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result(s) for
"Sebastian Aland"
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Biomolecular condensates mediate bending and scission of endosome membranes
2024
Multivesicular bodies are key endosomal compartments implicated in cellular quality control through their degradation of membrane-bound cargo proteins
1
–
3
. The ATP-consuming ESCRT protein machinery mediates the capture and engulfment of membrane-bound cargo proteins through invagination and scission of multivesicular-body membranes to form intraluminal vesicles
4
,
5
. Here we report that the plant ESCRT component FREE1
6
forms liquid-like condensates that associate with membranes to drive intraluminal vesicle formation. We use a minimal physical model, reconstitution experiments and in silico simulations to identify the dynamics of this process and describe intermediate morphologies of nascent intraluminal vesicles. Furthermore, we find that condensate-wetting-induced line tension forces and membrane asymmetries are sufficient to mediate scission of the membrane neck without the ESCRT protein machinery or ATP consumption. Genetic manipulation of the ESCRT pathway in several eukaryotes provides additional evidence for condensate-mediated membrane scission in vivo. We find that the interplay between condensate and machinery-mediated scission mechanisms is indispensable for osmotic stress tolerance in plants. We propose that condensate-mediated scission represents a previously undescribed scission mechanism that depends on the physicomolecular properties of the condensate and is involved in a range of trafficking processes. More generally, FREE1 condensate-mediated membrane scission in multivesicular-body biogenesis highlights the fundamental role of wetting in intracellular dynamics and organization.
Plant ESCRT component FREE1 forms liquid-like condensates that associate with membranes to drive intraluminal vesicle formation.
Journal Article
Is cell segregation like oil and water: Asymptotic versus transitory regime
2022
Understanding the segregation of cells is crucial to answer questions about tissue formation in embryos or tumor progression. Steinberg proposed that separation of cells can be compared to the separation of two liquids. Such a separation is well described by the Cahn-Hilliard (CH) equations and the segregation indices exhibit an algebraic decay with exponent 1/3 with respect to time. Similar exponents are also observed in cell-based models. However, the scaling behavior in these numerical models is usually only examined in the asymptotic regime and these models have not been directly applied to actual cell segregation data. In contrast, experimental data also reveals other scaling exponents and even slow logarithmic scaling laws. These discrepancies are commonly attributed to the effects of collective motion or velocity-dependent interactions. By calibrating a 2D cellular automaton (CA) model which efficiently implements a dynamic variant of the differential adhesion hypothesis to 2D experimental data from Méhes et al., we reproduce the biological cell segregation experiments with just adhesive forces. The segregation in the cellular automaton model follows a logarithmic scaling initially, which is in contrast to the proposed algebraic scaling with exponent 1/3. However, within the less than two orders of magnitudes in time which are observable in the experiments, a logarithmic scaling may appear as a pseudo-algebraic scaling. In particular, we demonstrate that the cellular automaton model can exhibit a range of exponents ≤1/3 for such a pseudo-algebraic scaling. Moreover, the time span of the experiment falls into the transitory regime of the cellular automaton rather than the asymptotic one. We additionally develop a method for the calibration of the 2D Cahn-Hilliard model and find a match with experimental data within the transitory regime of the Cahn-Hilliard model with exponent 1/4. On the one hand this demonstrates that the transitory behavior is relevant for the experiment rather than the asymptotic one. On the other hand this corroborates the ambiguity of the scaling behavior, when segregation processes can be only observed on short time spans.
Journal Article
Tunable nano-replication to explore the omniphobic characteristics of springtail skin
by
Aland, Sebastian
,
Neinhuis, Christoph
,
Werner, Carsten
in
631/61/54
,
639/301/357
,
Biomaterials
2013
Springtails (Collembola) are wingless arthropods adapted to cutaneous respiration in temporarily rain-flooded and microbially contaminated habitats by a non-wetting and antiadhesive skin surface that is mechanically rather stable. Recapitulating the robust and effectively repellent surface characteristics of springtail skin in engineered materials may offer exciting opportunities for demanding applications, but it requires a detailed understanding of the underlying design principles. Towards this aim and based on our recent analysis of the structural features of springtail skin, we developed a tunable polymer replication process to dissect the contributions of different structural elements and surface chemistry to the omniphobic performance of the cuticle. The Cassie–Wenzel transition at elevated pressures was explored by
in situ
plastron collapse experiments and by numerical FEM simulations. The results obtained unravel the decisive role of nanoscopic cuticle structures for the protection of springtails against wetting, and explain how the evolved nanotopography enables the production of omniphobic surfaces even from intrinsically hydrophilic polymer materials.
Surface patterning: Mimicking springtail skin
The wetting behavior of a material's surface is a property of fundamental interest to material scientists. Springtails, also known as collembola, are soil-dwelling arthropods that typically respire through their skin. To avoid suffocating in wet conditions, springtails have evolved a complex, hierarchically nanostructured skin surface that repels water with remarkable efficiency. Carsten Werner at the Leibniz Institute of Polymer Research Dresden, Germany, and his colleagues have carried out numerical simulations and made accurate polymer-based replicas of this skin surface in order to understand better its anti-wetting behavior. Their results show that tiny overhangs in the nanostructure help to trap air against the surface in the wet, providing an effective barrier against wetting. The researchers further showed that even intrinsically hydrophilic materials will repel water when structured in this way. An improved understanding of springtail skin behaviour provides valuable insights that will aid scientists to design engineered materials with improved anti-wetting properties.
Springtails, wingless arthropods, are adapted to cutaneous respiration in temporarily rain-flooded habitats by a hierarchically structured skin surface. A tunable polymer replication process was applied to dissect the contributions of different structural elements and surface chemistry to the omniphobic performance of the skin.
Journal Article
A Simple Parallel Solution Method for the Navier–Stokes Cahn–Hilliard Equations
by
Adam, Nadja
,
Aland, Sebastian
,
Franke, Florian
in
Cahn–Hilliard
,
diffuse interface
,
Navier–Stokes
2020
We present a discretization method of the Navier–Stokes Cahn–Hilliard equations which offers an impressing simplicity, making it easy to implement a scalable parallel code from scratch. The method is based on a special pressure projection scheme with incomplete pressure iterations. The resulting scheme admits solution by an explicit Euler method. Hence, all unknowns decouple, which enables a very simple implementation. This goes along with the opportunity of a straightforward parallelization, for example, by few lines of Open Multi-Processing (OpenMP) or Message Passing Interface (MPI) routines. Using a standard benchmark case of a rising bubble, we show that the method provides accurate results and good parallel scalability.
Journal Article
Adaptive Micromixer Based on the Solutocapillary Marangoni Effect in a Continuous-Flow Microreactor
by
Schwarzenberger, Karin
,
Eckert, Kerstin
,
Mokbel, Marcel
in
Air bubbles
,
Alcohol
,
Blood vessels
2018
Continuous-flow microreactors are an important development in chemical engineering technology, since pharmaceutical production needs flexibility in reconfiguring the synthesis system rather than large volumes of product yield. Microreactors of this type have a special vessel, in which the convective vortices are organized to mix the reagents to increase the product output. We propose a new type of micromixer based on the intensive relaxation oscillations induced by a fundamental effect discovered recently. The mechanism of these oscillations was found to be a coupling of the solutal Marangoni effect, buoyancy and diffusion. The phenomenon can be observed in the vicinity of an air–liquid (or liquid–liquid) interface with inhomogeneous concentration of a surface-active solute. Important features of the oscillations are demonstrated experimentally and numerically. The periodicity of the oscillations is a result of the repeated regeneration of the Marangoni driving force. This feature is used in our design of a micromixer with a single air bubble inside the reaction zone. We show that the micromixer does not consume external energy and adapts to the medium state due to feedback. It switches on automatically each time when a concentration inhomogeneity in the reaction zone occurs, and stops mixing when the solution becomes sufficiently uniform.
Journal Article
Coated microbubbles swim via shell buckling
by
Quilliet, Catherine
,
Versluis, Michel
,
van Elburg, Benjamin
in
639/166/985
,
692/700/565/1436/152
,
Biocompatibility
2023
Engineered microswimmers show great promise in various biomedical applications. However, their application is hindered by the slow mobility, limited maneuverability and poor biocompatibility. Lipid coated microbubbles have high compressibility and are already approved for clinical use as diagnostic ultrasound contrast agents. Here we experimentally investigate the swimming motion of these microbubbles under external cyclic overpressure. A net displacement was generated via reproducible and non-destructive cycles of deflation and re-inflation of the microbubble. We also propose a numerical model which allows a maximum swimming speed on the order of meters per second, which falls in the range of blood flow velocity in large vessels. Unlike the acoustic radiation force technique, where the displacement is always directed along the axis of ultrasound propagation, here, the direction of propulsion is controlled in the shell reference frame. This provides a solution toward controlled steering for ultrasound molecular imaging and drug delivery.
Microbubbles show great promise in clinical application as diagnostic ultrasound contrast agents. Chabouh and coworkers characterize the swimming motion of these microbubbles under cyclic external pressures through buckling. The results provide guidance to design ultrasound contrast agents with accurate mobility control.
Journal Article
Margination of white blood cells: a computational approach by a hydrodynamic phase field model
by
Aland, Sebastian
,
Voigt, Axel
,
Marth, Wieland
in
Cardiovascular system
,
Cellular biology
,
Fluid mechanics
2016
We numerically investigate margination of white blood cells and demonstrate the dependency on a number of conditions including haematocrit, the deformability of the cells and the Reynolds number. The approach, which is based on a mesoscopic hydrodynamic Helfrich-type model, reproduces previous results, e.g. a decreasing tendency for margination with increasing deformability and a non-monotonic dependency on haematocrit. The consideration of inertia effects, which may be of relevance in various parts of the cardiovascular system, indicates a decreasing tendency for margination with increasing Reynolds number. The effect is discussed by analysing inertial and non-inertial lift forces for single cells under different flow conditions and large-scale two-dimensional simulations of interacting red blood cells and white blood cells in an idealized blood vessel.
Journal Article
Post-buckling dynamics of spherical shells
by
Aland, Sebastian
,
Quilliet, Catherine
,
Coupier, Gwennou
in
Acoustics
,
Buckling
,
Condensed Matter
2021
We explore the intrinsic dynamics of spherical shells immersed in a fluid in the vicinity of their buckled state, through experiments and three-dimensional axisymmetric simulations. The results are supported by a theoretical model that accurately describes the buckled shell as a two-variable-only oscillator. We quantify the effective ‘softening’ of shells above the buckling threshold, as observed in recent experiments on interactions between encapsulated microbubbles and acoustic waves. The main dissipation mechanism in the neighbouring fluid is also evidenced.
Journal Article
Post-buckling dynamics of spherical shells
2021
We explore the intrinsic dynamics of spherical shells immersed in a fluid in the vicinity of their buckled state, through experiments and three-dimensional axisymmetric simulations. The results are supported by a theoretical model that accurately describes the buckled shell as a two-variable-only oscillator. We quantify the effective ‘softening’ of shells above the buckling threshold, as observed in recent experiments on interactions between encapsulated microbubbles and acoustic waves. The main dissipation mechanism in the neighbouring fluid is also evidenced.
Journal Article
Exact Price of Anarchy for Polynomial Congestion Games
by
Gairing, Martin
,
Aland, Sebastian
,
Monien, Burkhard
in
Applied sciences
,
Computer science
,
Computer science; control theory; systems
2011
We show exact values for the worst-case price of anarchy in weighted and unweighted (atomic unsplittable) congestion games, provided that all cost functions are bounded-degree polynomials with nonnegative coefficients. The given values also hold for weighted and unweighted network congestion games.
Journal Article