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result(s) for
"Schindler, Florian"
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Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity
by
Chaturvedi Palak
,
Weckwerth Wolfram
,
Brenner, Martin
in
Biological activity
,
Cereal crops
,
Composition
2022
Roots secrete a vast array of low molecular weight compounds into the soil broadly referred to as root exudates. It is a key mechanism by which plants and soil microbes interact in the rhizosphere. The effect of drought stress on the exudation process and composition is rarely studied, especially in cereal crops. This study focuses on comparative metabolic profiling of the exudates from sensitive and tolerant genotypes of pearl millet after a period of drought stress. We employed a combined platform of gas and liquid chromatography coupled to mass spectrometry to cover both primary and secondary metabolites. The results obtained demonstrate that both genotype and drought stress have a significant impact on the concentration and composition of root exudates. The complexity and function of these differential root exudates are discussed. To reveal the potential effect of root exudates on the soil microbial community after a period of drought stress, we also tested for biological nitrification inhibition (BNI) activity. The analysis revealed a genotype-dependent enhancement of BNI activity after a defined period of drought stress. In parallel, we observed a genotype-specific relation of elongated root growth and root exudation under drought stress. These data suggest that the drought stress-dependent change in root exudation can manipulate the microbial soil communities to adapt and survive under harsh conditions.
Journal Article
Phyllosphere symbiont promotes plant growth through ACC deaminase production
2023
Plant growth promoting bacteria can confer resistance to various types of stress and increase agricultural yields. The mechanisms they employ are diverse. One of the most important genes associated with the increase in plant biomass and stress resistance is
acdS
, which encodes a 1-aminocyclopropane-1-carboxylate- or ACC-deaminase. The non-proteinogenic amino acid ACC is the precursor and means of long-distance transport of ethylene, a plant hormone associated with growth arrest. Expression of
acdS
reduces stress induced ethylene levels and the enzyme is abundant in rhizosphere colonizers. Whether ACC hydrolysis plays a role in the phyllosphere, both as assembly cue and in growth promotion, remains unclear. Here we show that
Paraburkholderia dioscoreae
Msb3, a yam phyllosphere symbiont, colonizes the tomato phyllosphere and promotes plant growth by action of its ACC deaminase. We found that
acdS
is required for improved plant growth but not for efficient leaf colonization. Strain Msb3 readily proliferates on the leaf surface of tomato, only occasionally spreading to the leaf endosphere through stomata. The strain can also colonize the soil or medium around the roots but only spreads into the root if the plant is wounded. Our results indicate that the degradation of ACC is not just an important trait of plant growth promoting rhizobacteria but also one of leaf dwelling phyllosphere bacteria. Manipulation of the leaf microbiota by means of spray inoculation may be more easily achieved than that of the soil. Therefore, the application of ACC deaminase containing bacteria to the phyllosphere may be a promising strategy to increasing plant stress resistance, pathogen control, and harvest yields.
Journal Article
Clinical relevance of potential self-medication drug interactions in antineoplastic and immune-modulating therapy among online pharmacy customers
by
Schinkoethe, Timo
,
Kolben, Thomas
,
Wuerstlein, Rachel
in
Community
,
Drug interactions
,
Drug stores
2023
Background:
Modern oral antineoplastic and immune-modulating drugs offer an array of therapeutic advantages, and yet pose challenges in daily use for patients, physicians and pharmacists. In contrast to intravenous administration, these drugs are not subject to direct medical control. Recently, we have seen a huge rise in sales of non-prescription over-the-counter (OTC) medicines via the internet without any advice from a healthcare professional.
Objectives:
The aim of this study was to investigate whether the risk of known potential drug-drug interactions between modern oral antineoplastic and immune-modulating drugs and OTC drugs differs between sales in traditional community pharmacies versus online pharmacies.
Design:
Real-life sales data from community and online pharmacies were used as basis for the analysis.
Methods:
We determined the most frequently purchased antineoplastic and immune-modulating drug-substances in 14 local community pharmacies within the Munich area, Germany and identified the OTC substance groups that could potentially cause interactions with oncological therapies. Using sales data from 11 local community pharmacies and three online pharmacies, we investigated whether OTC purchases differed between the two sales channels.
Results:
We identified 10 relevant OTC substance classes and detected significant variations in patients’ preferred sales channels between the drug classes. Certain OTC drugs, which seem to be bought more often over the internet, pose risks during antineoplastic and immune-modulating therapy.
Conclusion:
Patients should therefore be proactively made aware of the corresponding risks in order not to jeopardize the activity of the antineoplastic and immune-modulating drugs and thus the success of their therapy.
Plain language summary
Comparing Community and Online Pharmacies: Investigating Potential Interactions Between Cancer and Immune-Modulating Drugs with Over-the-Counter Medications, and the Importance of Patient Awareness and Healthcare Professional Guidance in Minimizing Adverse Effects and Maintaining Treatment Efficacy
Modern anticancer and immune-modulating drugs have the advantage of often being taken orally, but they present other challenges in daily use. Unlike intravenously administered drugs, these are usually not administered by a physician but taken by the patient at home. In these cases, patients may be more likely to buy and take self-medicating drugs over-the-counter (OTC) without consulting a healthcare professional.
This study aimed to investigate whether there is a different risk of drug interactions between cancer or immune-modulating drugs and OTC drugs when bought in a community pharmacy versus an online pharmacy. Therefore, we looked at the most common cancer and immune-modulating drugs purchased in 14 local community pharmacies in Munich and identified which OTC drugs could cause problems when used simultaneously. Additionally, we analyzed the sales data from 11 local and 3 online pharmacies to determine if people were more likely to buy different OTC drugs from the two types of pharmacies.
As a result, this study showed 10 relevant OTC drug types that potentially cause problems and influence effectiveness when used with cancer or immune-modulating drugs. Furthermore, we observed that some of these OTC drugs were purchased more often online than in community pharmacies and thus are more distant from the control of a physician or pharmacist.
It is therefore essential for patients to be aware of the risks associated with easily accessible OTC drugs in combination with their cancer or immune-modulating medication, as serious side effects or decreased efficacy may develop. Patients should remember to consult their doctor or pharmacist if there is any uncertainty about potential drug interactions. At the same time, healthcare professionals should proactively draw their patients’ attention to these potential risks, especially when purchasing online.
Journal Article
Norbergenin prevents LPS-induced inflammatory responses in macrophages through inhibiting NFκB, MAPK and STAT3 activation and blocking metabolic reprogramming
by
Weckwerth, Wolfram
,
Li, Wan
,
Brenner, Martin
in
anti-inflammation
,
Anti-inflammatory agents
,
Anti-Inflammatory Agents - pharmacology
2023
Inflammation is thought to be a key cause of many chronic diseases and cancer. However, current therapeutic agents to control inflammation have limited long-term use potential due to various side-effects. This study aimed to examine the preventive effects of norbergenin, a constituent of traditional anti-inflammatory recipes, on LPS-induced proinflammatory signaling in macrophages and elucidate the underlying mechanisms by integrative metabolomics and shotgun label-free quantitative proteomics platforms. Using high-resolution mass spectrometry, we identified and quantified nearly 3000 proteins across all samples in each dataset. To interpret these datasets, we exploited the differentially expressed proteins and conducted statistical analyses. Accordingly, we found that LPS-induced production of NO, IL1β, TNFα, IL6 and iNOS in macrophages was alleviated by norbergenin via suppressed activation of TLR2 mediated NFκB, MAPKs and STAT3 signaling pathways. In addition, norbergenin was capable of overcoming LPS-triggered metabolic reprogramming in macrophages and restrained the facilitated glycolysis, promoted OXPHOS, and restored the aberrant metabolites within the TCA cycle. This is linked to its modulation of metabolic enzymes to support its anti-inflammatory activity. Thus, our results uncover that norbergenin regulates inflammatory signaling cascades and metabolic reprogramming in LPS stimulated macrophages to exert its anti-inflammatory potential.
Journal Article
Clusia genomes shed light on the evolution and diversity of crassulacean acid metabolism physiotypes
2026
More than 200 years ago, Alexander von Humboldt described a tree of the genus
Clusia
for its ability to perform crassulacean acid metabolism (CAM). This drought-adaptive metabolism allows plants to maintain photosynthesis under water limitation by temporally separating CO₂ uptake and fixation. The diversity of CAM physiotypes has fueled a debate about evolutionary constraints and the feasibility of engineering CAM into C₃ crops. The genus
Clusia
displays an exceptional diversity of photosynthetic physiotypes, yet genome sequences and genomic mechanisms generating this diversity remain unresolved. Here, we sequence and compare the genomes of three
Clusia
species spanning weak, inducible, and strong CAM. We show that polyploidization followed by transposon-mediated genic diploidization could have shaped CAM-related gene families, particularly those controlling phosphoenol-pyruvate recycling via phosphorolytic leaf starch metabolism. Our results indicate that whole-genome duplication coupled to diploidization might have driven diversification of CAM physiotypes in
Clusia
, providing a genomic framework for understanding CAM diversity and evolution.
Clusia
species exhibit diverse photosynthetic physiotypes. The authors present genome assemblies for
C. major
(weak CAM),
C. minor
s.l. (facultative CAM), and
C. rosea
(strong CAM), and speculate that polyploidization and subsequent diploidization could have shaped the emergence of extant C3 + CAM physiotypes.
Journal Article
Propagation of Crystal Defects during Directional Solidification of Silicon via Induction of Functional Defects
by
Patricia Krenckel
,
Noritaka Usami
,
Yusuke Hayama
in
Cellular structure
,
Crystal defects
,
Crystal structure
2021
The introduction of directional solidified cast mono silicon promised a combination of the cheaper production via a casting process with monocrystalline material quality, but has been struggling with high concentration of structural defects. The SMART approach uses functional defects to maintain the monocrystalline structure with low dislocation densities. In this work, the feasibility of the SMART approach is shown for larger ingots. A G2 sized crystal with SMART and cast mono silicon parts has been analyzed regarding the structural defects via optical analysis, crystal orientation, and etch pit measurements. Photoluminescence measurements on passivated and processed samples were used for characterization of the electrical material quality. The SMART approach has successfully resulted in a crystal with mono area share over 90% and a confinement of dislocation structures in the functional defect region over the whole ingot height compared to a mono area share of down to 50% and extending dislocation tangles in the standard cast mono Si. Cellular structures in photoluminescence measurements could be attributed to cellular dislocation patterns. The SMART Si material showed very high and most homogeneous lifetime values enabling solar cell efficiencies up to 23.3%.
Journal Article
A Universal Picture of Chromophores in π-Conjugated Polymers Derived from Single-Molecule Spectroscopy
by
Lupton, John M.
,
El-Sayed, Mostafa A.
,
Feldmann, Jochen
in
Atoms & subatomic particles
,
Chromophores
,
Emission spectra
2004
Single-molecule spectroscopy can provide insight into the fundamental photophysics of large macromolecules containing tens of thousands of carbon atoms by circumventing disorder broadening. We apply this technique to comparatively ordered ladder-type poly(para-phenylene) and highly disordered poly(phenylene-vinylene) (PPV), both of which are materials of substantial technological interest. Identical spectroscopic features are observed on the single-chromophore level, independent of the chemical structure or the chain morphology. Both materials exhibit narrow fluorescence lines down to 0.5 nm wide, which we attribute to the single-chromophore zero-phonon line, accompanied by a discrete vibronic progression providing a signature of the chemical structure. The chromophore units display spectral diffusion, giving rise to dynamic disorder on the scale of the linewidth. Although the energetic range of spectral diffusion is small, it can influence intramolecular excitation energy transfer and thus the overall molecular emission. The spectral diffusion dynamics of single chromophores are identical in both material systems and follow a universal Gaussian distribution. In the case of emission from multiple chromophores situated on the molecule, which we observe for PPV, spectral diffusion follows Lorentzian-like statistics. The fundamental difference between the two materials is the possibility of coherent interchromophoric coupling in PPV, resulting in strong spectral broadening caused by aggregation or super-radiance. Such behavior is absent in the ladder-type polymers, where the linewidth of the emissive species is identical for all molecules. Our results demonstrate that structure-property correlations in conjugated polymers derive mainly from chain morphology rather than chromophoric properties and should be considered extrinsic in nature.
Journal Article
How single conjugated polymer molecules respond to electric fields
by
Lupton, John M.
,
Feldmann, Jochen
,
Schindler, Florian
in
Asymmetry
,
Biomaterials
,
Chemistry and Materials Science
2006
Conjugated polymers find applications in a range of devices such as light-emitting diodes, field-effect transistors and solar cells. The elementary electronic response of these semiconductors to electric fields is understood in terms of nanoscale perturbations of charge density. We demonstrate a general breaking of spatial charge symmetry by considering the linear Stark effect in the emission of single chromophores on individual chains. Spectral shifts of several nanometres occur due to effective dipoles exceeding 10 D. Although the electric field does not ionize the exciton, some molecules exhibit field-induced intensity modulations. This quenching illustrates the equivalence of charge symmetry breaking and polaron-pair or charge-transfer-state formation, and provides a microscopic picture of permanent charging, which leads to doping and exciton dissociation in actual devices. In addition to using this tuneable emission in single-photon electro-optic modulators, hysteresis in the Stark shift suggests a route to designing nanoscale memory elements such as molecular switches.
Journal Article
Natural variation of the wheat root exudate metabolome and its influence on biological nitrification inhibition activity
by
Mir, Reyazul Rouf
,
Bachmann, Gert
,
Schleper, Christa
in
Agricultural ecosystems
,
Agricultural production
,
agroecosystems
2025
Summary Excessive nitrogen use and low nitrogen use efficiency (NUE) in current agroecosystems are disrupting the global nitrogen cycle. Chemical inhibitors offer only temporary relief, while plant‐derived biological nitrification inhibitors (BNIs) remain safer but underexplored. Identifying biological nitrification inhibition (BNI) traits in nitrogen‐demanding crops like wheat is key to improving sustainability. In this study, a combined GC‐ and LC–MS platform was used to determine the metabolome of the root exudates of 44 diverse wheat genotypes originating from India and Austria. With more than 6000 metabolic features, a pronounced genotype‐specific variation, a clear geographic pattern and an unexpected complexity of the root exudate metabolome were observed. A novel high‐throughput assay utilizing diverse ammonia‐oxidizing bacteria (AOB) and archaea (AOA) was developed for rapid BNI testing, highlighting distinct inhibition and even growth stimulation capacities between genotypes. Network analysis and advanced machine and deep learning analysis identified combinations of 32 metabolites linked to high BNI activity, including phenylpropanoids sinapinic acid, syringic acid and others, as well as glycosylated flavones isoschaftoside and others. This indicates that the concurrent presence of specific metabolites, rather than a single compound, drives nitrification inhibition in the rhizosphere. Variation in BNI activity among wheat genotypes, classified as either spring or winter types, suggests that root architecture modulates the dynamics of root exudation and the potential for nitrification inhibition. The unique combination of high‐throughput metabolomics analysis and the BNI fast‐track assay allows for screening of large germplasm collections as an essential requirement to introduce BNI and related NUE traits into modern breeding programmes.
Journal Article
Scalar systemic risk measures and Aumann-Shapley allocations
2022
We study two different contributions to the theory of (scalar) systemic risk measures. Namely the first aggregate or axiomatic approach and the first inject capital approach. For this purpose we establish a general framework, which is rich enough to embed both approaches. It turns out that in most relevant situations systemic risk measures of the first inject capital approach have a representation in the more general axiomatic approach. Moreover, we study capital allocation rules (CARs). In both situations there exist canonical ways to answer the capital allocation problem. Additionally, a capital allocation rule (CAR) in the spirit of Aumann-Shapley is introduced, which gives us the opportunity to compute systemic capital allocations regardless of the risk measurement approach. This CAR also serves as an instrument to compare both approaches and to identify commonalities.