underrepresented in documentaries. For macaques, chimpanzees, and gorillas, representation of age-sex classes did not differ significantly from observations in the wild. Documentary depictions of activity budgets differed from researcher accounts of wild primate behavior for rhesus macaques, chimpanzees, and mountain gorillas, but not for ring-tailed lemurs. In general, documentaries overrepresented traveling and social behaviors such as play and grooming. Documentaries, especially docudramas, may have emphasized traveling because such footage allows storyline narration, whereas the emphasis on social behavior was likely due to the appeal of such footage to audiences. Inaccuracies were documented for all four species, with rhesus macaques having the most inaccuracies. We propose that primatologists have an ethical imperative to enhance the accuracy of primate portrayals to audiences.

Several populations of wild chimpanzees use tools to raid bee nests, but preliminary observations of chimpanzees in the Congo Basin indicate that they may have developed sophisticated technical solutions to gather honey that differ from those of apes in other regions. Despite the lack of habituated groups within the range of the central subspecies, there have been several reports of different types of tools used by chimpanzees to open beehives and gather honey. Researchers have observed some of these behaviors (honey dipping) in populations of western and eastern chimpanzees, whereas others (hive pounding) may be limited to this region. Toward evaluating hypotheses of regional tool using patterns, we provide the first repeated direct observations and systematic documentation of tool use in honey-gathering by a population of Pan troglodytes troglodytes. Between 2002 and 2006, we observed 40 episodes of tool use in honey-gathering by chimpanzees in the Goualougo Triangle, Republic of Congo. Pounding was the most common and successful strategy to open beehives. Chimpanzees at this site used several tools in a single tool-using episode and could also attribute multiple functions to a single tool. They exhibited flexibility in responses toward progress in opening a hive and hierarchical structuring of tool sequences. Our results support suggestions of regional tool using traditions in honey-gathering, which could be shaped by variation in bee ecology across the chimpanzee range. Further, we suggest that these chimpanzees may have an enhanced propensity to use tool sets that could be related to other aspects of their tool repertoire. Clearly, there is still much to be learned about the behavioral diversity of chimpanzees residing within the Congo Basin.

The tropical forests of Western Equatorial Africa are home to extraordinary biodiversity, including sympatric chimpanzees (Pan troglodytes troglodytes) and western lowland gorillas (Gorilla gorilla gorilla). The region is also comprised of significant stands of Intact Forest Landscapes (IFL) that are in rapid decline. As part of a regional monitoring effort, we partnered with local government officials, conservation NGOs, and the timber company working in the region to assess ape abundances in relation to habitat characteristics and anthropogenic disturbances and compare IFL and non-IFL areas in the Sangha Trinational landscape, Republic of Congo. We found that chimpanzees and gorillas occur at high densities in IFL, as well as non-IFL. To better understand how selective logging changes floristic factors, we compared herb and tree densities from botanical surveys conducted in IFL and non-IFL. IFL had higher tree stem densities and less terrestrial herbs than logged habitats. However, few ape resources were logged in this extraction cycle and areas with tree stems removed subsequently had higher abundances of terrestrial herbs preferred by apes, which may contribute to the elevated ape abundance estimates. Floristic differences in logged forest were identified to coincide with differences in ape resource use. The chimpanzee tree nesting niche was reduced in non-IFL as night nests were constructed significantly closer to the ground than in IFL. Whereas, gorilla nest height locations did not differ significantly between IFL and non-IFL. To identify other potential anthropogenic impacts, we assessed direct and indirect impacts of road expansion and illegal hunting on wildlife in these remote areas. Increased access to IFL that facilitates illegal hunting raises concern for protecting wildlife across Western Equatorial Africa. We urge that the results of biodiversity assessments and strategic aspects of long-term protection should be taken into account when identifying conservation set-asides and maintaining diverse states of modified forests. Finally, the results of our monitoring efforts are provided as evidence of the value of long-term collaborations among local stakeholders, government officials, conservation agencies, and industrial partners to improve the implementation of certification standards and biodiversity conservation initiatives.

Societal Impact Statement Globally, the conservation value of big trees is linked to biodiversity and carbon sequestration. We studied trees, greater than 80 cm in diameter, in a forest in the Republic of Congo. We found that more than 100 species reach this size and the most abundant species is Sapele (Entandrophragma cylindricum), which is exploited for global timber markets. More than 40% of the large tree species are used by local people for food. Our results show that big trees are important to local people in the Congo Basin in addition to being the focus of industrial logging and in many areas the basis for the formal economy. Summary The main aim of this paper is to establish standard techniques for surveying the biggest trees in tropical rain forests. One hundred and thirty hectares (13 plots of 10 ha) of unlogged mixed species terra firma forest in the Republic of Congo were surveyed for trees greater than 80 cm in diameter. More than 100 species of tree exceed 80 cm in diameter and one species, Entandrophragma cylindricum (Sapele or Sapelli), dominates this size class. Obtaining comparable data of big trees from different sites across the tropics is a priority. We propose a standardised plot size of 10 ha, replicated 10 times for each forest type at different study sites and a minimum trunk diameter of 70 cm at breast height or above buttresses. Globally, the conservation value of big trees is linked to biodiversity and carbon sequestration. We studied trees, greater than 80 cm in diameter, in a forest in the Republic of Congo. We found that more than 100 species reach this size and the most abundant species is Sapele (Entandrophragma cylindricum), which is exploited for global timber markets. More than 40% of the large tree species are used by local people for food. Our results show that big trees are important to local people in the Congo Basin in addition to being the focus of industrial logging and in many areas the basis for the formal economy.

In 2006-2007 we observed an unusual mortality event among apes in northern Republic of Congo that, although not diagnostically confirmed, we believe to have been a disease outbreak. In 2007-2011 we conducted ape nest surveys in the region, recording 11,835 G. g. gorilla nests (2,262 groups) and 5,548 P. t. troglodytes nests (2,139 groups). We developed a statistical model to determine likely points of origin of the outbreak to help identify variables associated with disease emergence and spread. We modeled disease spread across the study area, using suitable habitat conditions for apes as proxy for local ape densities. Infectious status outputs from that spread model were then used alongside vegetation, temperature, precipitation and human impact factors as explanatory variables in a Generalized Linear Model framework to explain observed 2007-2011 ape nest trends in the region. The best models predicted emergence in the western region of Odzala-Kokoua National Park and north of the last confirmed Ebola virus disease epizootics. Roads were consistently associated with attenuation of modeled virus spread. As disease is amongst the leading threats to great apes, gaining a better understanding of disease transmission dynamics in these species is imperative. Identifying ecological drivers underpinning a disease emergence event and transmission dynamics in apes is critical to creating better predictive models to guide wildlife management, develop potential protective measures for wildlife and to reduce potential zoonotic transmission to humans. The results of our model represent an important step in understanding variables related to great ape disease ecology in Central Africa.

The last decade has witnessed remarkable discoveries and advances in our understanding of the tool using behaviour of animals. Wild populations of capuchin monkeys have been observed to crack open nuts with stone tools, similar to the skills of chimpanzees and humans. Corvids have been observed to use and make tools that rival in complexity the behaviours exhibited by the great apes. Excavations of the nut cracking sites of chimpanzees have been dated to around 4-5 thousand years ago. Tool Use in Animals collates these and many more contributions by leading scholars in psychology, biology and anthropology, along with supplementary online materials, into a comprehensive assessment of the cognitive abilities and environmental forces shaping these behaviours in taxa as distantly related as primates and corvids.