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"Scherrer, Samuel"
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Twenty-first century regional temperature response in Chile based on empirical-statistical downscaling
2021
Local scale estimates of temperature change in the twenty-first century are necessary for informed decision making in both the public and private sector. In order to generate such estimates for Chile, weather station data of the Dirección Meteorológica de Chile are used to identify large-scale predictors for local-scale temperature changes and construct individual empirical-statistical models for each station. The geographical coverage of weather stations ranges from Arica in the North to Punta Arenas in the South. Each model is trained in a cross-validated stepwise linear multiple regression procedure based on (24) weather station records and predictor time series derived from ERA-Interim reanalysis data. The time period 1979–2000 is used for training, while independent data from 2001 to 2015 serves as a basis for assessing model performance. The resulting transfer functions for each station are then directly coupled to MPI-ESM simulations for future climate change under emission scenarios RCP2.6, RCP4.5 and RCP 8.5 to estimate the local temperature response until 2100 A.D. Our investigation into predictors for local scale temperature changes support established knowledge of the main drivers of Chilean climate, i.e. a strong influence of the El Niño Southern Oscillation in northern Chile and frontal system-governed climate in central and southern Chile. Temperature downscaling yields high prediction skill scores (ca. 0.8), with highest scores for the mid-latitudes. When forced with MPI-ESM simulations, the statistical models predict local temperature deviations from the 1979–2015 mean that range between − 0.5–2 K, 0.5–3 K and 2–7 K for RCP2.6, RCP4.5 and RCP8.5 respectively.
Journal Article
Assessing the sensitivity of multi-frequency passive microwave vegetation optical depth to vegetation properties
by
Zotta, Ruxandra-Maria
,
Dorigo, Wouter A.
,
van der Schalie, Robin
in
Algorithms
,
Biomass
,
C band
2023
Vegetation attenuates the microwave emission from the land surface. The strength of this attenuation is quantified in models in terms of the parameter vegetation optical depth (VOD) and is influenced by the vegetation mass, structure, water content, and observation wavelength. Earth observation satellite sensors operating in the microwave frequencies are used for global VOD retrievals, enabling the monitoring of vegetation at large scales. VOD has been used to determine above-ground biomass, monitor phenology, or estimate vegetation water status. VOD can be also used for constraining land surface models or modelling wildfires at large scales. Several VOD products exist, differing by frequency/wavelength, sensor, and retrieval algorithm. Numerous studies present correlations or empirical functions between different VOD datasets and vegetation variables such as the normalized difference vegetation index, leaf area index, gross primary production, biomass, vegetation height, or vegetation water content. However, an assessment of the joint impact of land cover, vegetation biomass, leaf area, and moisture status on the VOD signal is challenging and has not yet been done. This study aims to interpret the VOD signal as a multi-variate function of several descriptive vegetation variables. The results will help to select VOD at the most suitable wavelength for specific applications and can guide the development of appropriate observation operators to integrate VOD with large-scale land surface models. Here we use VOD from the Land Parameter Retrieval Model (LPRM) in the Ku, X, and C bands from the harmonized Vegetation Optical Depth Climate Archive (VODCA) dataset and L-band VOD derived from Soil Moisture and Ocean Salinity (SMOS) and Soil Moisture Active Passive (SMAP) sensors. The leaf area index, live-fuel moisture content, above-ground biomass, and land cover are able to explain up to 93 % and 95 % of the variance (Nash–Sutcliffe model efficiency coefficient) in 8-daily and monthly VOD within a multi-variable random forest regression. Thereby, the regression reproduces spatial patterns of L-band VOD and spatial and temporal patterns of Ku-, X-, and C-band VOD. Analyses of accumulated local effects demonstrate that Ku-, X-, and C-band VOD are mostly sensitive to the leaf area index, and L-band VOD is most sensitive to above-ground biomass. However, for all VODs the global relationships with vegetation properties are non-monotonic and complex and differ with land cover type. This indicates that the use of simple global regressions to estimate single vegetation properties (e.g. above-ground biomass) from VOD is over-simplistic.
Journal Article
Impact of Design Factors for ESA CCI Satellite Soil Moisture Data Assimilation over Europe
by
Gruber, Alexander
,
Scherrer, Samuel
,
Bechtold, Michel
in
Agricultural land
,
Climate change
,
Data assimilation
2023
In this study, soil moisture retrievals of the combined active–passive ESA Climate Change Initiative (CCI) soil moisture product are assimilated into the Noah-MP land surface model over Europe using a one-dimensional ensemble Kalman filter and an 18-yr study period. The performance of the data assimilation (DA) system is evaluated by comparing it with a model-only experiment (at in situ sites) and by assessing statistics of innovations and increments as DA diagnostics (over the entire domain). For both assessments, we explore the impact of three design choices, resulting in the following insights. 1) The magnitude of the assumed observation errors strongly affects the skill improvements evaluated against in situ stations and internal diagnostics. 2) Choosing between climatological or monthly cumulative distribution function matching as the observation bias correction method only has a marginal effect on the in situ skill of the DA system. However, the internal diagnostics suggest a more robust system parameterization if the observations are rescaled monthly. 3) The choice of atmospheric reanalysis dataset to force the land surface model affects the model-only skill and the DA skill improvements. The model-only skill is higher with input from the MERRA-2 than with input from the ERA5 reanalysis, resulting in larger DA skill improvements for the latter. Additionally, we show that the added value of the DA strongly depends on the quality of the satellite retrievals and land cover, with the most substantial soil moisture skill improvements occurring over croplands and skill degradation occurring over densely forested areas.
Journal Article
Assimilation of Sentinel-1 Backscatter into a Land Surface Model with River Routing and Its Impact on Streamflow Simulations in Two Belgian Catchments
by
De Lannoy, Gabrielle
,
Baguis, Pierre
,
Gruber, Alexander
in
Backscatter
,
Backscattering
,
Catchment scale
2023
Accurate streamflow simulations rely on good estimates of the catchment-scale soil moisture distribution. Here, we evaluated the potential of Sentinel-1 backscatter data assimilation (DA) to improve soil moisture and streamflow estimates. Our DA system consisted of the Noah-MP land surface model coupled to the HyMAP river routing model and the water cloud model as a backscatter observation operator. The DA system was set up at 0.01° resolution for two contrasting catchments in Belgium: (i) the Demer catchment dominated by agriculture and (ii) the Ourthe catchment dominated by mixed forests. We present the results of two experiments with an ensemble Kalman filter updating either soil moisture only or soil moisture and leaf area index (LAI). The DA experiments covered the period from January 2015 through August 2021 and were evaluated with independent rainfall error estimates based on station data, LAI from optical remote sensing, soil moisture retrievals from passive microwave observations, and streamflow measurements. Our results indicate that the assimilation of Sentinel-1 backscatter observations can partly correct errors in surface soil moisture due to rainfall errors and overall improve surface soil moisture estimates. However, updating soil moisture and LAI simultaneously did not bring any benefit over updating soil moisture only. Our results further indicate that streamflow estimates can be improved through Sentinel-1 DA in a catchment with strong soil moisture–runoff coupling, as observed for the Ourthe catchment, suggesting that there is potential for Sentinel-1 DA even for forested catchments.
Journal Article
Bias-blind and bias-aware assimilation of leaf area index into the Noah-MP land surface model over Europe
2023
Data assimilation (DA) of remotely sensed leaf area index (LAI) can help to improve land surface model estimates of energy, water, and carbon variables. So far, most studies have used bias-blind LAI DA approaches, i.e. without correcting for biases between model forecasts and observations. This might hamper the performance of the DA algorithms in the case of large biases in observations or simulations or both. We perform bias-blind and bias-aware DA of Copernicus Global Land Service LAI into the Noah-MP land surface model forced by the ERA5 reanalysis over Europe in the 2002–2019 period, and we evaluate how the choice of bias correction affects estimates of gross primary productivity (GPP), evapotranspiration (ET), runoff, and soil moisture. In areas with a large LAI bias, the bias-blind LAI DA leads to a reduced bias between observed and modelled LAI, an improved agreement of GPP, ET, and runoff estimates with independent products, but a worse agreement of soil moisture estimates with the European Space Agency Climate Change Initiative (ESA CCI) soil moisture product. While comparisons to in situ soil moisture in areas with weak bias indicate an improvement of the representation of soil moisture climatology, bias-blind LAI DA can lead to unrealistic shifts in soil moisture climatology in areas with strong bias. For example, when the assimilated LAI data in irrigated areas are much higher than those simulated without any irrigation activated, LAI will be increased and soil moisture will be depleted. Furthermore, the bias-blind LAI DA produces a pronounced sawtooth pattern due to model drift between DA updates, because each update pushes the Noah-MP leaf model to an unstable state. This model drift also propagates to short-term estimates of GPP and ET and to internal DA diagnostics that indicate a suboptimal DA system performance. The bias-aware approaches based on a priori rescaling of LAI observations to the model climatology avoid the negative effects of the bias-blind assimilation. They retain the improvements in GPP anomalies from the bias-blind DA but forego improvements in the root mean square deviations (RMSDs) of GPP, ET, and runoff. As an alternative to rescaling, we discuss the implications of our results for model calibration or joint parameter and state update DA, which has the potential to combine bias reduction with optimal DA system performance.
Journal Article
Numerical Simulations of Regolith Sampling Processes
by
Kley, Wilhelm
,
Speith, Roland
,
Scherrer, Samuel
in
Asteroid missions
,
Brushes
,
Computational fluid dynamics
2017
We present recent improvements in the simulation of regolith sampling processes in microgravity using the numerical particle method smooth particle hydrodynamics (SPH). We use an elastic-plastic soil constitutive model for large deformation and failure flows for dynamical behaviour of regolith. In the context of projected small body (asteroid or small moons) sample return missions, we investigate the efficiency and feasibility of a particular material sampling method: Brushes sweep material from the asteroid's surface into a collecting tray. We analyze the influence of different material parameters of regolith such as cohesion and angle of internal friction on the sampling rate. Furthermore, we study the sampling process in two environments by varying the surface gravity (Earth's and Phobos') and we apply different rotation rates for the brushes. We find good agreement of our sampling simulations on Earth with experiments and provide estimations for the influence of the material properties on the collecting rate.
A smooth particle hydrodynamics code to model collisions between solid, self-gravitating objects
by
Kley, Wilhelm
,
Speith, Roland
,
Maindl, Thomas I
in
Brittle materials
,
Central processing units
,
Computational fluid dynamics
2016
Modern graphics processing units (GPUs) lead to a major increase in the performance of the computation of astrophysical simulations. Owing to the different nature of GPU architecture compared to traditional central processing units (CPUs) such as x86 architecture, existing numerical codes cannot be easily migrated to run on GPU. Here, we present a new implementation of the numerical method smooth particle hydrodynamics (SPH) using CUDA and the first astrophysical application of the new code: the collision between Ceres-sized objects. The new code allows for a tremendous increase in speed of astrophysical simulations with SPH and self-gravity at low costs for new hardware. We have implemented the SPH equations to model gas, liquids and elastic, and plastic solid bodies and added a fragmentation model for brittle materials. Self-gravity may be optionally included in the simulations and is treated by the use of a Barnes-Hut tree. We find an impressive performance gain using NVIDIA consumer devices compared to our existing OpenMP code. The new code is freely available to the community upon request.
DuMu\\(^\\text{x}\\) 3 -- an open-source simulator for solving flow and transport problems in porous media with a focus on model coupling
by
Hommel, Johannes
,
Becker, Beatrix
,
Schneider, Martin
in
Computer simulation
,
Finite volume method
,
Modularity
2019
We present version 3 of the open-source simulator for flow and transport processes in porous media DuMu\\(^\\text{x}\\). DuMu\\(^\\text{x}\\) is based on the modular C++ framework Dune (Distributed and Unified Numerics Environment) and is developed as a research code with a focus on modularity and reusability. We describe recent efforts in improving the transparency and efficiency of the development process and community-building, as well as efforts towards quality assurance and reproducible research. In addition to a major redesign of many simulation components in order to facilitate setting up complex simulations in DuMu\\(^\\text{x}\\), version 3 introduces a more consistent abstraction of finite volume schemes. Finally, the new framework for multi-domain simulations is described, and three numerical examples demonstrate its flexibility.
Observed snow depth trends in the European Alps: 1971 to 2019
2021
The European Alps stretch over a range of climate zones which affect the spatial distribution of snow. Previous analyses of station observations of snow were confined to regional analyses. Here, we present an Alpine-wide analysis of snow depth from six Alpine countries – Austria, France, Germany, Italy, Slovenia, and Switzerland – including altogether more than 2000 stations of which more than 800 were used for the trend assessment. Using a principal component analysis and k-means clustering, we identified five main modes of variability and five regions which match the climatic forcing zones: north and high Alpine, north-east, north-west, south-east, and south and high Alpine. Linear trends of monthly mean snow depth between 1971 and 2019 showed decreases in snow depth for most stations from November to May. The average trend among all stations for seasonal (November to May) mean snow depth was −8.4 % per decade, for seasonal maximum snow depth −5.6 % per decade, and for seasonal snow cover duration −5.6 % per decade. Stronger and more significant trends were observed for periods and elevations where the transition from snow to snow-free occurs, which is consistent with an enhanced albedo feedback. Additionally, regional trends differed substantially at the same elevation, which challenges the notion of generalizing results from one region to another or to the whole Alps. This study presents an analysis of station snow depth series with the most comprehensive spatial coverage in the European Alps to date.
Journal Article
RNA timestamps identify the age of single molecules in RNA sequencing
2021
Current approaches to single-cell RNA sequencing (RNA-seq) provide only limited information about the dynamics of gene expression. Here we present RNA timestamps, a method for inferring the age of individual RNAs in RNA-seq data by exploiting RNA editing. To introduce timestamps, we tag RNA with a reporter motif consisting of multiple MS2 binding sites that recruit the adenosine deaminase ADAR2 fused to an MS2 capsid protein. ADAR2 binding to tagged RNA causes A-to-I edits to accumulate over time, allowing the age of the RNA to be inferred with hour-scale accuracy. By combining observations of multiple timestamped RNAs driven by the same promoter, we can determine when the promoter was active. We demonstrate that the system can infer the presence and timing of multiple past transcriptional events. Finally, we apply the method to cluster single cells according to the timing of past transcriptional activity. RNA timestamps will allow the incorporation of temporal information into RNA-seq workflows.
The age of individual RNA molecules at 1-h resolution is inferred by measuring A-to-I editing.
Journal Article