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result(s) for
"Sarmiento, Rodrigo"
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A decrease in taxonomic and functional diversity of dung beetles impacts the ecosystem function of manure removal in altered subtropical habitats
by
Sarmiento-Garcés, Rodrigo
,
Hernández, Malva Isabel Medina
in
Agricultural ecosystems
,
Animals
,
Beetles
2021
The loss of biodiversity—caused mainly by habitat destruction—is one of the environmental problems with major repercussions on ecosystem functioning. Nevertheless, our understanding of the functional consequences of habitat changes on the communities and ecosystems remains limited to a small number of case studies. We evaluated the change in taxonomic and functional diversity of copro-necrophagous beetles (Scarabaeinae) and their relationship with the varying environmental factors present in four habitats with different degrees of disturbance. Furthermore, we evaluated how changes in taxonomic and functional diversity affect the rates of excrement removal. The collections were carried out at four locations in the state of Santa Catarina, Southern Brazil, on natural systems with different degrees of disturbances (forests in advanced and initial succession) and agroecosystems (silviculture and pastures dedicated to livestock). We collected a total of 1266 dung beetles distributed in 35 species and classified into 11 functional groups. The taxonomic and functional diversity analyses showed that habitats that still maintain an arboreal stratum do not present differences between them, in contrast to habitats dedicated to livestock where there was a significant loss of species and functional groups. The distance between the trees, as well as the air and soil temperatures were determining factors in the selection of species and functional groups. Some of these environmental factors explain the differences in functional traits, represented as varying abundances of the species found. The rates of manure removal from the ecosystem were positively correlated to taxonomic and functional richness as well as biomass of beetles. Thus, we can conclude that habitats with tree strata have the capacity to preserve a larger proportion of the regional set of species as well as the important ones, while preserving the taxonomic and functional diversity and the ecosystem functions, such as the excrement removal rate.
Journal Article
Prevalence and risk factors of bovine viral diarrhea in Colombian cattle
by
Martínez, Rodrigo
,
Ortega, Diego Ortiz
,
Tobón Torreglosa, Julio César
in
bovine
,
Bovine rhinotracheitis
,
bovine viral diarrhea virus
2020
Background and Aim: Bovine viral diarrhea virus (BVDV) is present in most cattle-raising countries around the world, and it has a negative economic impact in cattle herds. In Colombia, previous studies have estimated the prevalence of BVDV in specific locations. The aim of this study was to estimate the prevalence of BVDV in cattle herds located at several municipalities across the country and to identify the associated risk and protective factors. Materials and Methods: A cross-sectional study was carried out to investigate the prevalence of BVDV in Colombian cattle populations at farm and animal-levels. A total of 387 herds and 8110 animals located in seven different departments were included in this study. Results: An animal- and farm-level prevalence of 36% and 69%, respectively, were estimated. A high variation for the farm-level prevalence was found among the municipalities studied. Moreover, seropositive cattle to the infectious bovine rhinotracheitis virus (odds ratio (OR)=2.38, p=0.0479) and Neospora caninum (OR=3.15, p=0.0122) were more likely to be seropositive for BVDV, while the practice of burning dead animals at the farm was identified as a protective factor (OR=0.17, p=0.014). Conclusion: The prevalence of BVDV varied more at farm-level compared to animal-level. Two risk factors and one protective factor were identified. The results of the current study are essential to understand the epidemiology of BVDV in Colombia, and to formulate strategies in the region to mitigate the impact of this virus on the productive and reproductive indicators of cattle farms at the regional level.
Journal Article
Diversity and efficacy of insect sampling methods in an urban tropical dry forest of the Colombian Caribbean
by
Sarmiento-Garcés, Rodrigo
,
Neme, Rafik
,
Posada-Echeverría, Daniel
in
Analysis
,
Animals
,
Biodiversity
2025
Tropical dry forests (TDFs) are among the most threatened ecosystems in Colombia and globally. Characterized by distinct dry and wet seasons, TDFs support a rich diversity of flora and fauna and offer crucial ecosystem services, despite facing significant threats such as deforestation, urbanization and climate change. This study provides a comprehensive assessment of insect diversity within an urban TDF area in Puerto Colombia, Atlántico and in the Colombian Caribbean, by comparing three traditional sampling methods: Malaise traps, pitfall traps, and canopy fogging. In total, 3,135 insects were collected, representing 413 morphospecies across various trophic guilds. Our findings indicate that Malaise traps were the most effective in capturing a diverse range of species, followed by pitfall traps, while canopy fogging yielded the lowest species richness. Each method captured unique species, demonstrating that these methods are complementary in capturing the full spectrum of insect diversity in TDFs. Additionally, our study contributes valuable data on the taxonomic and functional diversity of insects in this continuously threatened ecosystem, underscoring the need for conservation efforts in urban and peri-urban TDFs.
Journal Article
Comparison of metabolic syndrome prevalence using four different definitions – a population-based study in Finland
by
Padron-Monedero, Alicia
,
Noguer-Zambrano, Isabel
,
Sarmiento Suárez, Rodrigo
in
Age groups
,
Agreements
,
Analysis
2021
Background
Metabolic syndrome (MetS) is a public health problem in Europe, affecting all age groups. Several MetS definitions are available. The aim of this study was to compare four different MetS definitions in the Finnish adult population, to assess their agreement and to evaluate the impact of the choice of the definition on the prevalence of MetS.
Methods
Data from FinHealth 2017, a cross-sectional national population health survey, focusing on adults aged 25 years or older were used in the analysis (
n
=5687). Measured data on anthropometrics, blood pressure and biomarkers together with questionnaire data were used to classify the participants into the MetS categories according to the four definitions. The definitions chosen for the comparison were those by the World Health Organization (WHO) (1998), National Cholesterol Education Program Adult Treatment Panel III (NCEP-ATP III) (2004), International Diabetes Federation (IDF) (2005), and Joint Interim Statement (JIS) (2009).
Results
The four MetS definitions resulted in substantially different MetS prevalence: 17.7% by WHO, 33.3% by NCEP-ATP III, 41.5% by IDF, and 43.0% by JIS. Regardless of the definition used, the prevalence of MetS increased with age. The prevalence of the different components varied between the definitions, depending on the different cut-off points adopted. Out of all participants, only 13.6% were identified to have MetS according to all four definitions. Agreement between participants recognised by different MetS definitions, estimated through kappa coefficients, was almost perfect for IDF vs. JIS (0.97), strong for JIS vs. NCEP-ATP III (0.80), moderate for IDF vs. NCEP-ATP III (0.76) and weak for WHO vs. NCEP-ATP III (0.42), WHO vs. IDF (0.41) and WHO vs. JIS (0.40).
Conclusions
Differences between observed prevalence of MetS in Finnish men and women using different MetS definitions were large. For cross-country comparisons, as well as for trend analyses within a country, it is essential to use the same MetS definition to avoid discrepancies in classification due to differences in used definitions.
Journal Article
Genetic selection indices for growth traits in Blanco-Orejinegro cattle
by
Ramírez Toro, Edison J
,
Martínez Sarmiento, Rodrigo A
,
Mourão, Gerson Barreto
in
Analysis
,
Animal Genetics and Genomics
,
Body weight
2021
Abstract
Selection indices are used in genetic improvement programs, with the purpose of selectins simultaneous for several economically important traits. The objective of this study was to construct equations for selection indices in the Blanco-Orejinegro (BON) breed and to determine the index that would generate the greatest genetic progress. The information used included birth weight (BW), body weights adjusted to 120, 240, 480, and 720 days old (W120, W240, W240, 480 and W720, respectively), age at first calving (AFC) and interval between first and second calving (IBC) estimated breeding values. Two Smith and Hazel indices were calculated using variances (I1) and literature (I2), with a part two indices designed using information from experts and breeders (I3 and I4). All the indices favored the reduction of weight at birth. The I1 focused mainly on W120 and I2, I3 and I4 focused on 720. In general, the estimated indices obtained similar reliability and expected genetic differences I1 generated a decrease in direct BW. I2 generated the largest increases in BW and AFC. I3 and I4 generated positive changes in growth and reproductive traits, with I3 generating the greatest genetic gains in the population, especially for W240.
Journal Article
Integrative research and innovation strategy for rare diseases. Insights from the 5-year European joint programme on rare diseases, including analysis to inform recommendations for future actions
by
Cellai, Laura Lee
,
Sarmiento-Suárez, Rodrigo
,
Posada de la Paz, Manuel
in
Access
,
Alignment
,
Analysis
2025
Background
The European Joint Programme on Rare Diseases (EJP RD) was an initiative that sought to integrate different rare disease strategies into a research ecosystem. This paper summarizes the work of the dedicated work package on Integrative Research and Innovation Strategy and outlines recommendations to facilitate alignment with National Plans and Strategies for Rare Diseases.
Methods
We carried out three periodic surveys (in 2020, 2021 and 2023) on the status of national plans and strategies (NP/NS) for rare diseases in EJP RD member countries. Using the feedback from the surveys and other sources, we developed an annual mapping of research and innovation needs and their alignment with the EJP RD programme. A review of the findings and progress from these approaches – including two strategic policy workshops and the development of National Mirror Groups – informed the recommendations to bridge the gap between national efforts and European strategies.
Results
A total of 34 countries responded to at least one survey. Implementation is uneven: 76% of countries have had their NP/NS approved at some point, but renewals are irregular. For EU13 countries, the most frequent barrier to developing, improving and translating rare disease (RD) research results was funding. In terms of the Programme’s activities covering mapped needs, we achieved global coverage of 65.8%, with greater coverage of needs for both the diagnostic pathway and the treatment pathway (71%). Four National Mirror Groups were developed during the Programme’s first 5 years, and a further seven were established by mid-2024.
Conclusions
Despite recent progress in establishing a research ecosystem for rare diseases in Europe, several challenges remain and should be addressed. These include availability and accessibility of diagnostics, medicines and medical devices across Europe, inequalities between and within countries, compliance with the FAIR data principles and the lack of a comprehensive policy framework to integrate different rare diseases initiatives. Next actions need to strengthen the coordination and alignment of funding and national policies, innovation in the translation of research results and the reach of a holistic research ecosystem. National Mirror Groups will play an important role in this respect.
Journal Article
Genetic parameters and trends for growth traits in Blanco Orejinegro cattle
by
Burgos Paz, William O
,
Elzo, Mauricio A
,
Ramírez Toro, Edison J
in
Analysis
,
Animal Genetics and Genomics
,
Beef cattle
2020
Abstract
Since 1940, efforts have been made to preserve the Blanco Orejinegro (BON) cattle breed by maintaining gene banks. Nine years ago, a BON genetic improvement program was implemented to increase genetic gain based on control of productivity and the use of performance tests, polygenic and genomic evaluations, and selection indices. The objective of this study was to estimate genetic parameters and trends for growth traits by using polygenic (PM) and genomic–polygenic (GPM) models. Productive information from the years 1980 to 2019 was used. The following data were used: 7,304 birth weight (BW) records, 1,281 records of body weight adjusted to 120 days (W120), 4,791 records of weight adjusted to 240 days (W240), 3,339 records of weight adjusted to 480 days (W480), and 1,364 records of weight adjusted to 720 days (W720). The relationship matrix included 13,612 pure animals belonging to the Colombian Corporation for Agricultural Research - AGROSAVIA and the Producer Network program. A total of 1,224 individuals were genotyped with chips of different densities and all were imputed up to 50,932 SNPs. Polygenic and genomic-polygenic models were used to estimate genetic parameters and correlations between the genetic values estimated by each model. A generalized additive model with smoothing was used to estimate trends of genetic values from 1980 to 2019. Heritabilities between 0.29 and 0.40, genetic correlations between 0.13 and 0.94, and phenotypic correlations between 0.23 and 0.72 were observed. Close-to-zero genetic growth was observed for BW and W120. Genetic trends for the other traits were positive, with higher growth in the last 7 years. The heritabilities observed in this population indicate that the traits measured would respond to selection. Greater genetic progress can be achieved in W240, W480, and W720 by continuing with genetic evaluations and developing performance tests and strategies to make genetic material readily available to producers.
Journal Article
Silicosis mortality in Spain (1999–2020): A temporal and geographical approach
by
Sánchez-Díaz, Germán
,
Sarmiento-Suárez, Rodrigo
,
Arias-Merino, Greta
in
Disease prevention
,
geographic analysis
,
Mortality
2024
Background
Silicosis is an occupational respiratory disease linked to silica dust inhalation. The main driver was traditional coal mining, but in recent decades, new sources of exposure have emerged. Our aim in this study was to assess the temporal and spatial distribution of mortality due to this disease over a 22-year period in Spain.
Methods
Silicosis records, as an Underlying Cause of Death, were extracted from the National Institute of Statistics from 1999 to 2020 using the International Classification of Diseases 10th revision (code J62.8). Age- and sex-adjusted mortality rates per 1,000,000 inhabitants were calculated for the territory and by province. A geographic analysis was performed, and clusters of deaths were identified at the municipal level, and then the outcomes were compared in two periods of 11 years.
Results
There were 2618 deaths due to silicosis in Spain. The mean age of death increased significantly by 0.66% annually from 1999 to 2013. The age-adjusted mortality rate decreased by 7.30% per year, falling from 3.00 to 0.65 per 1,000,000 inhabitants. The temporal pattern showed a significant decrease of mortality rate in 31% of the provinces (16 out of 52), while it increased in Pontevedra. Regarding the spatial analysis, 11 clusters were found in both periods, but some variations were observed in terms of their distribution in the Spanish territory, as well as in the affected municipalities.
Conclusions
The decrease in mortality due to Silicosis could be related to less exposure to silica dust over the years and an improvement in the survival of those affected. It is thus essential to analyze the role of preventive measures for this occupational disease.
Journal Article
The InfAct proposal for a sustainable European health information infrastructure on population health: the Distributed Infrastructure on Population Health (DIPoH)
by
Vukovic, Jakov
,
Haneef, Romana
,
Tijhuis, Mariken
in
610 Medizin und Gesundheit
,
Capacity development
,
Coronaviruses
2022
Background
In Europe, data on population health is fragmented, difficult to access, project-based and prone to health information inequalities in terms of availability, accessibility and especially in quality between and within countries. This situation is further exacerbated and exposed by the recent COVID-19 pandemic. The Joint Action on Health Information (InfAct) that builds on previous works of the BRIDGE Health project, carried out collaborative action to set up a sustainable infrastructure for health information in the European Union (EU). The aim of this paper is to present InfAct’s proposal for a sustainable research infrastructure, the Distributed Infrastructure on Population Health (DIPoH), which includes the setup of a Health Information Portal on population health to be maintained beyond InfAct’s time span.
Methods
The strategy for the proposal was based on three components: scientific initiatives and proposals to improve Health Information Systems (HIS), exploration of technical acceptability and feasibility, and finally obtaining high-level political support.. The technical exploration (Technical Dialogues—TD) was assumed by technical experts proposed by the countries, and political guidance was provided by the Assembly of Members (AoM), which gathered representatives from Ministries of Health and Science of EU/EEA countries. The results from the AoM and the TD were integrated in the sustainability plan compiling all the major outputs of InfAct.
Results
The InfAct sustainability plan was organized in three main sections: a proposal of a new research infrastructure on population health (the DIPoH), new health information tools and innovative proposals for HIS, and a comprehensive capacity building programme. These activities were carried out in InfAct and are being further developed in the Population Health Information Research Infrastructure (PHIRI). PHIRI is a practical rollout of DIPoH facilitating and generating the best available evidence for research on health and wellbeing of populations as impacted by COVID-19.
Conclusions
The sustainability plan received wide support from Member States and was recognized to have an added value at EU level. Nevertheless, there were several aspects which still need to be considered for the near future such as: (i) a commitment of stable financial and political support by Member States (MSs), (ii) the availability of resources at regional, national and European level to deal with innovations, and (iii) a more direct involvement from EU and international institutions such as the European Centre for Disease Prevention and Control (ECDC), the World Health Organization (WHO) and the Organisation for Economic Cooperation and Development OECD for providing support and sustainable contributions.
Journal Article