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23
result(s) for
"Schad, Philipp"
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Denoising diffusion probabilistic models for 3D medical image generation
by
Kuhl, Christiane
,
Engelhardt, Sandy
,
Khader, Firas
in
639/705/117
,
692/700/1421/1628
,
692/700/1421/1846/2771
2023
Recent advances in computer vision have shown promising results in image generation. Diffusion probabilistic models have generated realistic images from textual input, as demonstrated by DALL-E 2, Imagen, and Stable Diffusion. However, their use in medicine, where imaging data typically comprises three-dimensional volumes, has not been systematically evaluated. Synthetic images may play a crucial role in privacy-preserving artificial intelligence and can also be used to augment small datasets. We show that diffusion probabilistic models can synthesize high-quality medical data for magnetic resonance imaging (MRI) and computed tomography (CT). For quantitative evaluation, two radiologists rated the quality of the synthesized images regarding \"realistic image appearance\", \"anatomical correctness\", and \"consistency between slices\". Furthermore, we demonstrate that synthetic images can be used in self-supervised pre-training and improve the performance of breast segmentation models when data is scarce (Dice scores, 0.91 [without synthetic data], 0.95 [with synthetic data]).
Journal Article
Multiphase CT-based prediction of Child-Pugh classification: a machine learning approach
by
Kuhl, Christiane K.
,
Thüring, Johannes
,
Merhof, Dorit
in
Aged
,
Algorithms
,
Artificial intelligence
2020
Background
To evaluate whether machine learning algorithms allow the prediction of Child-Pugh classification on clinical multiphase computed tomography (CT).
Methods
A total of 259 patients who underwent diagnostic abdominal CT (unenhanced, contrast-enhanced arterial, and venous phases) were included in this retrospective study. Child-Pugh scores were determined based on laboratory and clinical parameters. Linear regression (LR), Random Forest (RF), and convolutional neural network (CNN) algorithms were used to predict the Child-Pugh class. Their performances were compared to the prediction of experienced radiologists (ERs). Spearman correlation coefficients and accuracy were assessed for all predictive models. Additionally, a binary classification in low disease severity (Child-Pugh class A) and advanced disease severity (Child-Pugh class ≥ B) was performed.
Results
Eleven imaging features exhibited a significant correlation when adjusted for multiple comparisons with Child-Pugh class. Significant correlations between predicted and measured Child-Pugh classes were observed (ρ
LA
= 0.35, ρ
RF
= 0.32, ρ
CNN
= 0.51, ρ
ERs
= 0.60;
p
< 0.001). Significantly better accuracies for the prediction of Child-Pugh classes
versus
no-information rate were found for CNN and ERs (
p
≤ 0.034), not for LR and RF (
p
≥ 0.384). For binary severity classification, the area under the curve at receiver operating characteristic analysis was significantly lower (
p
≤ 0.042) for LR (0.71) and RF (0.69) than for CNN (0.80) and ERs (0.76), without significant differences between CNN and ERs (
p
= 0.144).
Conclusions
The performance of a CNN in assessing Child-Pugh class based on multiphase abdominal CT images is comparable to that of ERs.
Journal Article
Comprehensive Assessment of Medial Knee Joint Instability by Valgus Stress MRI
by
Knobe, Matthias
,
Kuhl, Christiane
,
Ciba, Malin
in
biomechanics
,
functionality
,
Joint and ligament injuries
2021
Standard clinical MRI techniques provide morphologic insights into knee joint pathologies, yet do not allow evaluation of ligament functionality or joint instability. We aimed to study valgus stress MRI, combined with sophisticated image post-processing, in a graded model of medial knee joint injury. To this end, eleven human cadaveric knee joint specimens were subjected to sequential injuries to the superficial medial collateral ligament (sMCL) and the anterior cruciate ligament (ACL). Specimens were imaged in 30° of flexion in the unloaded and loaded configurations (15 kp) and in the intact, partially sMCL-deficient, completely sMCL-deficient, and sMCL- and ACL-deficient conditions using morphologic sequences and a dedicated pressure-controlled loading device. Based on manual segmentations, sophisticated 3D joint models were generated to compute subchondral cortical distances for each condition and configuration. Statistical analysis included appropriate parametric tests. The medial compartment opened gradually as a function of loading and injury, especially anteriorly. Corresponding manual reference measurements by two readers confirmed these findings. Once validated in clinical trials, valgus stress MRI may comprehensively quantify medial compartment opening as a functional imaging surrogate of medial knee joint instability and qualify as an adjunct diagnostic tool in the differential diagnosis, therapeutic decision-making, and monitoring of treatment outcomes.
Journal Article
Seeing Beyond Morphology-Standardized Stress MRI to Assess Human Knee Joint Instability
by
Kuhl, Christiane
,
Huppertz, Marc Sebastian
,
Kotowski, Niklas
in
anterior cruciate ligament
,
biomechanical phenomena
,
Knee
2021
While providing the reference imaging modality for joint pathologies, MRI is focused on morphology and static configurations, thereby not fully exploiting the modality’s diagnostic capabilities. This study aimed to assess the diagnostic value of stress MRI combining imaging and loading in differentiating partial versus complete anterior cruciate ligament (ACL)-injury. Ten human cadaveric knee joint specimens were subjected to serial imaging using a 3.0T MRI scanner and a custom-made pressure-controlled loading device. Emulating the anterior-drawer test, joints were imaged before and after arthroscopic partial and complete ACL transection in the unloaded and loaded configurations using morphologic sequences. Following manual segmentations and registration of anatomic landmarks, two 3D vectors were computed between anatomic landmarks and registered coordinates. Loading-induced changes were quantified as vector lengths, angles, and projections on the x-, y-, and z-axis, related to the intact unloaded configuration, and referenced to manual measurements. Vector lengths and projections significantly increased with loading and increasing ACL injury and indicated multidimensional changes. Manual measurements confirmed gradually increasing anterior tibial translation. Beyond imaging of ligament structure and functionality, stress MRI techniques can quantify joint stability to differentiate partial and complete ACL injury and, possibly, compare surgical procedures and monitor treatment outcomes.
Journal Article
In-Situ Cartilage Functionality Assessment Based on Advanced MRI Techniques and Precise Compartmental Knee Joint Loading through Varus and Valgus Stress
by
Kuhl, Christiane
,
Knobe, Matthias
,
Abrar, Daniel Benjamin
in
Arthritis
,
Biomechanics
,
Cartilage
2021
Stress MRI brings together mechanical loading and MRI in the functional assessment of cartilage and meniscus, yet lacks basic scientific validation. This study assessed the response-to-loading patterns of cartilage and meniscus incurred by standardized compartmental varus and valgus loading of the human knee joint. Eight human cadaveric knee joints underwent imaging by morphologic (i.e., proton density-weighted fat-saturated and 3D water-selective) and quantitative (i.e., T1ρ and T2 mapping) sequences, both unloaded and loaded to 73.5 N, 147.1 N, and 220.6 N of compartmental pressurization. After manual segmentation of cartilage and meniscus, morphometric measures and T2 and T1ρ relaxation times were quantified. CT-based analysis of joint alignment and histologic and biomechanical tissue measures served as references. Under loading, we observed significant decreases in cartilage thickness (p < 0.001 (repeated measures ANOVA)) and T1ρ relaxation times (p = 0.001; medial meniscus, lateral tibia; (Friedman test)), significant increases in T2 relaxation times (p ≤ 0.004; medial femur, lateral tibia; (Friedman test)), and adaptive joint motion. In conclusion, varus and valgus stress MRI induces meaningful changes in cartilage and meniscus secondary to compartmental loading that may be assessed by cartilage morphometric measures as well as T2 and T1ρ mapping as imaging surrogates of tissue functionality.
Journal Article
The virtual reference radiologist: comprehensive AI assistance for clinical image reading and interpretation
by
Huppertz, Marc
,
Kuhl, Christiane
,
Yüksel, Can
in
Accuracy
,
Artificial Intelligence
,
Clinical Competence
2024
Objectives
Large language models (LLMs) have shown potential in radiology, but their ability to aid radiologists in interpreting imaging studies remains unexplored. We investigated the effects of a state-of-the-art LLM (GPT-4) on the radiologists’ diagnostic workflow.
Materials and methods
In this retrospective study, six radiologists of different experience levels read 40 selected radiographic [
n
= 10], CT [
n
= 10], MRI [
n
= 10], and angiographic [
n
= 10] studies unassisted (session one) and assisted by GPT-4 (session two). Each imaging study was presented with demographic data, the chief complaint, and associated symptoms, and diagnoses were registered using an online survey tool. The impact of Artificial Intelligence (AI) on diagnostic accuracy, confidence, user experience, input prompts, and generated responses was assessed. False information was registered. Linear mixed-effect models were used to quantify the factors (fixed: experience, modality, AI assistance; random: radiologist) influencing diagnostic accuracy and confidence.
Results
When assessing if the correct diagnosis was among the top-3 differential diagnoses, diagnostic accuracy improved slightly from 181/240 (75.4%, unassisted) to 188/240 (78.3%, AI-assisted). Similar improvements were found when only the top differential diagnosis was considered. AI assistance was used in 77.5% of the readings. Three hundred nine prompts were generated, primarily involving differential diagnoses (59.1%) and imaging features of specific conditions (27.5%). Diagnostic confidence was significantly higher when readings were AI-assisted (
p
> 0.001). Twenty-three responses (7.4%) were classified as hallucinations, while two (0.6%) were misinterpretations.
Conclusion
Integrating GPT-4 in the diagnostic process improved diagnostic accuracy slightly and diagnostic confidence significantly. Potentially harmful hallucinations and misinterpretations call for caution and highlight the need for further safeguarding measures.
Clinical relevance statement
Using GPT-4 as a virtual assistant when reading images made six radiologists of different experience levels feel more confident and provide more accurate diagnoses; yet, GPT-4 gave factually incorrect and potentially harmful information in 7.4% of its responses.
Key Points
The benefits and dangers of GPT-4 for textual assistance in radiologic image interpretation are unclear.
GPT-4’s textual assistance improved radiologists’ diagnostic accuracy from 75 to 78%.
Less experienced radiologists used GPT-4 for guidance on differential diagnoses and imaging findings.
Journal Article
Inter-microbial competition for N and plant NO3− uptake rather than BNI determines soil net nitrification under intensively managed Brachiaria humidicola
2022
Brachiaria humidicola (syn. Urochloa humidicola) has been acknowledged to control soil nitrification through release of nitrification inhibitors (NI), a phenomenon conceptualized as biological nitrification inhibition (BNI). Liming and N fertilization as features of agricultural intensification may suppress BNI performance, due to a decrease in NI exudation, increased NH3 availability and promotion of ammonia oxidizing bacteria (AOB) over archaea (AOA). A 2-year three-factorial pot trial was conducted to investigate the influence of soil pH and soil microbial background (ratio of archaea to bacteria) on BNI performance of B. humidicola. The study verified the capacity of B. humidicola to reduce net nitrification rates by 50 to 85% compared to the non-planted control, irrespective of soil pH and microbial background. The reduction of net nitrification, however, was largely dependent on microbial N immobilization and efficient plant N uptake. A reduction of gross nitrification could not be confirmed for the AOA dominated soil, but possibly contributed to reduced net nitrification rates in the AOB-dominated soil. However, this putative reduction of gross nitrification was attributed to plant-facilitated inter-microbial competition between bacterial heterotrophs and nitrifiers rather than BNI. It was concluded that BNI may play a dominant role in extensive B. humidicola pasture systems, while N immobilization and efficient plant N uptake may display the dominant factors controlling net nitrification rates under intensively managed B. humidicola.
Journal Article
T2 Radiomic Features Are More Sensitive Than Mean T2 for Cartilage Load Response: A Stress MRI Study
2025
Objective: To assess response-to-loading in a human cadaveric knee joint model under different loading conditions before and after meniscectomy Design: In this prospective study, stress magnetic resonance imaging was performed using an MR-compatible loading device and quantitative T2 mapping in unloaded (UL), 0\\({\\deg}\\) neutrally loaded (LN) and 10\\({\\deg}\\) varus loaded (LV) condition before and after meniscectomy. Mean T2 values and four radiomic texture parameters were assessed within the cartilage of medial femur (MF) and medial tibia (MT) for all conditions. Results: Medial joint space width decreased from UL to LN to LV and after meniscectomy (all p<0.05). T2 values did not show any significant dependency on pressure or meniscectomy (all p>0.05). The radiomic parameter variance could assess loading induced textural T2 changes in the MF (UL vs. LN: p=0.042; UL vs. LV: p<0.001; LN vs. LV: p=0.022), and, in part, in the MT (LN vs. LV: p<0.013). Meniscectomy did not significantly alter the T2 mean values or radiomic parameters, respectively. Conclusions: T2-based radiomic features were more sensitive to assess cartilage response to loading than T2-mapping alone.
Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Generation
by
Kuhl, Christiane
,
Engelhardt, Sandy
,
Khader, Firas
in
Artificial intelligence
,
Computed tomography
,
Computer vision
2023
Recent advances in computer vision have shown promising results in image generation. Diffusion probabilistic models in particular have generated realistic images from textual input, as demonstrated by DALL-E 2, Imagen and Stable Diffusion. However, their use in medicine, where image data typically comprises three-dimensional volumes, has not been systematically evaluated. Synthetic images may play a crucial role in privacy preserving artificial intelligence and can also be used to augment small datasets. Here we show that diffusion probabilistic models can synthesize high quality medical imaging data, which we show for Magnetic Resonance Images (MRI) and Computed Tomography (CT) images. We provide quantitative measurements of their performance through a reader study with two medical experts who rated the quality of the synthesized images in three categories: Realistic image appearance, anatomical correctness and consistency between slices. Furthermore, we demonstrate that synthetic images can be used in a self-supervised pre-training and improve the performance of breast segmentation models when data is scarce (dice score 0.91 vs. 0.95 without vs. with synthetic data). The code is publicly available on GitHub: https://github.com/FirasGit/medicaldiffusion.