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result(s) for
"Shin, Miyoung"
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Learning Explainable Time-Morphology Patterns for Automatic Arrhythmia Classification from Short Single-Lead ECGs
by
Shin, Miyoung
,
Lee, Hyeonjeong
in
arrhythmia classification
,
atrial fibrillation (AF)
,
convolutional neural network (CNN)
2021
Automatic detection of abnormal heart rhythms, including atrial fibrillation (AF), using signals obtained from a single-lead wearable electrocardiogram (ECG) device, is useful for daily cardiac health monitoring. In this study, we propose a novel image-based deep learning framework to classify single-lead ECG recordings of short variable length into several different rhythms associated with arrhythmias. By transforming variable-length 1D ECG signals into fixed-size 2D time-morphology representations and feeding them to the beat–interval–texture convolutional neural network (BIT-CNN) model, we aimed to learn the comprehensible characteristics of beat shape and inter-beat patterns over time for arrhythmia classification. The proposed approach allows feature embedding vectors to provide interpretable time-morphology patterns focused at each step of the learning process. In addition, this method reduces the number of model parameters needed to be trained and aids visual interpretation, while maintaining similar performance to other CNN-based approaches to arrhythmia classification. For experiments, we used the PhysioNet/CinC Challenge 2017 dataset and achieved an overall F1_NAO of 81.75% and F1_NAOP of 76.87%, which are comparable to those of the state-of-the-art methods for variable-length ECGs.
Journal Article
Cross-Database Learning Framework for Electrocardiogram Arrhythmia Classification Using Two-Dimensional Beat-Score-Map Representation
2025
Cross-database electrocardiogram (ECG) classification remains a critical challenge due to variations in patient populations, recording conditions, and annotation granularity. Existing methodologies for ECG arrhythmia classification have primarily utilized datasets with either fine-grained or coarse-grained labels, but seldom both simultaneously. Fine-grained labels provide beat-level annotations, whereas coarse-grained labels offer only record-level labels. In this study, we propose an innovative cross-database learning framework that utilizes both fine-grained and coarse-grained labels in tandem, thereby enhancing classification performance across heterogeneous datasets. Specifically, our approach begins with the pretraining of a CNN-based beat classifier that takes ECG signals as the input and predicts beat types on a finely labeled dataset, namely the MIT-BIH Arrhythmia Database (MITDB). The pretrained model is then fine-tuned using weakly supervised learning on two coarsely labeled datasets: the SPH one, which contains four rhythm classes, and the PTB-XL one, which involves binary classification between the sinus rhythm (SR) and atrial fibrillation (AFIB). Once the beat classifier is adapted to a new dataset, it generates a two-dimensional beat-score-map (BSM) representation from the input ECG signal. This 2D BSM is subsequently utilized as the input for arrhythmia rhythm classification. The proposed method achieves F1 scores of 0.9301 on the SPH dataset and 0.9267 on the PTB-XL dataset, corresponding to the multi-class and binary rhythm classification tasks described above. These results demonstrate a robust cross-database classification of complex cardiac arrhythmia rhythms. Furthermore, t-SNE visualizations of the 2D BSM representations, after adaptation to the coarsely labeled SPH and PTB-XL datasets, validate how our method significantly enhances the ability to differentiate between various arrhythmia rhythm types, thus highlighting its effectiveness in cross-database ECG analysis.
Journal Article
Driving Stress Detection Using Multimodal Convolutional Neural Networks with Nonlinear Representation of Short-Term Physiological Signals
by
Shin, Miyoung
,
Lee, Jaewon
,
Lee, Hyeonjeong
in
Accidents, Traffic
,
Automobile drivers
,
Automobile Driving
2021
Mental stress can lead to traffic accidents by reducing a driver’s concentration or increasing fatigue while driving. In recent years, demand for methods to detect drivers’ stress in advance to prevent dangerous situations increased. Thus, we propose a novel method for detecting driving stress using nonlinear representations of short-term (30 s or less) physiological signals for multimodal convolutional neural networks (CNNs). Specifically, from hand/foot galvanic skin response (HGSR, FGSR) and heart rate (HR) short-term input signals, first, we generate corresponding two-dimensional nonlinear representations called continuous recurrence plots (Cont-RPs). Second, from the Cont-RPs, we use multimodal CNNs to automatically extract FGSR, HGSR, and HR signal representative features that can effectively differentiate between stressed and relaxed states. Lastly, we concatenate the three extracted features into one integrated representation vector, which we feed to a fully connected layer to perform classification. For the evaluation, we use a public stress dataset collected from actual driving environments. Experimental results show that the proposed method demonstrates superior performance for 30-s signals, with an overall accuracy of 95.67%, an approximately 2.5–3% improvement compared with that of previous works. Additionally, for 10-s signals, the proposed method achieves 92.33% classification accuracy, which is similar to or better than the performance of other methods using long-term signals (over 100 s).
Journal Article
Using Wearable ECG/PPG Sensors for Driver Drowsiness Detection Based on Distinguishable Pattern of Recurrence Plots
by
Shin, Miyoung
,
Lee, Jaewon
,
Lee, Hyeonjeong
in
Artificial neural networks
,
Classification
,
Datasets
2019
This paper aims to investigate the robust and distinguishable pattern of heart rate variability (HRV) signals, acquired from wearable electrocardiogram (ECG) or photoplethysmogram (PPG) sensors, for driver drowsiness detection. As wearable sensors are so vulnerable to slight movement, they often produce more noise in signals. Thus, from noisy HRV signals, we need to find good traits that differentiate well between drowsy and awake states. To this end, we explored three types of recurrence plots (RPs) generated from the R–R intervals (RRIs) of heartbeats: Bin-RP, Cont-RP, and ReLU-RP. Here Bin-RP is a binary recurrence plot, Cont-RP is a continuous recurrence plot, and ReLU-RP is a thresholded recurrence plot obtained by filtering Cont-RP with a modified rectified linear unit (ReLU) function. By utilizing each of these RPs as input features to a convolutional neural network (CNN), we examined their usefulness for drowsy/awake classification. For experiments, we collected RRIs at drowsy and awake conditions with an ECG sensor of the Polar H7 strap and a PPG sensor of the Microsoft (MS) band 2 in a virtual driving environment. The results showed that ReLU-RP is the most distinct and reliable pattern for drowsiness detection, regardless of sensor types (i.e., ECG or PPG). In particular, the ReLU-RP based CNN models showed their superiority to other conventional models, providing approximately 6–17% better accuracy for ECG and 4–14% for PPG in drowsy/awake classification.
Journal Article
Overview of Solid Lipid Nanoparticles in Breast Cancer Therapy
2023
Lipid nanoparticles (LNPs), composed of ionized lipids, helper lipids, and cholesterol, provide general therapeutic effects by facilitating intracellular transport and avoiding endosomal compartments. LNP-based drug delivery has great potential for the development of novel gene therapies and effective vaccines. Solid lipid nanoparticles (SLNs) are derived from physiologically acceptable lipid components and remain robust at body temperature, thereby providing high structural stability and biocompatibility. By enhancing drug delivery through blood vessels, SLNs have been used to improve the efficacy of cancer treatments. Breast cancer, the most common malignancy in women, has a declining mortality rate but remains incurable. Recently, as an anticancer drug delivery system, SLNs have been widely used in breast cancer, improving the therapeutic efficacy of drugs. In this review, we discuss the latest advances of SLNs for breast cancer treatment and their potential in clinical use.
Journal Article
A Knowledge Graph Embedding Approach for Polypharmacy Side Effects Prediction
2023
Predicting the side effects caused by drug combinations may facilitate the prescription of multiple medications in a clinical setting. So far, several prediction models of multidrug side effects based on knowledge graphs have been developed, showing good performance under constrained test conditions. However, these models usually focus on relationships between neighboring nodes of constituent drugs rather than whole nodes, and do not fully exploit the information about the occurrence of single drug side effects. The lack of learning the information on such relationships and single drug data may hinder improvement of performance. Moreover, compared with all possible drug combinations, the highly limited range of drug combinations used for model training prevents achieving high generalizability. To handle these problems, we propose a unified embedding-based prediction model using knowledge graph constructed with data of drug–protein and protein–protein interactions. Herein, single or multiple drugs or proteins are mapped into the same embedding space, allowing us to (1) jointly utilize side effect occurrence data associated with single drugs and multidrug combinations to train prediction models and (2) quantify connectivity strengths between drugs and other entities such as proteins. Due to these characteristics, it becomes also possible to utilize the quantified relationships between distant nodes, as well as neighboring nodes, of all possible multidrug combinations to regularize the models. Compared with existing methods, our model showed improved performance, especially in predicting the side effects of new combinations containing novel drugs that have no clinical information on polypharmacy effects. Furthermore, our unified embedding vectors have been shown to provide interpretability, albeit to a limited extent, for proteins highly associated with multidrug side effect.
Journal Article
Method for Solving Difficulties in Rhythm Classification Caused by Few Samples and Similar Characteristics in Electrocardiograms
2023
A method for accurately analyzing electrocardiograms (ECGs), which are obtained from electrical signals generated by cardiac activity, is essential in heart disease diagnosis. However, rhythms are typically obtained with relatively few data samples and similar characteristics, making them difficult to classify. To solve these issues, we proposed a novel method that distinguishes a given ECG rhythm using a beat score map (BSM) image. Through the proposed method, the associations between beats and previously used features, such as the R–R interval, were considered. Rhythm classification was implemented by training a convolutional neural network model and using transfer learning with the created BSM image. As a result, the proposed method for ECG rhythms with small data samples showed significant results. It also showed good performance in differentiating atrial fibrillation (AFIB) and atrial flutter (AFL) rhythms, which are difficult to distinguish due to their similar characteristics. The performance for rhythms with a small number of samples of the proposed method is 20% better than an existing method. In addition, the performance based on the F-1 score for classifying AFIB and AFL of the proposed method is 30% better than the existing method. This study solved the previous limitations caused by small sample numbers and similar rhythms.
Journal Article
Enhancing Inter-Patient Performance for Arrhythmia Classification with Adversarial Learning Using Beat-Score Maps
2024
Research on computer-aided arrhythmia classification is actively conducted, but the limited generalization capacity constrains its applicability in practical clinical settings. One of the primary challenges in deploying such techniques in real-world scenarios is the inter-patient variability and the consequent performance degradation. In this study, we leverage our previous innovation, the n-beat-score map (n-BSM), to introduce an adversarial framework to mitigate the issue of poor performance in arrhythmia classification within the inter-patient paradigm. The n-BSM is a 2D representation of the ECG signal, capturing its constituent beat characteristics through beat-score vectors derived from a pre-trained beat classifier. We employ adversarial learning to eliminate patient-dependent features during the training of the beat classifier, thereby generating the patient-independent n-BSM (PI-BSM). This approach enables us to concentrate primarily on the learning characteristics associated with beat type rather than patient-specific features. Through a beat classifier pre-trained with adversarial learning, a series of beat-score vectors are generated for the beat segments that make up a given ECG signal. These vectors are then concatenated chronologically to form a PI-BSM. Utilizing PI-BSMs as the input, an arrhythmia classifier is trained to differentiate between distinct types of rhythms. This approach yields a 14.27% enhancement in the F1-score in the MIT-BIH arrhythmia database and a 4.97% improvement in cross-database evaluation using the Chapman–Shaoxing 12-lead ECG database.
Journal Article
p27 transcriptionally coregulates cJun to drive programs of tumor progression
by
Zhao, Dekuang
,
Wander, Seth A.
,
Jang, Kibeom
in
1-Phosphatidylinositol 3-kinase
,
Binding
,
Biological Sciences
2019
p27 shifts from CDK inhibitor to oncogene when phosphorylated by PI3K effector kinases. Here, we show that p27 is a cJun coregulator, whose assembly and chromatin association is governed by p27 phosphorylation. In breast and bladder cancer cells with high p27pT157pT198 or expressing a CDK-binding defective p27pT157pT198 phosphomimetic (p27CK−DD), cJun is activated and interacts with p27, and p27/cJun complexes localize to the nucleus. p27/cJun up-regulates TGFB2 to drive metastasis in vivo. Global analysis of p27 and cJun chromatin binding and gene expression shows that cJun recruitment to many target genes is p27 dependent, increased by p27 phosphorylation, and activates programs of epithelial–mesenchymal transformation and metastasis. Finally, human breast cancers with high p27pT157 differentially express p27/cJun-regulated genes of prognostic relevance, supporting the biological significance of the work.
Journal Article
C-terminally phosphorylated p27 activates self-renewal driver genes to program cancer stem cell expansion, mammary hyperplasia and cancer
2024
In many cancers, a stem-like cell subpopulation mediates tumor initiation, dissemination and drug resistance. Here, we report that cancer stem cell (CSC) abundance is transcriptionally regulated by C-terminally phosphorylated p27 (p27pT157pT198). Mechanistically, this arises through p27 co-recruitment with STAT3/CBP to gene regulators of CSC self-renewal including
MYC
, the Notch ligand
JAG1
, and
ANGPTL4
. p27pTpT/STAT3 also recruits a SIN3A/HDAC1 complex to co-repress the Pyk2 inhibitor,
PTPN12
. Pyk2, in turn, activates STAT3, creating a feed-forward loop increasing stem-like properties in vitro and tumor-initiating stem cells in vivo. The p27-activated gene profile is over-represented in STAT3 activated human breast cancers. Furthermore, mammary transgenic expression of phosphomimetic, cyclin-CDK-binding defective p27 (p27CK-DD) increases mammary duct branching morphogenesis, yielding hyperplasia and microinvasive cancers that can metastasize to liver, further supporting a role for p27pTpT in CSC expansion. Thus, p27pTpT interacts with STAT3, driving transcriptional programs governing stem cell expansion or maintenance in normal and cancer tissues.
Cancer stem cells (CSCs) have important roles in tumour initiation, metastasis and treatment resistance. Here, the authors show that C-terminally phosphorylated p27, together with STAT3, mediates the transcriptional regulation of CSC expansion, increasing cancer formation and metastasis in preclinical breast cancer models.
Journal Article