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Mesophotic coral ecosystems (MCEs, reefs between 30 and 150 m depth) have been hypothesized to contribute to shallow reef recovery through the recruitment of larvae. However, few studies have directly examined this. Here we used mesophotic colonies of Seriatopora hystrix , a depth generalist coral, to investigate the effect of light intensity on larval behavior and settlement through ex situ experiments. We also investigated juvenile survival, growth, and physiological acclimation in situ. Bleached larvae and a significant reduction in settlement rates were found when the mesophotic larvae were exposed to light conditions corresponding to shallow depths (5 and 10 m) ex situ. The in situ experiments showed that mesophotic juveniles survived well at 20 and 40 m, with juveniles in shaded areas surviving longer than three months at 3–5 m during a year of mass bleaching in 2016. Juvenile transplants at 20 m showed a sign of physiological acclimation, which was reflected by a significant decline in maximum quantum yield. These results suggest that light is a significant factor for successful recolonization of depth-generalist corals to shallow reefs. Further, recolonization of shallow reefs may only occur in shaded habitats or potentially through multigenerational recruitments with intermediate depths acting as stepping stones.

Mesophotic coral ecosystems (MCEs, between 30 and 150 m depth) are hypothesized to contribute to the recovery of degraded shallow reefs through sexually produced larvae (referred to as Deep Reef Refuge Hypothesis). In Okinawa, Japan, the brooder coral Seriatopora hystrix was reported to be locally extinct in a shallow reef while it was found abundant at a MCE nearby. In this context, S. hystrix represents a key model to test the Deep Reef Refuge Hypothesis and to understand the potential contribution of mesophotic corals to shallow coral reef recovery. However, the reproductive biology of mesophotic S. hystrix and its potential to recolonize shallow reefs is currently unknown. This study reports for the first time, different temporal scales of reproductive periodicity and larval settlement of S. hystrix from an upper mesophotic reef (40 m depth) in Okinawa. We examined reproductive seasonality, lunar, and circadian periodicity (based on polyp dissection, histology, and ex situ planula release observations) and larval settlement rates in the laboratory. Mesophotic S. hystrix reproduced mainly in July and early August, with a small number of planulae being released at the end of May, June and August. Compared to shallow colonies in the same region, mesophotic S. hystrix has a 4-month shorter reproductive season, similar circadian periodicity, and smaller planula size. In addition, most of the planulae settled rapidly, limiting larval dispersal potential. The shorter reproductive season and smaller planula size may result from limited energy available for reproduction at deeper depths, while the similar circadian periodicity suggests that this reproductive aspect is not affected by environmental conditions differing with depth. Overall, contribution of mesophotic S. hystrix to shallow reef rapid recovery appears limited, although they may recruit to shallow reefs through a multistep process over a few generations or through random extreme mixing such as typhoons.

Distinguishing coral species is not only crucial for physiological, ecological, and evolutionary studies but also to enable effective management of threatened reef ecosystems. However, traditional hypotheses that delineate coral species based on morphological traits from the coral skeleton are frequently at odds with tree-based molecular approaches. Additionally, a dearth of species-levelmolecular markers has made species delimitation particularly challenging in speciesrich coral genera, leading to the widespread assumption that interspecific hybridization might be responsible for this apparent conundrum. Here, we used three lines of evidence—morphology, breeding trials, and molecular approaches—to identify species boundaries in a group of ecologically important tabular Acropora corals. In contrast to previous studies, our morphological analysis yielded groups thatwere congruent with experimental crosses aswell as with coalescent-based and allele sharing-based multilocus approaches to species delimitation. Our results suggest that species of the genus Acropora are reproductively isolated and independently evolving units that can be distinguished morphologically. These findings not only pave the way for a taxonomic revision of coral species but also outline an approach that can provide a solid basis to address species delimitation and provide conservation support to a wide variety of keystone organisms.

Mesophotic coral ecosystems (MCEs) are light-dependent communities occurring at depths of 30–150 m. They have been suggested to serve as refuge against thermal stress during heat waves for some coral species. Recent studies on MCEs have revealed a high diversity of communities, some unique, and that these ecosystems are far from being immune to anthropogenic threats. However, the depths at which these ecosystems are found make their exploration and study challenging. Consequently, most suitable environments for MCEs remain unexplored. To facilitate the detection and characterization of MCEs, we improved the methodology for mesophotic scleractinian survey by environmental DNA (eDNA) metabarcoding analysis using seawater collected by underwater mini-Remote Operated Vehicle (mini-ROV). We tested this improved approach at upper mesophotic sites in Okinawa, Japan, with different corals dominating the communities (i.e., Alveopora -dominated, Seriatopora -dominated, and Acropora -dominated communities). Despite the proximity of the different sites, our eDNA metabarcoding analyses detected the dominant coral genera specific to each site. In addition, this study detected numerous other genera present at these sites, including Acropora , Pachyseris, Galaxea, Lobophyllia, Montipora, Pocillopora, Porites, and others. Therefore, this study might support a new technical gate for comprehensive survey of MCEs using eDNA samples collected by underwater mini-ROV, although further technical improvement is required for quantitative estimation.

Mesophotic coral ecosystems (below 30–40 m depth) host a large diversity of zooxanthellate coral communities and may play an important role in the ecology and conservation of coral reefs. Investigating the reproductive biology of mesophotic corals is important to understand their life history traits. Despite an increase in research on mesophotic corals in the last decade, their reproductive biology is still poorly understood. Here, gametogenesis and fecundity of the Indo-Pacific mesophotic coral , Acropora tenella , were examined in an upper mesophotic reef (40 m depth) in Okinawa, Japan for the first time. Acropora tenella is a hermaphrodite with a single annual gametogenic cycle, and both oogenesis and spermatogenesis occurring for 11–12 and 5–6 months, respectively. Timing of spawning of this species was similar to other shallow Acropora spp. in the region. However, colonies had longer gametogenic cycles and less synchronous gamete maturation compared to shallow acroporids with spawning extended over consecutive months. Both the polyp fecundity (number of eggs per polyp) and gonad index (defined as the number of eggs per square centimeter) of A. tenella were lower than most acroporids. Our findings contribute to understanding of the life history of corals on mesophotic reefs and suggest that the reproductive biology of upper mesophotic corals is similar to that of shallow-water corals.

Mesophotic habitats are potential refugia for corals in the context of climate change. The seawater temperature in a mesophotic habitat is generally lower than in a shallow habitat. However, the susceptibility and threshold temperatures of mesophotic corals are not well understood. We compared 11 mesophotic and shallow species to understand their thermal stress thresholds using physiological parameters. Coral fragments were exposed to two thermal stress treatments, with temperatures set at ~30°C and ~31°C, and a low-temperature treatment set at ~28°C as the “no stress” condition for 14 days. We found that the threshold temperature of coral species at mesophotic depths is slightly lower or equal to that of corals in shallow depths. The results suggest that species in the mesophotic coral ecosystems can survive low (<4 degree heating weeks) thermal stress. However, mass bleaching and high mortality can be expected when temperatures rise above 4 degree heating weeks.

The recent review by Veron et al. (2025) posits that quantitative genomic evidence used to understand coral evolution should be secondary to species hypotheses derived from expert opinion based on field experience. The authors argue that morphological “biological entities” should take precedence over molecular evidence when conflicts arise. This perspective required the rejection of extensive, independent molecular datasets that have progressively converged on a robust evolutionary framework for reef corals. Here, we reaffirm how prioritising subjective visual assessments over quantitative genetic and genomic data is methodologically unsound and scientifically regressive. We reject the framing of this perspective as “morphology versus molecules”. Rather, it is a fundamental divergence between two opposing philosophies: a static system anchored in non-reproducible expert judgement, and an integrative framework where genetic data provide the necessary independent test of morphological hypotheses. We show how a reliance on “field entities” obscures true morphological patterns by failing to distinguish between phenotypic plasticity, convergence, and evolutionary divergence. Effective taxonomy requires species hypotheses to be testable, and to stand or fall on the strength of reproducible evidence. Such a framework does not replace morphology; it validates it by providing an explicit, testable basis for evaluating morphological hypotheses. The integration of testable, reproducible molecular analysis with other lines of evidence including morphology is the benchmark of modern taxonomy across all Kingdoms of Life. We address the logical inconsistencies in the general arguments put forward by Veron et al. (2025) and refute their specific rejection of recent Acropora species-level revision with reproducible data.

The Hawaiian gold coral has a history of exploitation from the deep slopes and seamounts of the Hawaiian Islands as one of the precious corals commercialised in the jewellery industry. Due to its peculiar characteristic of building a scleroproteic skeleton, this zoanthid has been referred as Gerardia sp. (a junior synonym of Savalia Nardo, 1844) but never formally described or examined by taxonomists despite its commercial interest. While collection of Hawaiian gold coral is now regulated, globally seamounts habitats are increasingly threatened by a variety of anthropogenic impacts. However, impact assessment studies and conservation measures cannot be taken without consistent knowledge of the biodiversity of such environments. Recently, multiple samples of octocoral-associated zoanthids were collected from the deep slopes of the islands and seamounts of the Hawaiian Archipelago. The molecular and morphological examination of these zoanthids revealed the presence of at least five different species including the gold coral. Among these only the gold coral appeared to create its own skeleton, two other species are simply using the octocoral as substrate, and the situation is not clear for the final two species. Phylogenetically, all these species appear related to zoanthids of the genus Savalia as well as to the octocoral-associated zoanthid Corallizoanthus tsukaharai, suggesting a common ancestor to all octocoral-associated zoanthids. The diversity of zoanthids described or observed during this study is comparable to levels of diversity found in shallow water tropical coral reefs. Such unexpected species diversity is symptomatic of the lack of biological exploration and taxonomic studies of the diversity of seamount hexacorals.