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result(s) for
"Sarkar, Rupa"
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Bifurcation kinetics of drug uptake by Gram-negative bacteria
by
Westfall, David A.
,
Krishnamoorthy, Ganesh
,
Wolloscheck, David
in
Anomalies
,
Anti-Bacterial Agents - metabolism
,
Anti-Bacterial Agents - pharmacology
2017
Cell envelopes of many bacteria consist of two membranes studded with efflux transporters. Such organization protects bacteria from the environment and gives rise to multidrug resistance. We report a kinetic model that accurately describes the permeation properties of this system. The model predicts complex non-linear patterns of drug uptake complete with a bifurcation, which recapitulate the known experimental anomalies. We introduce two kinetic parameters, the efflux and barrier constants, which replace those of Michaelis and Menten for trans-envelope transport. Both compound permeation and efflux display transitions, which delineate regimes of efficient and inefficient efflux. The first transition is related to saturation of the transporter by the compound and the second one behaves as a bifurcation and involves saturation of the outer membrane barrier. The bifurcation was experimentally observed in live bacteria. We further found that active efflux of a drug can be orders of magnitude faster than its diffusion into a cell and that the efficacy of a drug depends both on its transport properties and therapeutic potency. This analysis reveals novel physical principles in the behavior of the cellular envelope, creates a framework for quantification of small molecule permeation into bacteria, and should invigorate structure-activity studies of novel antibiotics.
Journal Article
Reporting guidelines for clinical trial reports for interventions involving artificial intelligence: the CONSORT-AI extension
by
Moher, David
,
Denniston, Alastair K.
,
Cruz Rivera, Samantha
in
692/308/2779
,
706/703/559
,
Artificial Intelligence
2020
The CONSORT 2010 statement provides minimum guidelines for reporting randomized trials. Its widespread use has been instrumental in ensuring transparency in the evaluation of new interventions. More recently, there has been a growing recognition that interventions involving artificial intelligence (AI) need to undergo rigorous, prospective evaluation to demonstrate impact on health outcomes. The CONSORT-AI (Consolidated Standards of Reporting Trials–Artificial Intelligence) extension is a new reporting guideline for clinical trials evaluating interventions with an AI component. It was developed in parallel with its companion statement for clinical trial protocols: SPIRIT-AI (Standard Protocol Items: Recommendations for Interventional Trials–Artificial Intelligence). Both guidelines were developed through a staged consensus process involving literature review and expert consultation to generate 29 candidate items, which were assessed by an international multi-stakeholder group in a two-stage Delphi survey (103 stakeholders), agreed upon in a two-day consensus meeting (31 stakeholders) and refined through a checklist pilot (34 participants). The CONSORT-AI extension includes 14 new items that were considered sufficiently important for AI interventions that they should be routinely reported in addition to the core CONSORT 2010 items. CONSORT-AI recommends that investigators provide clear descriptions of the AI intervention, including instructions and skills required for use, the setting in which the AI intervention is integrated, the handling of inputs and outputs of the AI intervention, the human–AI interaction and provision of an analysis of error cases. CONSORT-AI will help promote transparency and completeness in reporting clinical trials for AI interventions. It will assist editors and peer reviewers, as well as the general readership, to understand, interpret and critically appraise the quality of clinical trial design and risk of bias in the reported outcomes.
The CONSORT-AI and SPIRIT-AI extensions improve the transparency of clinical trial design and trial protocol reporting for artificial intelligence interventions.
Journal Article
Guidelines for clinical trial protocols for interventions involving artificial intelligence: the SPIRIT-AI extension
by
Denniston, Alastair K.
,
Cruz Rivera, Samantha
,
Calvert, Melanie J.
in
692/308/2779
,
706/703/559
,
Artificial Intelligence
2020
The SPIRIT 2013 statement aims to improve the completeness of clinical trial protocol reporting by providing evidence-based recommendations for the minimum set of items to be addressed. This guidance has been instrumental in promoting transparent evaluation of new interventions. More recently, there has been a growing recognition that interventions involving artificial intelligence (AI) need to undergo rigorous, prospective evaluation to demonstrate their impact on health outcomes. The SPIRIT-AI (Standard Protocol Items: Recommendations for Interventional Trials–Artificial Intelligence) extension is a new reporting guideline for clinical trial protocols evaluating interventions with an AI component. It was developed in parallel with its companion statement for trial reports: CONSORT-AI (Consolidated Standards of Reporting Trials–Artificial Intelligence). Both guidelines were developed through a staged consensus process involving literature review and expert consultation to generate 26 candidate items, which were consulted upon by an international multi-stakeholder group in a two-stage Delphi survey (103 stakeholders), agreed upon in a consensus meeting (31 stakeholders) and refined through a checklist pilot (34 participants). The SPIRIT-AI extension includes 15 new items that were considered sufficiently important for clinical trial protocols of AI interventions. These new items should be routinely reported in addition to the core SPIRIT 2013 items. SPIRIT-AI recommends that investigators provide clear descriptions of the AI intervention, including instructions and skills required for use, the setting in which the AI intervention will be integrated, considerations for the handling of input and output data, the human–AI interaction and analysis of error cases. SPIRIT-AI will help promote transparency and completeness for clinical trial protocols for AI interventions. Its use will assist editors and peer reviewers, as well as the general readership, to understand, interpret and critically appraise the design and risk of bias for a planned clinical trial.
The CONSORT-AI and SPIRIT-AI extensions improve the transparency of clinical trial design and trial protocol reporting for artificial intelligence interventions.
Journal Article
Reporting guidelines for clinical trial reports for interventions involving artificial intelligence: the CONSORT-AI Extension
by
Oakden-Rayner, Luke
,
Esteva, Andre
,
Panico, Maria Beatrice
in
Accuracy
,
Artificial Intelligence
,
Checklist
2020
AbstractThe CONSORT 2010 (Consolidated Standards of Reporting Trials) statement provides minimum guidelines for reporting randomised trials. Its widespread use has been instrumental in ensuring transparency when evaluating new interventions. More recently, there has been a growing recognition that interventions involving artificial intelligence (AI) need to undergo rigorous, prospective evaluation to demonstrate impact on health outcomes.The CONSORT-AI extension is a new reporting guideline for clinical trials evaluating interventions with an AI component. It was developed in parallel with its companion statement for clinical trial protocols: SPIRIT-AI. Both guidelines were developed through a staged consensus process, involving a literature review and expert consultation to generate 29 candidate items, which were assessed by an international multi-stakeholder group in a two-stage Delphi survey (103 stakeholders), agreed on in a two-day consensus meeting (31 stakeholders) and refined through a checklist pilot (34 participants).The CONSORT-AI extension includes 14 new items, which were considered sufficiently important for AI interventions, that they should be routinely reported in addition to the core CONSORT 2010 items. CONSORT-AI recommends that investigators provide clear descriptions of the AI intervention, including instructions and skills required for use, the setting in which the AI intervention is integrated, the handling of inputs and outputs of the AI intervention, the human-AI interaction and providing analysis of error cases.CONSORT-AI will help promote transparency and completeness in reporting clinical trials for AI interventions. It will assist editors and peer-reviewers, as well as the general readership, to understand, interpret and critically appraise the quality of clinical trial design and risk of bias in the reported outcomes.
Journal Article
Guidelines for clinical trial protocols for interventions involving artificial intelligence: the SPIRIT-AI Extension
by
Oakden-Rayner, Luke
,
Esteva, Andre
,
Panico, Maria Beatrice
in
Accuracy
,
Artificial Intelligence
,
Checklist
2020
AbstractThe SPIRIT 2013 (The Standard Protocol Items: Recommendations for Interventional Trials) statement aims to improve the completeness of clinical trial protocol reporting, by providing evidence-based recommendations for the minimum set of items to be addressed. This guidance has been instrumental in promoting transparent evaluation of new interventions. More recently, there is a growing recognition that interventions involving artificial intelligence need to undergo rigorous, prospective evaluation to demonstrate their impact on health outcomes.The SPIRIT-AI extension is a new reporting guideline for clinical trials protocols evaluating interventions with an AI component. It was developed in parallel with its companion statement for trial reports: CONSORT-AI. Both guidelines were developed using a staged consensus process, involving a literature review and expert consultation to generate 26 candidate items, which were consulted on by an international multi-stakeholder group in a 2-stage Delphi survey (103 stakeholders), agreed on in a consensus meeting (31 stakeholders) and refined through a checklist pilot (34 participants).The SPIRIT-AI extension includes 15 new items, which were considered sufficiently important for clinical trial protocols of AI interventions. These new items should be routinely reported in addition to the core SPIRIT 2013 items. SPIRIT-AI recommends that investigators provide clear descriptions of the AI intervention, including instructions and skills required for use, the setting in which the AI intervention will be integrated, considerations around the handling of input and output data, the human-AI interaction and analysis of error cases.SPIRIT-AI will help promote transparency and completeness for clinical trial protocols for AI interventions. Its use will assist editors and peer-reviewers, as well as the general readership, to understand, interpret and critically appraise the design and risk of bias for a planned clinical trial.
Journal Article
To do no harm — and the most good — with AI in health care
by
Hoffman, Sara M.
,
Manrai, Arjun Kumar
,
Brennan, Patricia Flatley
in
692/700
,
706/648/453
,
706/703/559
2024
Drawing from real-life scenarios and insights shared at the RAISE (Responsible AI for Social and Ethical Healthcare) conference, we highlight the critical need for AI in health care (AIH) to primarily benefit patients and address current shortcomings in health care systems such as medical errors and access disparities.
Journal Article
Factors Influencing ICT adoption by Faculty in the Teaching Learning Process
2015
This study seeks to find out the extent of different influence factors have on the attitude of the Faculty towards adoption of Information and Communication Technology (ICT). Teachers who have differences in demographical variables may also differ in their adaptability tendencies. Survey methodology was facilitatedusing questionnaires which were given to 300 College teachers randomly chosen from different colleges working under different types of management in the city of Bangalore. 287 questionnaireswere returned. Out of these, 250 were considered complete and chosen as our study sample. Oscarson’s ‘Adoption to proneness’ scale was adopted with minor modifications in language and items based on available literature. A pilot study was done with 50 sample size for checking validity. After satisfactory results came, the adopted questionnaire was given to 300 respondents. A personal data form was also given to gather the personal details of these respondents regarding their age, gender, department of work, teaching level, teaching workload per week, years of experience and academic qualification. The analysis shows significant differences in influence in adoption of ICT among age groups, department of work and teaching levels. Academic qualification didn’t show any significant difference. The implications of the findings will help in formulation of tailor-made ICT in-service training and orientation programmes for teachers who are digital immigrants and teachers who are digital natives as well.
Journal Article
Study of acoustic emission due to vaporisation of superheated droplets at higher pressure
by
Mondal, Prasanna Kumar
,
Chatterjee, Barun Kumar
,
Sarkar, Rupa
in
Acoustic emission
,
Acoustic properties
,
Acoustics
2017
The bubble nucleation in superheated liquid can be controlled by adjusting the ambient pressure and temperature. At higher pressure the threshold energy for bubble nucleation increases and we have observed that the amplitude of the acoustic emission during vaporisation of superheated droplet decreases with increase in pressure at any given temperature. Other acoustic parameters such as the primary harmonic frequency and the decay time constant of the acoustic signal also decrease with increase in pressure. It is independent of the type of superheated liquid. The decrease in signal amplitude limits the detection of bubble nucleation at higher pressure. This effect is explained by the microbubble growth dynamics in superheated liquid.
Regulation of micrornas and analysis of the splicing inhibitor spliceostatin a
2013
The advent of deep sequencing has revealed marked differences in microRNA (miRNA) expression profiles between cell types. We focus on how miRNAs are regulated in embryonic stem cells (ESCs) and their differentiated neural progenitor stem cells (NPSCs). We discovered that 60% of miRNAs are regulated b y transcription. The remaining 40% of miRNAs were transcribed but not processed in ESCs. Furthermore, systematic analysis of miRNAs on chromosome 1 and 2 helped to validate our results. We show that 43% of these miRNAs, which are highly expressed in differentiated cell types but poorly expressed in ESCs, were transcribed but not processed in ESCs. Therefore we infer that post- transcr iptional regulation of miRNAs is prevalent in ESCs and could potentially be a characteristic of this cell type. Post-transcriptional regulation of miRNAs is also evident in miRNA clusters. Clusters of miRNAs are transcribed together however individual mature miRNA expression often differs between tissues and even within the same tissue type. Following investigation into post-transcriptional regulation, we discovered extensive alternative polyadenylation in three different miRNA clusters. We suggest that alternative polyadenylation has the potential to influence regulation of individual miRNAs within a cluster contributing to their differential expression levels.
Dissertation