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58 result(s) for "Shah, Sakshi"
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Impact of cognitive tasks on postural stability in young and older adults
Background Postural stability requires coordination of the visual, somatosensory, and vestibular systems. Cognitive tasks can divert attention from maintaining posture, potentially reducing body sway and fall risk. The effect on postural stability increases with cognitive load complexity. Understanding these aspects is crucial for studying the relationship between cognitive functions and postural stability, especially in older adults who may face declines in both areas. Method The study involved 70 participants, divided into 2 groups: group I consisted of 35 young adults, and group II included 35 older adults. Each participant underwent a hearing test using pure-tone audiometry and was screened for vestibular and cognitive function. Postural stability was assessed using a stabilometer, with evaluations conducted under various conditions, both with and without cognitive tasks. The cognitive tasks utilized included word generation, backward letter repetition, and backward serial 7 subtraction. Results Compared to noncognitive tasks, postural stability improved with cognitive tasks for both groups. When compared across different cognitive tasks, the backward letter repetition task enhanced postural stability more than word generation and backward serial 7 subtraction task. The most significant differences were observed on a cushioned surface with eyes closed when comparing noncognitive to cognitive tasks and across different cognitive tasks in both groups. However, younger adults exhibited better postural stability with cognitive tasks than older adults. Conclusion Postural stability was enhanced with cognitive tasks compared to noncognitive tasks for both young and older adults.
Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors
Cooperativity and antagonism between transcription factors (TFs) can drastically modify their binding to regulatory DNA elements. While mapping these relationships between TFs is important for understanding their context-specific functions, existing approaches either rely on DNA binding motif predictions, interrogate one TF at a time, or study individual TFs in parallel. Here, we introduce paired yeast one-hybrid (pY1H) assays to detect cooperativity and antagonism across hundreds of TF-pairs at DNA regions of interest. We provide evidence that a wide variety of TFs are subject to modulation by other TFs in a DNA region-specific manner. We also demonstrate that TF-TF relationships are often affected by alternative isoform usage and identify cooperativity and antagonism between human TFs and viral proteins from human papillomaviruses, Epstein-Barr virus, and other viruses. Altogether, pY1H assays provide a broadly applicable framework to study how different functional relationships affect protein occupancy at regulatory DNA regions. Combinations of transcription factors (TFs) bind DNA to fine-tune gene expression. Here, the authors map cooperative and antagonistic DNA binding across hundreds of TF-pairs. TF-TF relationships vary depending on DNA targets and TF isoforms.
Molar Uprighting Using Segmental Wiring Technique (M.U.S.T.): A Case Report
A tipped molar is a relatively common condition that can compromise oral health by increasing the risk of periodontal defects, complicating prosthetic restoration, and creating unfavorable occlusal forces. This case report presents a practical clinical approach for molar uprighting using the Molar Uprighting Using Segmental Wiring Technique (M.U.S.T.) in a 12-year-old female patient. In this case, a mesially tipped second molar (tooth 37) impeded the placement of a stainless steel crown (SSC) on tooth 36 following root canal treatment. The technique involves using double buccal tubes bonded to the molars and flexible archwires, allowing for effective uprighting of posterior teeth with minimal intervention and without complex loop designs or technique-sensitive procedures. Compared to traditional full-fixed appliances, M.U.S.T. offers improved patient comfort and facilitates easier oral hygiene maintenance.
A large-scale cancer-specific protein–DNA interaction network
Cancer development and progression are generally associated with gene dysregulation, often resulting from changes in the transcription factor (TF) sequence or expression. Identifying key TFs involved in cancer gene regulation provides a framework for potential new therapeutics. This study presents a large-scale cancer gene TF-DNA interaction network, as well as an extensive promoter clone resource for future studies. Highly connected TFs bind to promoters of genes associated with either good or poor cancer prognosis, suggesting that strategies aimed at shifting gene expression balance between these two prognostic groups may be inherently complex. However, we identified potential for oncogene-targeted therapeutics, with half of the tested oncogenes being potentially repressed by influencing specific activators or bifunctional TFs. Finally, we investigate the role of intrinsically disordered regions within the key cancer-related TF ESR1 in DNA binding and transcriptional activity, and found that these regions can have complex trade-offs in TF function. Altogether, our study broadens our knowledge of the TFs involved in cancer gene regulation and provides a valuable resource for future studies and therapeutics.
HIV silencing and cell survival signatures in infected T cell reservoirs
Rare CD4 T cells that contain HIV under antiretroviral therapy represent an important barrier to HIV cure 1 – 3 , but the infeasibility of isolating and characterizing these cells in their natural state has led to uncertainty about whether they possess distinctive attributes that HIV cure-directed therapies might exploit. Here we address this challenge using a microfluidic technology that isolates the transcriptomes of HIV-infected cells based solely on the detection of HIV DNA. HIV-DNA + memory CD4 T cells in the blood from people receiving antiretroviral therapy showed inhibition of six transcriptomic pathways, including death receptor signalling, necroptosis signalling and antiproliferative Gα12/13 signalling. Moreover, two groups of genes identified by network co-expression analysis were significantly associated with HIV-DNA + cells. These genes ( n  = 145) accounted for just 0.81% of the measured transcriptome and included negative regulators of HIV transcription that were higher in HIV-DNA + cells, positive regulators of HIV transcription that were lower in HIV-DNA + cells, and other genes involved in RNA processing, negative regulation of mRNA translation, and regulation of cell state and fate. These findings reveal that HIV-infected memory CD4 T cells under antiretroviral therapy are a distinctive population with host gene expression patterns that favour HIV silencing, cell survival and cell proliferation, with important implications for the development of HIV cure strategies. HIV-infected memory CD4 T cells under antiretroviral therapy are a distinctive population of cells with transcriptomic patterns that favour HIV silencing, cell survival and cell proliferation.
Performance prediction of different BCC lattice structures under static loading: an experimental approach
Modern-era researchers are interested in searching for new durable and sustainable materials. Cellular structures are the novel solution which exhibits high strength. Micro lattice structures are systematically arranged structures with a high strength-to-weight ratio. Micro lattice structures can be utilized widely as thermal insulators, energy, and vibration absorber in aircraft and automobile sectors. This study compares the mechanical characteristics of various BCC topologies that are frequently used today. Seven different types of cellular structures with different topologies viz. BCC, BCC enhanced, and BCCz, along with varied unit cell sizes and variations in strut diameter, were fabricated using SLS method. The primary cube was prepared as BCC (body-cubic centered), BCC enhanced, BCCz type with 2 × 2 × 2 mm sizes. The SS316 metal was used for these initial cells because to its superior corrosion resistance and improved mechanical performance. These primary cells were repeatedly constructed with patterns in the three X , Y , and Z axes, resulting in total sample sizes of 20 × 20 × 20 mm. FE analysis was performed using an FEA solver, and results were compared with experimental results. The result shows that BCCz exhibits superior mechanical properties, whereas BCC enhanced has more strength than regular BCC topology. The BCCZ showed a 62% rise in stress-carrying capacity compared to traditional lattice structure, whereas BCC enhanced showed the 22% rise in stress-carrying capacity. The consequence of size of unit cell is inspected for the outcome of lattices. The smaller unit cell lattice shows more significant yield stress for traditional BCC and enhanced BCC structure. Such a study can undoubtedly open doors for further research on the change in various topologies on the mechanical attributes of lattices under different loading conditions.
Mapping the Binding of Protein Heterodimers Containing Human Transcription Factors and Viral Transcription Regulators to Promoters of Immune Response Genes and Cancer Genes
Viruses are infectious disease- and cancer-causing agents. Viral infection in humans leads to a variety of cytopathic effects. Viral transcription regulators (vTRs) play a central role in human biological processes by modulating host gene expression through direct and indirect methods of binding to nucleic acids making it important to study. Despite the important role of vTRs in human disease, our understanding of their molecular features and functions remains limited. The focus of this study looks at vTR and human transcription factor (hTF) pairs to determine how vTRs affect the binding of hTFs to cytokine and cancer gene promoters. In this study we are conducting a pY1H screen using 139 vTR-hTF pairs, 83 cancer promoters, and 41 cytokine promoters. A total of 108 interactions were seen with results highlighting information about viral genome, family, and species. Overall, this study has offered a revolutionary method to study hTFs and vTRs as pairs in a variety of immune and cancer gene promoters to understand more about mechanisms of host gene regulation.
How Responses to Positive Affect Predict Subjective Well-being and Motivational Persistence
Previous research on depressive rumination has shown its association with undesirable outcomes and mental disorders. However, much less is known about responses to positive affect, especially outside the clinical population. Researchers of the present study identified positive rumination and dampening as two affect regulation strategies, where the former was distinguished into self-focused rumination and emotion-focused rumination. It was expected that positive rumination would positively predict subjective well-being and motivational persistence whereas dampening would be negatively related to the two variables. Data were collected through online self-report measures (n=345). Results indicate that a significant positive correlation exists between positive rumination and subjective well-being, while dampening is negatively related to it. Motivational persistence is found to be positively predicted by positive rumination. Implications and suggestions for future research are discussed.
The Immunophenotype and Proviral Landscape of HIV-infected CD4 T Cells During Antiretroviral Therapy
In individuals on effective antiretroviral therapy, integrated HIV proviruses persist within CD4 T cells, forming a viral reservoir that rebounds if treatment is stopped. Identifying and targeting these rare, infected cells is critical for advancing therapies, but methods to study reservoir cells are limited and their unique properties remain largely unknown. We applied DAb-seq, a high-throughput method that combines single-cell DNA and surface protein sequencing, to profile over five hundred and twenty thousand CD4 T cells from the blood of six individuals on ART. Infected cells were unequally distributed in T cell subsets, and differential protein expression between infected and uninfected cells revealed significant heterogeneity across cell subsets. Attempts to identify surface markers that differentiate infected from uninfected cells found antigens that mirrored the enrichment of HIV in central memory subsets. However, while central memory T cells harbored the majority of HIV, cells with intact provirus were enriched relative to their defective counterparts in Naïve and Regulatory T cell subsets, suggesting that they differentially maintain intact proviruses. In summary, we developed DAb-seq as an open-source platform for linking the proviral landscape to diverse cellular phenotypes, revealing heterogeneity in surface protein expression and provirus maintenance across infected subsets.
A large-scale cancer-specific protein-DNA interaction network
Cancer development and progression are generally associated with dysregulation of gene expression, often resulting from changes in transcription factor (TF) sequence or expression. Identifying key TFs involved in cancer gene regulation provides a framework for potential new therapeutics. This study presents a large-scale cancer gene TF-DNA interaction network as well as an extensive promoter clone resource for future studies. Most highly connected TFs do not show a preference for binding to promoters of genes associated with either good or poor cancer prognosis, suggesting that emerging strategies aimed at shifting gene expression balance between these two prognostic groups may be inherently complex. However, we identified potential for oncogene targeted therapeutics, with half of the tested oncogenes being potentially repressed by influencing specific activator or bifunctional TFs. Finally, we investigate the role of intrinsically disordered regions within the key cancer-related TF estrogen receptor ɑ (ESR1) on DNA binding and transcriptional activity, and found that these regions can have complex trade-offs in TF function. Altogether, our study not only broadens our knowledge of TFs involved in the cancer gene regulatory network but also provides a valuable resource for future studies, laying a foundation for potential therapeutic strategies targeting TFs in cancer.