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Horizontal Gene Transfer (HGT) is a phenomenon of DNA transfer between organisms that does not involve a parent-offspring relationship. HGT is believed to play an important role in all groups of organisms, including plants, and especially in parasites. Here we describe a chain of transfers from Cuscuta (Convolvulaceae) to Orobanche rigens (Orobanchaceae)—both parasitic plants—via a host belonging to tribe Genisteae (Fabaceae). During its “journey” between genomes, the transferred sequence, which we named Pytheas , was altered by deletions, additions of new segments from the current genome, substitutions, and rearrangements. This is the first robustly documented case of a multi-step transfer pathway—involving one IGT and two HGTs—connecting three plant species. Specifically, this system involves a host plant mediated gene flow between two distinct parasites without involvement of transposable elements, the cox1 intron, or other vectors. This case also demonstrates how host-parasite interactions can facilitate the spread of genetic material between evolutionarily distant lineages.

The broomrapes, Orobanche sensu lato (Orobanchaceae), are common root parasites found across Eurasia, Africa and the Americas. All species native to the western hemisphere, recognized as Orobanche sections Gymnocaulis and Nothaphyllon, form a clade that has a centre of diversity in western North America, but also includes four disjunct species in central and southern South America. The wide ecological distribution coupled with moderate taxonomic diversity make this clade a valuable model system for studying the role, if any, of host-switching in driving the diversification of plant parasites. Two spacer regions of ribosomal nuclear DNA (ITS + ETS), three plastid regions and one low-copy nuclear gene were sampled from 163 exemplars of Orobanche from across the native geographic range in order to infer a detailed phylogeny. Together with comprehensive data on the parasites' native host ranges, associations between phylogenetic lineages and host specificity are tested. Within the two currently recognized species of O. sect. Gymnocaulis, seven strongly supported clades were found. While commonly sympatric, members of these clades each had unique host associations. Strong support for cryptic host-specific diversity was also found in sect. Nothaphyllon, while other taxonomic species were well supported. We also find strong evidence for multiple amphitropical dispersals from central North America into South America. Host-switching is an important driver of diversification in western hemisphere broomrapes, where host specificity has been grossly underestimated. More broadly, host specificity and host-switching probably play fundamental roles in the speciation of parasitic plants.

Recent phylogenetic studies support a monophyletic clade of New World broomrapes (Orobanche sects. Gymnocaulis and Nothaphyllon) sister to the Old World genus Phelipanche. I place the New World taxa in the genus Aphyllon, propose 21 new combinations, and provide a list of currently accepted taxa.

How plant-associated microbiota are shaped by, and potentially contribute to, the unique ecology and heterotrophic life history of parasitic plants is relatively unknown. Here, we investigate the leaf and root bacterial communities of the root holoparasite Orobanche hederae and its host Hedera spp. from natural populations. Root bacteria inhabiting Orobanche were less diverse, had fewer co-associations, and displayed increased compositional similarity to leaf bacteria relative to Hedera. Overall, Orobanche bacteria exhibited significant congruency with Hedera root bacteria across sites, but not the surrounding soil. Infection had localized and systemic effects on Hedera bacteria, which included effects on the abundance of individual taxa and root network properties. Collectively, our results indicate that the parasitic plant microbiome is derived but distinct from the host plant microbiota, exhibits increased homogenization between shoot and root tissues, and displays far fewer co-associations among individual bacterial members. Host plant infection is accompanied by modest changes of associated microbiota at both local and systemic scales compared with uninfected individuals. Our results are a first step towards extending the growing insight into the assembly and function of the plant microbiome to include the ecologically unique but often overlooked guild of heterotrophic plants.

Foundational studies of chloroplast genome (plastome) evolution in parasitic plants have focused on broad trends across large clades, particularly among the Orobanchaceae, a species-rich and ecologically diverse family of root parasites. However, the extent to which such patterns and processes of plastome evolution, such as stepwise gene loss following the complete loss of photosynthesis (shift to holoparasitism), are detectable at shallow evolutionary time scale is largely unknown. We used genome skimming to assemble eight chloroplast genomes representing complete taxonomic sampling of Aphyllon sect. Aphyllon, a small clade within the Orobanchaceae that evolved approximately 6 Ma, long after the origin of holoparasitism. We show substantial plastome reduction occurred in the stem lineage, but subsequent change in plastome size, gene content, and structure has been relatively minimal, albeit detectable. This lends additional fine-grained support to existing models of stepwise plastome reduction in holoparasitic plants. Additionally, we report phylogenetic evidence based on an rbcL gene tree and assembled 60+ kb fragments of the Aphyllon epigalium mitochondrial genome indicating host-to-parasite horizontal gene transfers (hpHGT) of several genes originating from the plastome of an ancient Galium host into the mitochondrial genome of a recent common ancestor of A. epigalium. Ecologically, this evidence of hpHGT suggests that the host–parasite associations between Galium and A. epigalium have been stable at least since its subspecies diverged hundreds of thousands of years ago.

Exoplanet surveys have shown a class of abundant exoplanets smaller than Neptune on close, <100-day orbits 1 , 2 , 3 – 4 . These planets form two populations separated by a natural division at about 1.8  R ⊕ termed the radius valley. It is uncertain whether these populations arose from separate dry versus water-rich formation channels, evolved apart because of long-term atmospheric loss or a combination of both 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 – 14 . Here we report observations of ongoing hydrogen loss from two sibling planets, TOI-776 b (1.85 ± 0.13  R ⊕ ) and TOI-776 c (2.02 ± 0.14  R ⊕ ), the sizes of which near the radius valley and mature (1–4 Gyr) age make them valuable for investigating the origins of the divided population of which they are a part. During the transits of these planets, absorption appeared against the Lyman-α emission of the host star, compatible with hydrogen escape at rates equivalent to 0.03–0.6% and 0.1–0.9% of the total mass per billion years of each planet, respectively. Observations of the outer planet, TOI-776 c, are incompatible with an outflow of dissociated steam, suggesting both it and its inner sibling formed in a dry environment. These observations support the strong role of hydrogen loss in the evolution of close-orbiting sub-Neptunes 5 , 6 , 7 – 8 , 15 , 16 . Ongoing hydrogen loss from two sibling exoplanets provides support for the role of such hydrogen loss in the evolution of close-orbiting sub-Neptunes.

Beyond our Solar System, aurorae have been inferred from radio observations of isolated brown dwarfs 1 , 2 . Within our Solar System, giant planets have auroral emission with signatures across the electromagnetic spectrum including infrared emission of H 3 + and methane. Isolated brown dwarfs with auroral signatures in the radio have been searched for corresponding infrared features, but only null detections have been reported 3 . CWISEP J193518.59-154620.3. (W1935 for short) is an isolated brown dwarf with a temperature of approximately 482 K. Here we report James Webb Space Telescope observations of strong methane emission from W1935 at 3.326 μm. Atmospheric modelling leads us to conclude that a temperature inversion of approximately 300 K centred at 1–10 mbar replicates the feature. This represents an atmospheric temperature inversion for a Jupiter-like atmosphere without irradiation from a host star. A plausible explanation for the strong inversion is heating by auroral processes, although other internal and external dynamical processes cannot be ruled out. The best-fitting model rules out the contribution of H 3 + emission, which is prominent in Solar System gas giants. However, this is consistent with rapid destruction of H 3 + at the higher pressure where the W1935 emission originates 4 . Methane emission from a very cool brown dwarf, perhaps arising from an aurora, has been detected in James Webb Space Telescope observations.

PREMISE OF THE STUDY: Aphyllon is a clade of holoparasites that includes closely related North American and South American species parasitic on Grindelia. Both Aphyllon (Orobanchaceae) and Grindelia (Asteraceae) have amphitropical disjunctions between North America and South America; however, the timing of these patterns and the processes to explain them are unknown. METHODS: Chronograms for the Orobanchaceae and Grindelia and their relatives were constructed using fossil and secondary calibration points, one of which was based on the inferred timing of horizontal gene transfer from a papilionoid legume into the common ancestor of Orobanche and Phelipanche. Elevated rates of molecular evolution in the Orobanchaceae have hindered efforts to determine reliable divergence time estimates in the absence of a fossil record. However, using a horizontal gene transfer event as a secondary calibration overcomes this limitation. These chronograms were used to reconstruct the biogeography of Aphyllon, Grindelia, and relatives using a DEC+J model implemented in RevBayes. KEY RESULTS: Aphyllon had two amphitropical dispersals from North America to South America, while Grindelia had a single dispersal. The dispersal of the Aphyllon lineage that is parasitic on Grindelia (0.40 Ma) took place somewhat after Grindelia began to diversify in South America (0.93 Ma). Using a secondary calibration based on horizontal gene transfer, we infer more recent divergence dates of holoparasitic Orobancheae than previous studies. CONCLUSIONS: Parallel host–parasite amphitropical disjunctions in Grindelia and Aphyllon illustrate one means by which ecological specialization may result in nonindependent patterns of diversity in distantly related lineages. Although Grindelia and Aphyllon both dispersed to South America recently, Grindelia appears to have diversified more extensively following colonization. More broadly, recent Pleistocene glaciations probably have also contributed to patterns of diversity and biogeography of temperate northern hemisphere Orobancheae. We also demonstrate the utility of using horizontal gene transfer events from well‐dated clades to calibrate parasite phylogenies in the absence of a fossil record.

PREMISE OF THE STUDY: Hesperolinon (western flax; Linaceae) is endemic to the western United States, where it is notable for its high and geographically concentrated species diversity on serpentine-derived soils and for its use as a model system in disease ecology. We used a phylogenetic framework to test a long-standing hypothesis that Hesperolinon is a neoendemic radiation. METHODS: Five plastid and two ribosomal nuclear DNA gene regions were sampled from 105 populations of Hesperolinon, including all 13 recently recognized species across their known ranges. We used these data to generate population-level phylogenies of Hesperolinon. We also generated a robustly sampled chronogram of Linaceae using an eight-gene, 100-taxon supermatrix calibrated using fossil Linum pollen and a published chronogram of Malpighiales. KEY RESULTS: Most diversification in Hesperolinon has taken place in the past 1-2 million yr, much more recently than previous estimates. Only the earliestdiverging species, H. drymarioides, was resolved as a clade. Denser taxon and gene sampling generally support previously proposed relationships within Linaceae, but with more recent diversification of key clades. CONCLUSIONS: Hesperolinon is an excellent example of edaphic neoendemism, in support of Raven and Axelrod's hypothesis for the genus. Dense population-level sampling reveals a complex of incipient species, with clades poorly aligned with traditional morphological circumscriptions, likely due in part to continued gene flow. The diversification of Linaceae is more recent than previously estimated, and other recent radiations (e.g., Hugonia) warrant further study.

Aphyllon epigalium Colwell & A.C. Schneid. is described as a new species from Oregon and California. This taxon is distinguishable from the other members of Aphyllon Mitch. sect. Aphyllon in Western North America (i.e., A. fasciculatum [Nutt.] Torr. & A. Gray, A. purpureum [A. Heller] Holub, and A. uniflorum [L.] Torr. & A. Gray) in its host preference for Galium L., by having 2–4 yellow flowers per stem, and pedicels longer than the stem. Two subspecies are described: Aphyllon epigaliumsubsp.epigalium, which occurs in the Cascade and Klamath ranges in Oregon and California, and the Coast Ranges and Sierra Nevada in California; and A. epigaliumsubsp.notocalifornicum Colwell & A.C. Schneid., currently known from few sites in montane southern California. The new subspecies differ from one another in flower size, corolla lobe shape, host preference, geographic range, and nuclear and plastid genetic markers. An updated key to California and Oregon Aphyllon sect. Aphyllon is presented.