Catalogue Search | MBRL
Are you sure you want to remove the book from the shelf?
{{itemTitle}}
1,652
result(s) for
"Sims, C. A."
Sort by:
Cleaning up the biogeography of Labroides dimidiatus using phylogenetics and morphometrics
Cleaner fishes are some of the most conspicuous organisms on coral reefs due to their behaviour and prominent body pattern, consisting of a lateral stripe and blue/yellow colouration. All obligate cleaner fishes share this body stripe pattern, which is an important signal for attracting client fishes. However, variability in the cleaning signal of the cleaner fish
Labroides dimidiatus
has been documented across its range. Here, we investigate the geographic distribution of cleaner signal polymorphisms in
L. dimidiatus
and contrast this to phylogeographic variation in mitochondrial (mt) DNA. We used samples from 12 sites for genetic analyses, encompassing much of
L. dimidiatus’
range from the Red Sea to Fiji. We obtained morphometric measures of the cleaner signal body stripe width from individuals among six of the sites and qualitatively grouped tail stripe shape. mtDNA control region sequences were used for phylogenetic and population genetic analyses. We found that body stripe width was significantly correlated with tail stripe shape and geographical location, with Indian Ocean populations differing in morphology from western Pacific populations.
L. dimidiatus
haplotypes formed two reciprocally monophyletic clades, although in contrast to morphology, Japanese cleaner fish fell within the same clade as Indian Ocean cleaner fish and both clade types were sympatric in Papua New Guinea. An additional novel finding of our research was that the inclusion of two closely related cleaner fish species,
Labroides pectoralis
and
Labroides bicolor
, in the phylogenetic analysis rendered
L. dimidiatus
polyphyletic. Overall, the findings suggest the diversity within
L. dimidiatus
is underestimated.
Journal Article
Patch size drives settlement success and spatial distribution of coral larvae under space limitation
Space availability is a key factor linked to the settlement success of marine invertebrates. Settlement space on coral reefs is predicted to become increasingly fragmented and occupied by competitors under future disturbance regimes, yet how this impacts coral settlement remains largely unknown. We test the effects of space limitation on larval settlement in three common Indo-Pacific corals (Acropora valida, Acropora digitifera and Anacropora spinosa) by manipulating substrate area while maintaining a constant larval supply. Settlement success was highly variable among coral species, with reduced space leading to an up to four-fold increase in settlement of A. valida larvae, a two-fold decrease in settlement of An. spinosa larvae and no significant effect for A. digitifera. All species displayed similar spatial settlement patterns, whereby larvae settled gregariously irrespective of how much space was available. At the same time, settlers were found to increasingly occur in aggregates (in direct contact with each other) as space decreased. We propose that increased settler aggregations, coupled with settlement intensification for some species, facilitates the formation of chimeras as space becomes limiting. In colonial organisms, the formation of aggregates and particularly chimeric individuals may offset the negative effects of increased competition for space by allowing settlers to rapidly exceed size-escape thresholds, thereby increasing the likelihood of survival.
Journal Article
Changes in local free-living parasite populations in response to cleaner manipulation over 12 years
Predation on parasites is an important ecological process, but few experimental studies have examined the long-term impacts on the prey. Cleaner fish prey upon large numbers and selectively feed on the larger individuals of the ectoparasitic stage of gnathiid isopods. Removal of cleaner fish Labroides dimidiatus for 1.5–12.5 years negatively affects coral reef fishes, but the mechanism is unclear. A reduction in local parasite populations or the size of individual parasites would benefit all susceptible fishes. We tested whether cleaner presence reduces local gnathiid populations using 18 patch-reefs distributed between two sites (both at Lizard Island, Great Barrier Reef) which were maintained cleaner-free or undisturbed for 12 years. Using emergence traps (1 m2), free-living gnathiid stages were sampled before and after cleaner fish were removed during the day and night, up to 11 times over the course of the experiment. There were effects of the removal in the predicted direction, driven largely by the response at one site over the other involving 200% more gnathiids, but manifested only in the daytime sampling after 4 months. There was also a main effect (36%) for the shared sample dates at both sites after 12 years. Gnathiid size occasionally differed with cleaner presence, but in no consistent way over time. Contrary to our predictions, changes in free-living gnathiid population numbers and their size structure rarely reflected the changes in fish populations and individuals observed on cleaner-free reefs. Therefore, evidence that this predator alone regulates gnathiids remains limited, suggesting other contributing processes are involved
Journal Article
Psoas:lumbar vertebra index: central sarcopenia independently predicts morbidity in elderly trauma patients
Introduction
Central sarcopenia as a surrogate for frailty has recently been studied as a predictor of outcome in elderly medical patients, but less is known about how this metric relates to outcomes after trauma. We hypothesized that psoas:lumbar vertebral index (PLVI), a measure of central sarcopenia, is associated with increased morbidity and mortality in elderly trauma patients.
Methods
A query of our institutional trauma registry from 2005 to 2010 was performed. Data was collected prospectively for the Pennsylvania Trauma Outcomes Study (PTOS). Inclusion criteria: age >55 years, ISS >15, and ICU LOS >48 h. Using admission CT scans, psoas:vertebral index was computed as the ratio between the mean cross-sectional areas of the psoas muscles and the L4 vertebral body at the level of the L4 pedicles. The 50th percentile of the psoas:L4 vertebral index value was determined, and patients were grouped into high (>0.84) and low (≤0.83) categories based on their relation to the cohort median. Primary endpoints were mortality and morbidity (as a combined endpoint for PTOS-defined complications). Univariate logistic regression was used to test the association between patient factors and mortality. Factors found to be associated with mortality at
p
< 0.1 were entered into a multivariable model.
Results
A total of 180 patients met the study criteria. Median age was 74 years (IQR 63–82), median ISS was 24 (IQR 18–29). Patients were 58 % male and 66 % Caucasian. Mean PLVI was 0.86 (SD 0.25) and was higher in male patients than female patients (0.91 ± 0.26 vs. 0.77 ± 0.21,
p
< 0.001). PLVI was not associated with mortality in univariate or multivariable modeling. After controlling for comorbidities, ISS, and admission SBP, low PLVI was found to be strongly associated with morbidity (OR 4.91, 95 % CI 2.28–10.60).
Conclusions
Psoas:lumbar vertebral index is independently and negatively associated with posttraumatic morbidity but not mortality in elderly, severely injured trauma patients. PLVI can be calculated quickly and easily and may help identify patients at increased risk of complications.
Journal Article
Error Bands for Impulse Responses
We show how correctly to extend known methods for generating error bands in reduced form VAR's to overidentified models. We argue that the conventional pointwise bands common in the literature should be supplemented with measures of shape uncertainty, and we show how to generate such measures. We focus on bands that characterize the shape of the likelihood. Such bands are not classical confidence regions. We explain that classical confidence regions mix information about parameter location with information about model fit, and hence can be misleading as summaries of the implications of the data for the location of parameters. Because classical confidence regions also present conceptual and computational problems in multivariate time series models, we suggest that likelihood-based bands, rather than approximate confidence bands based on asymptotic theory, be standard in reporting results for this type of model.
Journal Article
Initial venous lactate levels in patients with isolated penetrating extremity trauma: a retrospective cohort study
Introduction
Elevated initial lactate levels have been shown to be associated with severe injury in trauma patients, but some patients who do not appear to be in shock also presented with elevated lactate levels. We hypothesized that in hemodynamically stable patients with isolated penetrating extremity trauma, initial lactate level does not predict clinically significant bleeding.
Methods
A 5-year institutional database review was performed. Hemodynamically stable patients (HR < 101, SBP > 90) with isolated penetrating extremity trauma with an initial lactate sent were included. The exposure of interest was captured as a dichotomous variable by initial lactate level normal (
N
≤ 2.2 mEq/L), elevated (
E
> 2.2 mEq/L). The primary outcome measurement was clinically significant bleeding, defined by need for intervention (operation, angioembolization, or transfusion) or laboratory evidence of bleeding (presenting Hg < 7 g/dL, or Hg decrease by >2 g/dL/24 h). Chi-squared and Mann–Whitney tests were used to compare variables.
Results
A total of 132 patients were identified. There were no differences in demographics or mechanism of injury between the
N
(
n
= 43, 7 %) and
E
(
n
= 89, 14 %) groups. Median lactate levels were 1.6 (IQR 1.2–1.9) mEq/dL vs. 3.8 (IQR 2.8–5.2) in the N and E groups, p < 0.001. Lactate was elevated in 89 (67 %) patients but was not associated with clinically significant bleeding (37 % elevated vs. 39 % not elevated
p
= 0.82).
Conclusions
In hemodynamically stable patients with isolated penetrating trauma to the extremity, elevated initial venous lactate levels (>2.2 mEq/L) are not associated with bleeding or need for interventions. Clinical judgment remains the gold standard for evaluation and management of these patients.
Journal Article