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The extent, duration, and seasonality of sea ice and glacial discharge strongly influence Antarctic marine ecosystems. Most organisms' life cycles in this region are attuned to ice seasonality. The annual retreat and melting of sea ice in the austral spring stratifies the upper ocean, triggering large phytoplankton blooms. The magnitude of the blooms is proportional to the winter extent of ice cover, which can act as a barrier to wind mixing. Antarctic krill, one of the most abundant metazoan populations on Earth, consume phytoplankton blooms dominated by large diatoms. Krill, in turn, support a large biomass of predators, including penguins, seals, and whales. Human activity has altered even these remote ecosystems. The western Antarctic Peninsula region has warmed by 7°C over the past 50 years, and sea ice duration has declined by almost 100 days since 1978, causing a decrease in phytoplankton productivity in the northern peninsula region. Besides climate change, Antarctic marine systems have been greatly altered by harvesting of the great whales and now krill. It is unclear to what extent the ecosystems we observe today differ from the pristine state.

Carbon export driven by submesoscale, eddy‐associated vertical velocities (“eddy subduction”), and particularly its seasonality, remains understudied, leaving a gap in our understanding of ocean carbon sequestration. Here, we assess mechanisms controlling eddy subduction's spatial and seasonal patterns using 15 years of observations from BGC‐Argo floats in the Southern Ocean. We identify signatures of eddy subduction as subsurface anomalies in temperature‐salinity and oxygen. The anomalies are spatially concentrated near weakly stratified areas and regions with strong lateral buoyancy gradients diagnosed from satellite altimetry, particularly in the Antarctic Circumpolar Current's standing meanders. We use bio‐optical ratios, specifically the chlorophyll a to particulate backscatter ratio (Chl/bbp) to find that eddy subduction is most active in the spring and early summer, with freshly exported material associated with seasonally weak vertical stratification and increasing surface biomass. Climate change is increasing ocean stratification globally, which may weaken eddy subduction's carbon export potential. Plain Language Summary Oceans play an important role in global climate by soaking up and sequestering atmospheric carbon dioxide. Photosynthetic activity at the surface turns carbon dioxide into organic carbon, and if this carbon leaves the surface to the deep ocean, it can be locked away from the atmosphere. One way this occurs is through the physical circulation associated with swirling eddies, which can rapidly transport organic carbon‐rich surface waters and “inject” them into deep waters. However, we still don't fully understand the seasonal timing of this process, or what drives its spatial distribution. We investigated this in the Southern Ocean, which is very important to global climate, using data collected by drifting robots. We find that this process is the most active in regions where eddies drive strong surface stirring, and during the spring, when weak stratification allows injections to penetrate deep into the ocean. Because this process is poorly represented in climate models, these findings will improve our understanding of how the ocean absorbs carbon. Key Points Eddy subduction in the Southern Ocean is observed as subsurface anomalies in spice and oxygen measured by autonomous profiling floats Spatial distribution is controlled by weak stratification and strong lateral buoyancy gradients, diagnosed using satellite altimetry Bio‐optical proxies suggest that eddy subduction is most active in spring/early summer, driven by weak vertical stratification

The mechanisms of coral calcification at the molecular, cellular and tissue levels are poorly understood. In this study, we examine calcium carbonate precipitation using novel coral tissue cultures that aggregate to form \"proto-polyps\". Our goal is to establish an experimental system in which calcification is facilitated at the cellular level, while simultaneously allowing in vitro manipulations of the calcifying fluid. This novel coral culturing technique enables us to study the mechanisms of biomineralization and their implications for geochemical proxies. Viable cell cultures of the hermatypic, zooxanthellate coral, Stylophora pistillata, have been maintained for 6 to 8 weeks. Using an enriched seawater medium with aragonite saturation state similar to open ocean surface waters (Ω(arag)~4), the primary cell cultures assemble into \"proto-polyps\" which form an extracellular organic matrix (ECM) and precipitate aragonite crystals. These extracellular aragonite crystals, about 10 µm in length, are formed on the external face of the proto-polyps and are identified by their distinctive elongated crystallography and X-ray diffraction pattern. The precipitation of aragonite is independent of photosynthesis by the zooxanthellae, and does not occur in control experiments lacking coral cells or when the coral cells are poisoned with sodium azide. Our results demonstrate that proto-polyps, aggregated from primary coral tissue culture, function (from a biomineralization perspective) similarly to whole corals. This approach provides a novel tool for investigating the biophysical mechanism of calcification in these organisms.

Rapid warming in the highly productive western Antarctic Peninsula (WAP) region of the Southern Ocean has affected multiple trophic levels, yet viral influences on microbial processes and ecosystem function remain understudied in the Southern Ocean. Here we use cultivation-independent quantitative ecological and metagenomic assays, combined with new comparative bioinformatic techniques, to investigate double-stranded DNA viruses during the WAP spring–summer transition. This study demonstrates that (i) temperate viruses dominate this region, switching from lysogeny to lytic replication as bacterial production increases, and (ii) Southern Ocean viral assemblages are genetically distinct from lower-latitude assemblages, primarily driven by this temperate viral dominance. This new information suggests fundamentally different virus–host interactions in polar environments, where intense seasonal changes in bacterial production select for temperate viruses because of increased fitness imparted by the ability to switch replication strategies in response to resource availability. Further, temperate viral dominance may provide mechanisms (for example, bacterial mortality resulting from prophage induction) that help explain observed temporal delays between, and lower ratios of, bacterial and primary production in polar versus lower-latitude marine ecosystems. Together these results suggest that temperate virus–host interactions are critical to predicting changes in microbial dynamics brought on by warming in polar marine systems.

The global ocean is an important sink for anthropogenic CO2 (ref. 1). Nearly half of the oceanic CO2 uptake occurs in the Southern Ocean2. Although the role of the Southern Ocean CO2 sink in the global carbon cycle is recognized, there are uncertainties regarding its contemporary trend3,4, with a need for improved mechanistic understanding, especially in productive Antarctic coastal regions experiencing substantial changes in temperature and sea ice5. Here, we demonstrate strong coupling between summer upper ocean stability, phytoplankton dynamics and oceanic CO2 uptake along the rapidly changing West Antarctic Peninsula using a 25-year dataset (1993–2017). Greater upper ocean stability drives enhanced biological production and biological dissolved inorganic carbon drawdown, resulting in greater oceanic CO2 uptake. Diatoms achieve higher biomass, oceanic CO2 uptake and uptake efficiency than other phytoplankton. Over the past 25 years, changes in sea ice dynamics have driven an increase in upper ocean stability, phytoplankton biomass and biological dissolved inorganic carbon drawdown, resulting in a nearly fivefold increase in summer oceanic CO2 uptake. We hypothesize that continued warming and declines in sea ice will lead to a decrease in biological dissolved inorganic carbon drawdown, negatively impacting summer oceanic CO2 uptake. These results from the West Antarctic Peninsula provide a framework to understand how oceanic CO2 uptake in other Antarctic coastal regions may be altered due to climate change.

Understanding the mechanisms by which climate variability affects multiple trophic levels in food webs is essential for determining ecosystem responses to climate change. Here we use over two decades of data collected by the Palmer Long Term Ecological Research program (PAL-LTER) to determine how large-scale climate and local physical forcing affect phytoplankton, zooplankton and an apex predator along the West Antarctic Peninsula (WAP). We show that positive anomalies in chlorophyll- a (chl- a ) at Palmer Station, occurring every 4–6 years, are constrained by physical processes in the preceding winter/spring and a negative phase of the Southern Annular Mode (SAM). Favorable conditions for phytoplankton included increased winter ice extent and duration, reduced spring/summer winds, and increased water column stability via enhanced salinity-driven density gradients. Years of positive chl- a anomalies are associated with the initiation of a robust krill cohort the following summer, which is evident in Adélie penguin diets, thus demonstrating tight trophic coupling. Projected climate change in this region may have a significant, negative impact on phytoplankton biomass, krill recruitment and upper trophic level predators in this coastal Antarctic ecosystem. The Western Antarctic Peninsular is subject to climate change, including increased winter temperatures and melting sea ice. In this study, the authors demonstrate that climate change in this area effects bacteria and phytoplankton levels, which culminates in an altered diet for the apex predator, the Adélie penguin.

The time scales on which river inflows disperse in the coastal ocean are relevant to a host of biogeochemical and environmental processes. These time scales are examined in a modeling study of the Hudson River plume on its entry to the New York Bight (NYB). Constituent-oriented age and residence-time theory is applied to compute two time scales: mean age, which is calculated from the ratio of two model tracers, and residence time, which is calculated using the adjoint of the tracer conservation equation. Spatial and temporal variability associated with river discharge and wind is investigated. High river discharge lowers surface water age and shortens residence time in the apex of the NYB. Easterly winds increase surface water age and extend the duration waters along the Long Island coast remain in the NYB apex. Southerly winds increase age along the New Jersey coast but drive a decrease in age of offshore surface waters and prolong the time that surface waters close to the New Jersey coast stay in the NYB apex. Residence time along the Long Island coast is high in spring and summer because of the retention of water north of the Hudson shelf valley. Patterns of modeled surface water age and an age proxy computed from the ratio of satellite-measured irradiance in two channels show qualitative agreement. A least squares fit gives a statistically significant empirical relationship between the band ratio and modeled mean age for NYB waters.

The West Antarctic Peninsula (WAP) has experienced significant change over the last 50 years. Using a 24 year spatial time series collected by the Palmer Long Term Ecological Research programme, we assessed long-term patterns in the sea ice, upper mixed layer depth (MLD) and phytoplankton productivity. The number of sea ice days steadily declined from the 1980s until a recent reversal that began in 2008. Results show regional differences between the northern and southern regions sampled during regional ship surveys conducted each austral summer. In the southern WAP, upper ocean MLD has shallowed by a factor of 2. Associated with the shallower mixed layer is enhanced phytoplankton carbon fixation. In the north, significant interannual variability resulted in the mixed layer showing no trended change over time and there was no significant increase in the phytoplankton productivity. Associated with the recent increases in sea ice there has been an increase in the photosynthetic efficiency (chlorophyll a-normalized carbon fixation) in the northern and southern regions of the WAP. We hypothesize the increase in sea ice results in increased micronutrient delivery to the continental shelf which in turn leads to enhanced photosynthetic performance. This article is part of the theme issue 'The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change'.

Since the middle of the past century, the Western Antarctic Peninsula has warmed rapidly with a significant loss of sea ice but the impacts on plankton biodiversity and carbon cycling remain an open question. Here, using a 5-year dataset of eukaryotic plankton DNA metabarcoding, we assess changes in biodiversity and net community production in this region. Our results show that sea-ice extent is a dominant factor influencing eukaryotic plankton community composition, biodiversity, and net community production. Species richness and evenness decline with an increase in sea surface temperature (SST). In regions with low SST and shallow mixed layers, the community was dominated by a diverse assemblage of diatoms and dinoflagellates. Conversely, less diverse plankton assemblages were observed in waters with higher SST and/or deep mixed layers when sea ice extent was lower. A genetic programming machine-learning model explained up to 80% of the net community production variability at the Western Antarctic Peninsula. Among the biological explanatory variables, the sea-ice environment associated plankton assemblage is the best predictor of net community production. We conclude that eukaryotic plankton diversity and carbon cycling at the Western Antarctic Peninsula are strongly linked to sea-ice conditions. Over the past century, the Western Antarctic Peninsula has experienced rapid warming and a substantial loss of sea ice with important implications for plankton biodiversity and carbon cycling. Using a 5-year DNA metabarcoding dataset, this study assesses how interannual variability in sea-ice conditions impacts biodiversity and biological carbon fluxes in this region.

Numerous taxonomic groups exhibit an evolutionary trajectory in cell or body size. The size structure of marine phytoplankton communities strongly affects food web structure and organic carbon export into the ocean interior, yet macroevolutionary patterns in the size structure of phytoplankton communities have not been previously investigated. We constructed a database of the size of the silica frustule of the dominant fossilized marine planktonic diatom species over the Cenozoic. We found that the minimum and maximum sizes of the diatom frustule have expanded in concert with increasing species diversity. In contrast, the mean area of the diatom frustule is highly correlated with oceanic temperature gradients inferred from the δ18O of foraminiferal calcite, consistent with the hypothesis that climatically induced changes in oceanic mixing have altered nutrient availability in the euphotic zone and driven macroevolutionary shifts in the size of marine pelagic diatoms through the Cenozoic.