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"Sissoko, A"
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Metagenomic whole genome shotgun analysis of the airway microbiome in laryngotracheal stenosis: a pilot study
2025
The airway microbiome has been implicated in the pathogenesis of laryngotracheal stenosis (LTS), yet prior studies using 16 S rRNA sequencing have limited sub-genus level resolution. Metagenomic whole genome shotgun sequencing (mWGS) allows for strain-level taxonomic and functional genomic analysis, providing detailed insights into specific organisms and pathways. A pilot study was conducted to explore the advantages and challenges of mWGS in investigating the airway metagenome in LTS. mWGS was conducted on 12 intraoperative swab samples from 8 LTS patients, divided into tracheostomy-dependent (
n
= 3) and non-tracheostomy (
n
= 5) groups, and 4 controls. Patient comorbidities, antibiotic use, and medications were documented. Biobakery workflows were used for taxonomic and functional profiling. Species-specific reference databases were constructed for 6 abundant species for strain-level analyses. LTS samples had decreased taxonomic diversity and were dominated by species with previously described roles in other chronic inflammatory processes such as
Staphylococcus aureus
,
Streptococcus parasanguinis
,
Streptococcus mitis
, and
Corynebacterium pseudogenitalium.
LTS samples were enriched for pathways involved in fatty acid biosynthesis and formaldehyde metabolism. Our results identified tracheostomy as an important potential confounder in airway metagenomics but show mWGS techniques are promising in uncovering microbiota correlates in LTS that could reveal disease-specific biomarkers, comorbidity links, and therapeutic targets.
Journal Article
CFD simulation of double-pass solar dryer with air return
2024
An indirect solar dryer was designed and manufactured in Yamoussoukro, Côte d’Ivoire. It is equipped with three parameters including two air intake ports, a fan and a removable hot air recovery system. Vacuum CFD simulations were performed in order to observe the influence of these parameters on the effectiveness of the device. The fan switched off speeds of 9 m/s and made the air distribution uniform in the drying cabin. The natural convection operation made it possible to reach 62°C in the drying chamber compared to 55°C for the forced convection operation. The unique opening of the low air intake port in operation accentuates the temperature variations in the cabin compartments with differences of + 5°C from one level to another. The hot air return system has a positive impact on temperature trends because it allows values of 65°C to be reached inside the chamber, ideal for drying agri-food products. However, this recovery reduces the air velocity in the cabin, which is a disadvantage for the performance during products. This problem could be solved by increasing the fan power.
Journal Article
3D‐printed neck phantoms with detailed anatomy for ultrasound‐guided procedure and device testing
by
Sissoko, Cheick A.
,
Dion, Gregory R.
,
Hasson, Aida M.
in
3D printing
,
agar
,
anatomical phantom
2024
Objectives With rapid advances in ultrasound‐guided procedures, there is an unmet need for echogenic phantoms with sufficient anatomical details for artificial intelligence and ultrasound‐guided device testing. We developed a method for creating neck phantoms for novel otolaryngology‐related device testing. To achieve accurate representation of the anatomy, we utilized CT scans and 3D printing technology to create customized agar molds, thus providing high‐fidelity yet cost‐effective tools. Methods Based on previous studies, the key components in our neck phantom include the cervical vertebrae, trachea, common carotid arteries, internal jugular veins, thyroid gland, and surrounding soft tissue. Open‐source image analysis software were employed to process CT data to generate high fidelity 3D models of the target structures. Resin molds were 3D printed and filled with various agar mixtures to mimic anatomical echogenicity. Results Following the method proposed, we successfully assembled the neck phantom which provided a detailed representation of the target structures. To evaluate the results, ultrasound data was collected on the phantom and living tissue and analyzed with ImageJ. We were able to demonstrate echogenicity comparable to that of living tissue. Conclusion The proposed method for building neck phantoms with detailed anatomical features offers a valuable, detailed, low‐cost tool for medical training and device testing in otolaryngology, particularly for novel devices that involve artificial intelligence (AI) guidance and robotic‐based needle insertion. Additional anatomical refinements and validation studies could further enhance the consistency and accuracy, thus paving the way for future advancements in ultrasound training and research, and ultimately benefiting patient care and safety. Realistic phantoms that have human quality echogenicity on ultrasound are needed for education and as a testing platform for novel technologies. We leveraged 3D printing technology to translate computed tomography scans from humans into a usable ultrasound phantom model.
Journal Article
Fertility after Endoscopic Surgery for Ectopic Pregnancy Management in Point \G\ Teaching Hospital, Bamako-Mali
by
Sissoko, Moussa
,
Sanogo, Zimogo Z
,
Keita, Soumaila
in
anomalie tubaire
,
Diseases
,
Ectopic pregnancy
2020
Endoscopic surgery of ectopic pregnancy is actually the gold standard
for the management of fallopian tubal diseases. A survey was conducted
to evaluate fertility in patients who underwent endoscopic management
for ectopic pregnancy. A retrospective study was conducted at the
department of general and endoscopic surgery of the Point \"G\" teaching
hospital, in Bamako, Mali, from January 1st 2007 to December 31, 2016.
Forty-eight (48) patients who underwent endoscopic management of tubal
ectopic pregnancy and who have been followed up for fertility were
included in this study. Statistical tests used were X2 or Fisher test
and their confident interval, p<1 % has been considered as
statistically significant. The therapeutic score of Pouly was less than
4 in 25.0% (n = 12). The return to fertility was observed among 48.0%
of patients (n = 23). The chance of conception was less than 80.0%
after the fourth postoperative year (p=0.001). The outcome of
pregnancies has been seventeen full-term pregnancies, three ectopic
pregnancies and three miscarriages. The occurrence of pregnancy after
endoscopic management indicated for ectopic pregnancy is possible.
However, many factors can influence the future conception. (Afr J
Reprod Health 2020; 24[1]: 115-120).
La chirurgie endoscopique de la grossesse extra-utérine est en
fait l'étalon-or pour la gestion des maladies des trompes de
Fallope. Une enquête a été menée pour évaluer
la fécondité auprès des patientes qui ont subi une prise
en charge endoscopique pour une grossesse extra-utérine. Une
étude rétrospective a été menée au service de
chirurgie générale et endoscopique du Centre Hospitalier
Universitaire du Point \"G\", à Bamako, Mali, du 1er janvier 2007 au
31 décembre 2016. Quarante-huit (48) patientes ayant subi une
prise en charge endoscopique des trompes de la grossesse
extra-utérine et qui ont été suivies pour la
fécondité ont fait partie de cette étude. Les tests
statistiques utilisés étaient le test X2 ou Fisher et leur
intervalle de confiance, p <1%, a été considéré
comme statistiquement significatif. Le score thérapeutique de
Pouly était inférieur à 4 sur 25,0% (n = 12). Le retour
à la fécondité a été remarqué chez 48,0%
des patients (n = 23). Le risque de conception était
inférieur à 80,0% après la quatrième année
postopératoire (p = 0,001). Le résultat des grossesses a
été de dix-sept grossesses à terme, trois grossesses
extra-utérines et trois fausses couches. La survenue d'une
grossesse après une prise en charge endoscopique indiquée
pour une grossesse extrautérine est possible. Cependant, de
nombreux facteurs peuvent influencer la conception future. (Afr J
Reprod Health 2020; 24[1]: 115-120).
Journal Article
Infection length and host environment influence on Plasmodium falciparum dry season reservoir
by
Crompton, Peter D
,
Neafsey, Daniel E
,
LaVerriere, Emily
in
Asymptomatic
,
Biologi
,
Biological Sciences
2024
Persistence of malaria parasites in asymptomatic hosts is crucial in areas of seasonally-interrupted transmission, where
P. falciparum
bridges wet seasons months apart. During the dry season, infected erythrocytes exhibit extended circulation with reduced cytoadherence, increasing the risk of splenic clearance of infected cells and hindering parasitaemia increase. However, what determines parasite persistence for long periods of time remains unknown. Here, we investigated whether seasonality affects plasma composition so that
P. falciparum
can detect and adjust to changing serological cues; or if alternatively, parasite infection length dictates clinical presentation and persistency. Data from Malian children exposed to alternating ~6-month wet and dry seasons show that plasma composition is unrelated to time of year in non-infected children, and that carrying
P. falciparum
only minimally affects plasma constitution in asymptomatic hosts. Parasites persisting in the blood of asymptomatic children from the dry into the ensuing wet season rarely if ever appeared to cause malaria in their hosts as seasons changed. In vitro culture in the presence of plasma collected in the dry or the wet seasons did not affect parasite development, replication or host-cell remodelling. The absence of a parasite-encoded sensing mechanism was further supported by the observation of similar features in
P. falciparum
persisting asymptomatically in the dry season and parasites in age- and sex-matched asymptomatic children in the wet season. Conversely, we show that
P. falciparum
clones transmitted early in the wet season had lower chance of surviving until the end of the following dry season, contrasting with a higher likelihood of survival of clones transmitted towards the end of the wet season, allowing for the re-initiation of transmission. We propose that the decreased virulence observed in persisting parasites during the dry season is not due to the parasites sensing ability, nor is it linked to a decreased capacity for parasite replication but rather a consequence decreased cytoadhesion associated with infection length.
Synopsis
Persistent malaria parasites bridge transmission seasons months apart. Whether plasma composition is seasonally affected, allowing
P. falciparum
to adjust to serological cues; or if duration of infection dictates clinical presentation and persistence was investigated in a cohort of Malian children.
Seasonal variations and asymptomatic infections resulted in minimal changes in plasma composition.
Dry and wet season plasma impacted
P. falciparum
in vitro similarly.
Alleles persisting during the dry season were unlikely to cause clinical malaria within the same host.
Asymptomatic carriers exhibited extended circulation of infected erythrocytes in both the wet and dry seasons.
Parasite clones transmitted late in the wet season had higher chances of surviving and persisting through the dry season.
Persistent malaria parasites bridge transmission seasons months apart. Whether plasma composition is seasonally affected, allowing
P. falciparum
to adjust to serological cues; or if duration of infection dictates clinical presentation and persistence was investigated in a cohort of Malian children.
Journal Article
Patient-Reported Outcome Measures (PROMs) for Two Implant Placement Techniques in Sinus Region (Bone Graft versus Computer-Aided Implant Surgery): A Randomized Prospective Trial
by
Fortin, Thomas
,
Almahrous, Ghazwan
,
David-Tchouda, Sandra
in
Bernard, Claude (1813-1878)
,
Clinical outcomes
,
Defects
2020
Purpose: To assess patient-reported outcomes measures (PROMs) for two implant placement techniques in cases of sinus bone atrophy (bone graft surgery (BGS) versus computer-aided implant surgery (CAIS)), after surgery and one year later, and to evaluate the clinical success of both treatments. Methods: Sixty patients with bone atrophy in the posterior maxilla and in need of implant placement were randomly assigned to two groups, and in accordance with the case report form (CRF), 30 were treated with BGS and 30 with CAIS. Immediately after treatment and one year later, PROMs were assessed, and the clinical success of both treatments was evaluated. Results: No significant differences were found between BGS and CAIS with regard to the following: loss of implants (p = 492); patient recommendation (p = 210); duration of surgery (p = 987); pain on the intervention day (p = 512); pain in the week after intervention (p = 299); and complications in the stage of surgery (p = 1.00). Similarly, at one year, no differences were found with regard to the following: pain around implant (p = 481); infection of implants (p = 491); abnormal radiographic imaging (p = 226); occurrence of undesirable events (p = 1.00); loss of one of the implants (p = 1.00); plaque detection (p = 1.00); bleeding on probing (p = 236); and presence of keratinized mucosa (p = 226). However, a significant difference was found among BGS and CAIS with regard to the number of consultations (p = 0001); number of implants placed (p = 033); and treatment difficulty (p = 0369). Significant differences were found for peri-implantitis (p = 0481) and radiology of craterization (p = 020) in clinical examination at the first year. Conclusion: Treatment difficulty and number of consultations were higher for BGS than for CAIS, as well as peri-implantitis and bone craterization at one year, indicating significant differences between the two treatments. However, there were no statistically significant differences between BGS and CAIS regarding the other PROMs, at placement and after one year.
Journal Article
A bidirectional relationship between sleep and oxidative stress in Drosophila
by
Sissoko, Gunter B.
,
Stavropoulos, Nicholas
,
Canman, Julie C.
in
Animal cognition
,
Animals
,
Antioxidants
2018
Although sleep appears to be broadly conserved in animals, the physiological functions of sleep remain unclear. In this study, we sought to identify a physiological defect common to a diverse group of short-sleeping Drosophila mutants, which might provide insight into the function and regulation of sleep. We found that these short-sleeping mutants share a common phenotype of sensitivity to acute oxidative stress, exhibiting shorter survival times than controls. We further showed that increasing sleep in wild-type flies using genetic or pharmacological approaches increases survival after oxidative challenge. Moreover, reducing oxidative stress in the neurons of wild-type flies by overexpression of antioxidant genes reduces the amount of sleep. Together, these results support the hypothesis that a key function of sleep is to defend against oxidative stress and also point to a reciprocal role for reactive oxygen species (ROS) in neurons in the regulation of sleep.
Journal Article
Safety and efficacy of a three-dose regimen of Plasmodium falciparum sporozoite vaccine in adults during an intense malaria transmission season in Mali: a randomised, controlled phase 1 trial
2022
WHO recently approved a partially effective vaccine that reduces clinical malaria in children, but increased vaccine activity is required to pursue malaria elimination. A phase 1 clinical trial was done in Mali, west Africa, to assess the safety, immunogenicity, and protective efficacy of a three-dose regimen of Plasmodium falciparum sporozoite (PfSPZ) Vaccine (a metabolically active, non-replicating, whole malaria sporozoite vaccine) against homologous controlled human malaria infection (CHMI) and natural P falciparum infection.
We recruited healthy non-pregnant adults aged 18–50 years in Donéguébougou, Mali, and surrounding villages (Banambani, Toubana, Torodo, Sirababougou, Zorokoro) for an open-label, dose-escalation pilot study and, thereafter, a randomised, double-blind, placebo-controlled main trial. Pilot study participants were enrolled on an as-available basis to one group of CHMI infectivity controls and three staggered vaccine groups receiving: one dose of 4·5 × 105, one dose of 9 × 105, or three doses of 1·8 × 106 PfSPZ via direct venous inoculation at approximately 8 week intervals, followed by homologous CHMI 5 weeks later with infectious PfSPZ by direct venous inoculation (PfSPZ Challenge). Main cohort participants were stratified by village and randomly assigned (1:1) to receive three doses of 1·8 × 106 PfSPZ or normal saline at 1, 13, and 19 week intervals using permuted block design by the study statistician. The primary outcome was safety and tolerability of at least one vaccine dose; the secondary outcome was vaccine efficacy against homologous PfSPZ CHMI (pilot study) or against naturally transmitted P falciparum infection (main study) measured by thick blood smear. Combined artesunate and amodiaquine was administered to eliminate pre-existing parasitaemia. Outcomes were analysed by modified intention to treat (mITT; including all participants who received at least one dose of investigational product; safety and vaccine efficacy) and per protocol (vaccine efficacy). This trial is registered with ClinicalTrials.gov, number NCT02627456.
Between Dec 20, 2015, and April 30, 2016, we enrolled 56 participants into the pilot study (five received the 4·5 × 105 dose, five received 9 × 105, 30 received 1·8 × 106, 15 were CHMI controls, and one withdrew before vaccination) and 120 participants into the main study cohort with 60 participants assigned PfSPZ Vaccine and 60 placebo in the main study. Adverse events and laboratory abnormalities post-vaccination in all dosing groups were few, mainly mild, and did not differ significantly between vaccine groups (all p>0·05). Unexpected severe transaminitis occured in four participants: one participant in pilot phase that received 1·8 × 106 PfSPZ Vaccine, one participant in main phase that received 1·8 × 106 PfSPZ Vaccine, and two participants in the main phase placebo group. During PfSPZ CHMI, approximately 5 weeks after the third dose of 1·8 × 106 PfSPZ, none of 29 vaccinees and one of 15 controls became positive on thick blood smear; subsequent post-hoc PCR analysis for submicroscopic blood stage infections detected P falciparum parasites in none of the 29 vaccine recipients and eight of 15 controls during CHMI. In the main trial, 32 (58%) of 55 vaccine recipients and 42 (78%) of 54 controls became positive on thick blood smear during 24-week surveillance after vaccination. Vaccine efficacy (1–hazard ratio) was 0·51 per protocol (95% CI 0·20–0·70; log-rank p=0·0042) and 0·39 by mITT (0·04–0·62; p=0·033); vaccine efficacy (1–risk ratio) was 0·24 per-protocol (0·02–0·41; p=0·031) and 0·22 mITT (0·01–0·39; p=0·041).
A three-dose regimen of PfSPZ Vaccine was safe, well tolerated, and conferred 51% vaccine efficacy against intense natural P falciparum transmission, similar to 52% vaccine efficacy reported for a five-dose regimen in a previous trial.
US National Institute of Allergy and Infectious Diseases, National Institutes of Health, Sanaria.
For the French translation of the abstract see Supplementary Materials section.
Journal Article
Social representations of malaria in a southern Malian community: an ethnographic qualitative study
by
Sissoko, N’bamori dite Naba
,
Wang, Jiaqi Rosemary
,
Sissoko, Bourema
in
Aquatic insects
,
Biomedical and Life Sciences
,
Biomedicine
2022
Background
Malaria is one of the prime reasons for medical consultation and the major cause of morbidity and mortality in Mali. To assess and understand the dynamics of social representations of malaria, the anthropological research was conducted in the Wayerema II neighbourhood of the health district of Sikasso, southern Mali.
Methods
This was an ethnographic study conducted qualitatively in 2011 and 2016 through informal conversations, 70 semi-structured interviews, and participant observations with key actors. The observations, conversations, and interviews investigated local people’s perceptions and knowledge about malaria, and how and to what extent the cultural and popular representations of the disease can have an impact on therapeutic routes.
Results
Mosquitoes are the principal agent of the transmission of malaria. However, the ubiquitous yet casually-claimed aetiological agents, causative, nosographic entities differ from—although sometimes integrated into—the biomedical dimension. For example, some communities perceive
Kono
, a complicated and pernicious form of malaria that often occurs among children, to originate from a supernatural force. “Bird disease” is another term used for
Kono
in Mali and other West African countries. Thus, overall,
Kono
is defined through the entanglements with cultural factors, namely the idiosyncratic habits, customs, and beliefs of the population of Wayerema II neighbourhood in the health district of Sikasso, Southern Mali. Wayerema II residents particularly tend to link therapeutic recourse amongst the afflicted not only to biomedical models but to sociocultural and popular perceptions and representations of malaria.
Conclusion
In the findings, self-medication through both traditional and modern medical techniques was the most frequent therapeutic modality. Hence, the integration of local popular knowledge with the biomedical register can contribute to a comprehensive understanding of social representations and perceptions of malaria, and qualitative improvements in the malaria control programme.
Journal Article
Safety and efficacy of PfSPZ Vaccine against Plasmodium falciparum via direct venous inoculation in healthy malaria-exposed adults in Mali: a randomised, double-blind phase 1 trial
2017
Plasmodium falciparum sporozite (PfSPZ) Vaccine is a metabolically active, non-replicating, whole malaria sporozoite vaccine that has been reported to be safe and protective against P falciparum controlled human malaria infection in malaria-naive individuals. We aimed to assess the safety and protective efficacy of PfSPZ Vaccine against naturally acquired P falciparum in malaria-experienced adults in Mali.
After an open-label dose-escalation study in a pilot safety cohort, we did a double-blind, randomised, placebo-controlled trial based in Donéguébougou and surrounding villages in Mali. We recruited 18–35-year-old healthy adults who were randomly assigned (1:1) in a double-blind manner, with stratification by village and block randomisation, to receive either five doses of 2·7 × 105 PfSPZ or normal saline at days 0, 28, 56, 84, and 140 during the dry season (January to July inclusive). Participants and investigators were masked to group assignments, which were unmasked at the final study visit, 6 months after receipt of the last vaccination. Participants received combined artemether and lumefantrine (four tablets, each containing 20 mg artemether and 120 mg lumefantrine, given twice per day over 3 days for a total of six doses) to eliminate P falciparum before the first and last vaccinations. We collected blood smears every 2 weeks and during any illness for 24 weeks after the fifth vaccination. The primary outcome was the safety and tolerability of the vaccine, assessed as local and systemic reactogenicity and adverse events. The sample size was calculated for the exploratory efficacy endpoint of time to first P falciparum infection beginning 28 days after the fifth vaccination. The safety analysis included all participants who received at least one dose of investigational product, whereas the efficacy analyses included only participants who received all five vaccinations. This trial is registered at ClinicalTrials.gov, number NCT01988636.
Between Jan 18 and Feb 24, 2014, we enrolled 93 participants into the main study cohort with 46 participants assigned PfSPZ Vaccine and 47 assigned placebo, all of whom were evaluable for safety. We detected no significant differences in local or systemic adverse events or laboratory abnormalities between the PfSPZ Vaccine and placebo groups, and only grade 1 (mild) local or systemic adverse events occurred in both groups. The most common solicited systemic adverse event in the vaccine and placebo groups was headache (three [7%] people in the vaccine group vs four [9%] in the placebo group) followed by fatigue (one [2%] person in the placebo group), fever (one [2%] person in the placebo group), and myalgia (one [2%] person in each group). The exploratory efficacy analysis included 41 participants from the vaccine group and 40 from the placebo group. Of these participants, 37 (93%) from the placebo group and 27 (66%) from the vaccine group developed P falciparum infection. The hazard ratio for vaccine efficacy was 0·517 (95% CI 0·313–0·856) by time-to-infection analysis (log-rank p=0·01), and 0·712 (0·528–0·918) by proportional analysis (p=0·006).
PfSPZ Vaccine was well tolerated and safe. PfSPZ Vaccine showed significant protection in African adults against P falciparum infection throughout an entire malaria season.
US National Institutes of Health Intramural Research Program, Sanaria.
Journal Article